LOC118947111 (LOC106592188)


Basic Information

Item Value
gene id LOC118947111
gene name LOC106592188
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493663.1
NCBI id JAAXML020000320.1
chromosome length 1654043
location 357340 ~ 365295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972288.1
ATGTACCTTGGTAATCAGGGGACTGACAACAACGACGGACCAGGAAGCGACATTTTCGAAATAGCAAGAAATGCAAAAGGTTTATAAACTTTGAAATGCAGTGAGAATTCTAAAATTGCATTCAACCAATATTTATCAGATTAGTCTCGTTTCGCAAGAAAGAGGGACCTTCCGTCCGCGCTAACATTACTAGTAAGTTAAGTTAGACCATAGAGGTGTCGTCATTGTGCTCACAGCCATGTGGGGGGAGATTGACCCTGTTCCCGAGCCCAGTCCGCCTGTCAGCGTTGAACCAGTGGCCTGCAGACAGCCCGACCCCCGGCGACCACAGCCCGACCCCCGGAGACCACAGCCCGACCCCAGGGGAACCGGACCAGCTTCTAGCTGCTCTGAAACCGCCCACACCGAGGAGGACGAGCCGCAGGACAACCAGGCCCACCTGAAGCCACAGCACCTGTCAGTATTCTGCCATCTGACTTCTGACCCCCGGGCGCAGTACTACTGCCGGGAGGTGAGGCGGAGAGCAGCGGGACGGACCAACAGGACCCGGGTACGCAACCAACGCTACGCTGCCCTCAGAGAGCTGCAGAGGGAGGGCCAGTACTTCAGTGAGGACCAGATGAGAAGCCGGGAGCCCCTACTGTATGAGCAATACATCGGCCAATACCTGACAGAGGAGGAGCTGCTACATCGCTCCCTCGAGGCCATGCAGGGAGGAGCAGGGGAGGAGCGGGGGCCGGGGGGAGCAGAGGGGGGGCTGGCccacctcctcctcacctcctaccAGGAGAGACTGATCCAGAGCCGGCTGCAGGAGGAGCAGGACAGGGAGGAGAAcgcactggaggaggaggagggggaggaggGTGGAGGGTTGGGGGCAGAGGGCTATGAGCCAACACCCCAGGAGAAAGCTCTGCTCAGGGACGAGTTCATCACTCAGATGTACCAACGCTTCCTGGACGGACACGACAAAGACTTTAACTACAGTGAAGTGGACGGGAACCCCGACTACGACAACCTGGACATCGTCAACAGAGATGCAGAGGAGAAGTACTTcgatgaggatgaagaggaggaggaggaagaggaggaggaggacatgaCTATAGATGTGTCATGACAGCAGCTGTCATTGGACTGTAAATATATTAACTTCTGTAATAACTATACTATGTAATGTTTCTACTCTGTTTATTCTCCTCACATTCATTTAATATTCAGTTTGCATGGATAGCAATAAATCGTGTGTGTTTACGTA
>XM_036972287.1
GTACCTTGGTAATCAGGGGACTGACAACAACGACGGACCAGGAAGCGACATTTTCGAAATAGCAAGAAATGCAAAAGGTTTATAAACTTTGAAATGCAGTGAGAATTCTAAAATTGCATTCAACCAATATTTATCAGATTAGTCTCGTTTCGCAAGAAAGAGGGACCTTCCGTCCGCGCTAACATTACTAGTAAGTTAAGTTAGACCATAGAGGTGTCGTCATTGTGCTCACAGCCATGTGGGGGGAGATTGACCCTGTTCCCGAGCCCAGTCCGCCTGTCAGCGTTGAACCAGTGGCCTGCAGACAGCCCGACCCCCGGCGACCACAGCCCGACCCCCGGAGACCACAGCCCGACCCCAGGGGAACCGGACCAGCTTCTAGCTGCTCTGAAACCGCCCACACCGAGGAGGACGAGCCGCAGGACAACCAGgCGGATCCCATCGGTGTGTGTGctatggtggaggtggtggctgTGAGTGGTATTCAGGTGAAGAGCCAGCAGGTAGGTGAGGCAGAACTGACCGTAGCCCAGCGGAGAGAGGAGCTGCTGGGACAGTACCGGACCAAGCCCCTggtgttcctggagagataccagGCCCACCTGAAGCCACAGCACCTGTCAGTATTCTGCCATCTGACTTCTGACCCCCGGGCGCAGTACTACTGCCGGGAGGTGAGGCGGAGAGCAGCGGGACGGACCAACAGGACCCGGGTACGCAACCAACGCTACGCTGCCCTCAGAGAGCTGCAGAGGGAGGGCCAGTACTTCAGTGAGGACCAGATGAGAAGCCGGGAGCCCCTACTGTATGAGCAATACATCGGCCAATACCTGACAGAGGAGGAGCTGCTACATCGCTCCCTCGAGGCCATGCAGGGAGGAGCAGGGGAGGAGCGGGGGCCGGGGGGAGCAGAGGGGGGGCTGGCccacctcctcctcacctcctaccAGGAGAGACTGATCCAGAGCCGGCTGCAGGAGGAGCAGGACAGGGAGGAGAAcgcactggaggaggaggagggggaggaggGTGGAGGGTTGGGGGCAGAGGGCTATGAGCCAACACCCCAGGAGAAAGCTCTGCTCAGGGACGAGTTCATCACTCAGATGTACCAACGCTTCCTGGACGGACACGACAAAGACTTTAACTACAGTGAAGTGGACGGGAACCCCGACTACGACAACCTGGACATCGTCAACAGAGATGCAGAGGAGAAGTACTTcgatgaggatgaagaggaggaggaggaagaggaggaggaggacatgaCTATAGATGTGTCATGACAGCAGCTGTCATTGGACTGTAAATATATTAACTTCTGTAATAACTATACTATGTAATGTTTCTACTCTGTTTATTCTCCTCACATTCATTTAATATTCAGTTTGCATGGATAGCAATAAATCGTGTGTGTTTACGTA
>TU2675315
GACGGACCAGGAAGCGACATTTTCGAAATAGCAAGAAATGCAAAAGGTTTATAAACTTTGAAATGCAGTGAGAATTCTAAAATTGCATTCAACCAATATTTATCAGATTAGTCTCGTTTCGCAAGAAAGAGGGACCTTCCGTCCGCGCTAACATTACTAGTAAGTTAAGTTAGACCATAGAGGTGTCGTCATTGTGCTCACAGCCATGTGGGGGGAGATTGACCCTGTTCCCGAGCCCAGTCCGCCTGTCAGCGTTGAACCAGTGGCCTGCAGACAGCCCGACCCCCGGCGACCACAGCCCGACCCCCGGAGACCACAGCCCGACCCCAGGGGAACCGGACCAGCTTCTAGCTGCTCTGAAACCGCCCACACCGAGGAGGACGAGCCGCAGGACAACCAGgCGGATCCCATCGGTGTGTGTGctatggtggaggtggtggctgTGAGTGGTATTCAGGTGAAGAGCCAGCAGGTAGGTGAGGCAGAACTGACCGTAGCCCAGCGGAGAGAGGAGCTGCTGGGACAGTACCGGACCAAGCCCCTggtgttcctggagagataccagGCCCACCTGAAGCCACAGCACCTGTCAGTATTCTGCCATCTGACTTCTGACCCCCGGGCGCAGTACTACTGCCGGGAGGTGAGGCGGAGAGCAGCGGGACGGACCAACAGGACCCGGGTACGCAACCAACGCTACGCTGCCCTCAGAGAGCTGCAGAGGGAGGGCCAGTACTTCAGTGAGGACCAGATGAGAAGCCGGGAGCCCCTACTGTATGAGCAATACATCGGCCAATACCTGACAGAGGAGGAGCTGCTACATCGCTCCCTCGAGGCCATGCAGGGAGGAG
>TU2675316
GGCAGAGGGCTATGAGCCAACACCCCAGGAGAAAGCTCTGCTCAGGGACGAGTTCATCACTCAGATGTACCAACGCTTCCTGGACGGACACGACAAAGACTTTAACTACAGTGAAGTGGACGGGAACCCCGACTACGACAACCTGGACATCGTCAACAGAGATGCAGAGGAGAAGTACTTcgatgaggatgaagaggaggaggaggaagaggaggaggaggacatgaCTATAGATGTGTCATGACAGCAGCTGTCATTGGACTGTAAATATATTAACTTCTGTAATAACTATACTATGTAATGTTTCTACTCTGTTTATTCTCCTCACATTCATTTAATATTCAGTTTGCATGGATAGCAATAAATCGT

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 97-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972288.1 False 1261 mRNA 0.55 5 357340 365295
XM_036972287.1 False 1424 mRNA 0.55 6 357342 365295
TU2675315 False 851 TUCP 0.57 4 357373 360441
TU2675316 True 369 lncRNA 0.45 2 363204 365282

Neighbor

gene id symbol gene type direction distance location
LOC110516851 LOC103393300 coding upstream 2766 303920 ~ 354574 (+)
LOC110513171 LOC106592102 coding upstream 71787 244305 ~ 285553 (+)
LOC110513632 LOC106593935 coding upstream 155648 165852 ~ 201735 (+)
LOC118947110 chst12 coding upstream 324597 16176 ~ 32743 (+)
LOC110517035 LOC106593794 coding downstream 8351 373646 ~ 404607 (+)
LOC110514366 drg2 coding downstream 74374 439669 ~ 468142 (+)
LOC110518409 LOC103147439 coding downstream 177294 542589 ~ 642829 (+)
LOC118947105 NA coding downstream 277580 642875 ~ 712223 (+)
LOC110513986 LOC106595859 coding downstream 347211 712506 ~ 758405 (+)
G2337503 NA non-coding upstream 6893 349982 ~ 350447 (+)
G2337502 NA non-coding upstream 7584 349243 ~ 349756 (+)
G2337497 NA non-coding upstream 20253 336594 ~ 337087 (+)
G2337479 NA non-coding upstream 68235 288884 ~ 289105 (+)
G2337478 NA non-coding upstream 68814 288287 ~ 288526 (+)
G2337512 NA non-coding downstream 12571 377866 ~ 378315 (+)
G2337518 NA non-coding downstream 44059 409354 ~ 409668 (+)
G2337519 NA non-coding downstream 44914 410209 ~ 410903 (+)
G2337520 NA non-coding downstream 51795 417090 ~ 417299 (+)
G2337395 NA non-coding downstream 54370 419665 ~ 420792 (+)
G2337538 NA other downstream 186372 551667 ~ 553181 (+)
LOC110516979 llgl1 other downstream 405987 771209 ~ 871700 (+)
LOC110512918 LOC106602080 other downstream 619140 984288 ~ 1012248 (+)
G2338043 NA other downstream 675665 1040960 ~ 1041498 (+)
G2338054 NA other downstream 705347 1070642 ~ 1083082 (+)
LOC118947111 LOC106592188 other upstream 2763 357340 ~ 365295 (+)

Expression


Co-expression Network