LOC110518409 (LOC103147439)


Basic Information

Item Value
gene id LOC110518409
gene name LOC103147439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493663.1
NCBI id JAAXML020000320.1
chromosome length 1654043
location 542589 ~ 642829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972238.1
tgtgtctgtgtgtagatgTACTCCATCCGCAGCCTGCCCAGCATGGTGTACCGGGAGCAGCCAGAGGAAGACGGAGTAGAGGACATGACGCAGCTGGAGGAGCTGTCTGAGGGATCTGTGCTGCTCAACCTGAAGAAGAGGTTTGAGAGAGAGATCATCTATacaTATATAGGTAGTATCCTGGTCTCGGTGAACCCCTATAGGATGTTCAACATGTACGGAACTGACATGGTGCTGAAGCACAAGGGAACCGCTCTGGGAGAGAACCCTCCACACCTGTTTGCCATAGCAAACGTCTCCTACACCAAAATGATGGATGCCAAACAGAATCAGGTTATTATAATCAGtggggAGAGTGGATCAGGGAAGACTGAGGCTACTAAACTGCTGCTGCGTTACCTAGCAGCAATACACCacaaacacaacattacacaacagATTCTTGAGGCAGCTCCTCTTCTAGAATCCTTTGGAAATGCCAAAACAGTTCGCAACGACAACTCCAGTCGCTTCGGCAAATACGTGGAGATCTATctggaggagggtgTGATCAGCGGTGCCATAACCTCTCAGTATCTGATGGAAAAGTCCCGTATAGTCTTCCAggcCAGAGATGAGAGGAACTATCATATCTTCTATGAGATGCTGTCAGGTCTTCCCCCCCAGCAGAGGCAGGCCTTCTACCTGCAGGAGGCTGAGACGTATTATTACCTGAACCAGGGAGGGGATTGTGGGATAGCAGGAAAGAGTGACAGGGAGGACTTCCTCCGTCTGCTGGCTGCTATGGAGATCCTTCACTTCACCCCTGACGACCAGGCGTCCATCTTTAGAGTCCTGTCTTCTATTCTACACCTGGGGAACGTCTACTTCCAAAGATATGAGGCGGATGGCCAGGAGGTGGCGTCTGTGGTCAGTGCTCAGGAGATCAGAGTCGTAGCTGAGCTGCTCCAGATCTCCCCTGAGGGACTCCAGAAGGCCATCACACACAAAGTCACGGAGACCATGAGGGAGAAGATCTACACCCCTCTGACGGTAGAGAGTGCTGTAGACGCCAGAGATGCTGTTGCCAAGatcctgtactctctgttgtTCCACTGGCTGACTGAGAGGATTAATGGACAGGTGTATCCTCGACATCACGCTCTGTCAATATCTGTGCTGGATATATATGGCTTTGAGgacCTGTCCTTCAACAGCTTTGAGCAGCTGTGTATTAACTATGCTAATGAGTACCTGCAGTTCTTCTTCAATAGGATTGTCTTCAGACAGGAGCAGGAGGAGTACAACAGGGAGCAGATCCCGTGGCAGGACATCCCGTTCAGCGACAACCAGTCCTGCATCGACCTCATCTCCTCTAAGCCCCATGGGATACTGAAGATCCTGGATGACCAGAGCTGCTttccccagGCGACAGACCACACCTTCCTCCAGAAGTGTCATTATCACCATGGTAACAACAAGATCTACCTGAAGCCAAAGATGCCCCTCCCAGAATTCACCATCAAACACTTCGCTGGCCCGGTCACCtaccaggttcaCAAGTTTCTGGATAAGAACTACGACCAGGTTGGACAGCAGGTTCTCCATCTGTTCAGCCACAGCAAGAACAAGATGGTGGCCAACCTCTTCCTTGTTCACGCGGAGGTTGTAGGTCAGCATAGAGGTCATGTGAGGAAGAGCAGCACGGTGACCCGGAGACACCAGCCCCCCACCGTCTCCACCAAGTTCACCCTGTCACTTCTGGAACTGGTAGACAAGATGGAGAGGTGCAACCCATCGTTTATACGCTGCATAAAGCCAAACAGACAGAAGGAGCCAGGTGTGTTTGAGACGGAGCTGGTCGGCAGTCAGTTGAGGTATTCTGGTATCTTGGAGACCATCAGGATCCGGAGAGAGGGTTACCCTGTTAGACTGGCCTTCAACATCTTTCTGTTCAGgtatCAGTCCCTGGTGGGGACAGCCTCCTCTAACCTGTGTGTGTCAGGTATCAGTCCCTGgTATCAGTCCCTGGTGGGGACAGCCTCctctaacctgtacAAGTCTCTGGTGGGTGTGAAGCAGACTCCAGCTCCTGATGGGGAGAACTGTGTCATCATGCTCAGCAAACTGGTTCCCCTCCGACCCGGGGCCTACCAACTGTTTCTGAAGGAGGACGTGTACCAGTTTTTGGAGTCTAAGAGAGAGCGTGTCCGTCAGGTGGCGGCCCTCACCCTGCAGAGATACACACGCATGTTCTTTGTCAGGAAACGATACAAGGAGTTCAGAACCAAGATCATCAGACTACAGGCCTACTGTAGAGGCTTCCTCACCAGgaaGCGCTATTTGAAGATGAGAAAGAGTCTGGTCAAGTTTCGTTCTCTCATCCACATGTACGTCACCCGCAAGAGATACATCAAGATGAAGCTGGAGGCCCGCAGgaaagcagaggaggagaggaggaggagagaggaggagctgaCGAAGAGAGAGGTGGTTAACGTCACACACCTGGTGATCCCTGCCGAGCTTGGCTCTTTACTGCAGGCTGCATCaggTGGCAGAGAGCTCCATTCTGAGtgtctagctctggtccaggcaCCACACATCCAGGAGCAGAACCAGCTGACTCTGCCGCTGGACATCAACGACTACCCCTTCAGCCGCTACGCACAACTCTACTTCAGGGAGCCTATGTTTGGGATGCTAACGGTTCCCTTGGAGAGGACCCTGACGTACACAGATGAGGACCTCCGACAGGAAGCTCTGGAGCTGTTTATTATGATCCTGAGGTTCATGGGCGACCCCCACCTGAATGGGGCTCAGGAGAACCTGTTTGGGAACTACATCATCCAGAGAGGACTGGCCAATCAGGGCCTGCGAGACGAGATCCTGGCTCAGCTGGCCAACCAGGTGTGGCGGAACCCTAACCATGACAACGCGGAGAGaggctggctgctgctgctggggtgTGTCTGCtgcttcctcccctcctccaggctgcacacacacctactgaaGTTTGTGTCTGACCACGCCCCTGCTGGTTGCCGGGCACTGCTGCAGCACCGGCTGATCCAGGCCAATCAGAAGTCCCGGCTGTTATCAGGCTCCGCCCCTGAGACAGCACGCACCTATCCACTGTCTCTGTTAGAGTGGACAGCCAATAGGAAGAGGGCTAACATGGTGCTACAGGTGTCCTGTTTCGACGgAGAATCGTTCCTGTGTCCCGTACAATCCTGGACCAGTGGGGAAGATCTGGCGGGAGACATCCTGcgacacaggGGAGTGTGTGAGGCGTGGAGGGGGTTTTCTATACTGATGAAGGAGCATGGGCAGTGGGCGGAGCTAGCCGGTCATGATTACGTCATGGATCTGATCTCAGACTTGGAGCTGCCGTCCGACTTCCCCAAACAGAAGAGTTACTTCATCATCTCAGCTGAGGATCCTAATAGGGTTCGAACTAACGCCAGCCTGTGagtccaaacacacacaaacccaaacCCTTCACTGGGGAGCTA

Function

NR:

description
LOW QUALITY PROTEIN: unconventional myosin-XV

GO: NA

KEGG:

id description
K10361 MYO15; myosin XV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972238.1 True 3497 mRNA 0.53 33 542589 642829

Neighbor

gene id symbol gene type direction distance location
LOC110514366 drg2 coding upstream 74447 439669 ~ 468142 (+)
LOC110517035 LOC106593794 coding upstream 137982 373646 ~ 404607 (+)
LOC118947111 LOC106592188 coding upstream 177294 357340 ~ 365295 (+)
LOC110516851 LOC103393300 coding upstream 188015 303920 ~ 354574 (+)
LOC110513171 LOC106592102 coding upstream 257036 244305 ~ 285553 (+)
LOC118947105 NA coding downstream 46 642875 ~ 712223 (+)
LOC110513986 LOC106595859 coding downstream 69677 712506 ~ 758405 (+)
LOC110516979 llgl1 coding downstream 128380 771209 ~ 871700 (+)
LOC118947106 NA coding downstream 140160 782989 ~ 785506 (+)
LOC110512918 LOC106602080 coding downstream 341459 984288 ~ 1012248 (+)
G2337550 NA non-coding upstream 22577 519194 ~ 520012 (+)
G2337542 NA non-coding upstream 69571 472752 ~ 473018 (+)
G2337530 NA non-coding upstream 88377 453742 ~ 454212 (+)
G2337531 NA non-coding upstream 93252 448446 ~ 449337 (+)
G2337525 NA non-coding upstream 105141 436642 ~ 437448 (+)
G2337578 NA non-coding downstream 12469 655298 ~ 658097 (+)
G2337580 NA non-coding downstream 16288 659117 ~ 659740 (+)
G2337583 NA non-coding downstream 24785 667614 ~ 669974 (+)
G2337594 NA non-coding downstream 84835 727664 ~ 728700 (+)
G2337540 NA non-coding downstream 119009 761838 ~ 762050 (+)
LOC110513632 LOC106593935 other upstream 357141 165852 ~ 201735 (+)
G2338043 NA other downstream 398131 1040960 ~ 1041498 (+)
G2338054 NA other downstream 427813 1070642 ~ 1083082 (+)
LOC110516613 tnrc18 other downstream 630313 1236948 ~ 1350911 (+)

Expression


Co-expression Network