LOC118947105


Basic Information

Item Value
gene id LOC118947105
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493663.1
NCBI id JAAXML020000320.1
chromosome length 1654043
location 642875 ~ 712223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972239.1
GGTTCATCAGGGAAATGGTGGGCTCTGATTGGCCCAACACACTAATCACccagcctgtttgtgtgtgaccAGAACTCTGTTTGGCAGTGGTTTTGACAGTGATGAAGAGCTGCCCCCGCCCTTCCTCAGCACCACCCAACCTGCGTACAGCCTGCCAGGCTCTGACGGATACTCCAgccacgTGGAGTCTGATGTGTTCAGCGATGGTCAGACTCAGAGAGGGGTGGATCGCTACCTGGACAGCCTCTTCAACCCTGTGTTATCAGACGGCAGCACGGACCTGGACAAGCCAGCCAGTATGACAGGCcggatgaagggaggaggaggaataggaggaggagaggaggagaggggtaaggcCCCCTCCAGCAGACCATATCCAGCAGGACTACAGCCcggaggtTCTCCAGAACAGACAGGGATGTCTCAGCAGCAACAGACCATCATCAACCAGCAAGCCATCATACTGGCCCAGCAGATGACCATGCAGGCCATGGCTTTCCAGCAGCAGATGTTGTCTTCCTTCCCCCTCGCCCCCCAGGCCCCTCCCACACAACCAAGCCCCCGCACCTCCAGCCATTGTTAA

Function

NR:

description
LOW QUALITY PROTEIN: unconventional myosin-XV

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972239.1 True 586 mRNA 0.58 6 642875 712223

Neighbor

gene id symbol gene type direction distance location
LOC110518409 LOC103147439 coding upstream 46 542589 ~ 642829 (+)
LOC110514366 drg2 coding upstream 174733 439669 ~ 468142 (+)
LOC110517035 LOC106593794 coding upstream 238268 373646 ~ 404607 (+)
LOC118947111 LOC106592188 coding upstream 277580 357340 ~ 365295 (+)
LOC110516851 LOC103393300 coding upstream 288301 303920 ~ 354574 (+)
LOC110513986 LOC106595859 coding downstream 283 712506 ~ 758405 (+)
LOC110516979 llgl1 coding downstream 58986 771209 ~ 871700 (+)
LOC118947106 NA coding downstream 70766 782989 ~ 785506 (+)
LOC110512918 LOC106602080 coding downstream 272065 984288 ~ 1012248 (+)
LOC118947114 NA coding downstream 315211 1026254 ~ 1028187 (+)
G2337570 NA non-coding upstream 59637 582792 ~ 583238 (+)
G2337566 NA non-coding upstream 64540 573889 ~ 578335 (+)
G2337560 NA non-coding upstream 78147 563787 ~ 564728 (+)
G2337558 NA non-coding upstream 96199 546428 ~ 546676 (+)
G2337550 NA non-coding upstream 122863 519194 ~ 520012 (+)
G2337594 NA non-coding downstream 15441 727664 ~ 728700 (+)
G2337540 NA non-coding downstream 49615 761838 ~ 762050 (+)
G2337847 NA non-coding downstream 50223 762446 ~ 763064 (+)
G2337849 NA non-coding downstream 51428 763651 ~ 764359 (+)
G2337851 NA non-coding downstream 52643 764866 ~ 767716 (+)
G2337538 NA other upstream 89694 551667 ~ 553181 (+)
LOC110513632 LOC106593935 other upstream 457427 165852 ~ 201735 (+)
G2338043 NA other downstream 328737 1040960 ~ 1041498 (+)
G2338054 NA other downstream 358419 1070642 ~ 1083082 (+)
LOC110516613 tnrc18 other downstream 560919 1236948 ~ 1350911 (+)

Expression


Co-expression Network