LOC118947106


Basic Information

Item Value
gene id LOC118947106
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493663.1
NCBI id JAAXML020000320.1
chromosome length 1654043
location 782989 ~ 785506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041764.1
aaaaaagtgttaaacaaatcaaaatatattttatatttgagactcttTGCCCTGATGACATCTCTGCTCTCTCCATATAAGAACAAGAGTGGCCCAACAGCAGTAGGCATCAATTATAATAGTAGTGGTGAAATGGGATCAGGGCTGAGTAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGTATCAATGATAATAGTAGTGGTGAAATGGGATCAGGGCTGAGTAAGGTATCAATGATAATAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGCATcaatgataatagtagtagtgaaATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGGTGAAATGGAATCAGGGCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATCAGGTCTGAGTAAGGCATCAATGATAATAGTGGTTAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGCATCAATGATAATAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGGATCAATGATAATAGTAGTGATGAAATGGGATCAGGGCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAAGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTA
>XR_005041765.1
aaaaaagtgttaaacaaatcaaaatatattttatatttgagactcttTGCCCTGATGACATCTCTGCTCTCTCCATATAAGAACAAGAGTGGCCCAACAGCAGTAGGCATCAATTATAATAGTAGTGGTGAAATGGGATCAGGGCTGAGTAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGTATCAATGATAATAGTAGTGGTGAAATGGGATCAGGGCTGAGTAAGGTATCAATGATAATAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGCATcaatgataatagtagtagtgaaATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGGTGAAATGGAATCAGGGCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGCATCAATGATAATAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGGATCAATGATAATAGTAGTGATGAAATGGGATCAGGGCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGTAAGGCATCAATGATAATAGTAGTGGTGAAATGGGATCAGGTCTGAGTAAGGGATCAATGATAATAGTAGTGATGAAATGGGATCAGGGCTGAGTAAGGTAGTAGTGAAATGGGATGAGGTCTGAGTAAGGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTAGTGAAATGGGATCAGGGCTGAGTAAGGCATCAATGATAATAGTAGTGATGAAATGGGATCAGGTCTGAGTAAAGTAGTAGTGAAATGGGATTAGGTCTGAGGAAGGTAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041764.1 False 2348 mRNA 0.42 3 782989 785506
XR_005041765.1 True 2159 mRNA 0.41 3 782989 785506

Neighbor

gene id symbol gene type direction distance location
LOC110513986 LOC106595859 coding upstream 24584 712506 ~ 758405 (+)
LOC118947105 NA coding upstream 70766 642875 ~ 712223 (+)
LOC110518409 LOC103147439 coding upstream 140160 542589 ~ 642829 (+)
LOC110514366 drg2 coding upstream 314847 439669 ~ 468142 (+)
LOC110517035 LOC106593794 coding upstream 378382 373646 ~ 404607 (+)
LOC110512918 LOC106602080 coding downstream 198782 984288 ~ 1012248 (+)
LOC118947114 NA coding downstream 241928 1026254 ~ 1028187 (+)
LOC118947115 NA coding downstream 244451 1029815 ~ 1031671 (+)
LOC110512931 cpsf4 coding downstream 354749 1140255 ~ 1172005 (+)
LOC118947107 NA coding downstream 388318 1172354 ~ 1174397 (+)
G2337854 NA non-coding upstream 13397 769306 ~ 769592 (+)
G2337851 NA non-coding upstream 15273 764866 ~ 767716 (+)
G2337849 NA non-coding upstream 18630 763651 ~ 764359 (+)
G2337847 NA non-coding upstream 19925 762446 ~ 763064 (+)
G2337540 NA non-coding upstream 20939 761838 ~ 762050 (+)
G2337881 NA non-coding downstream 22683 808189 ~ 808706 (+)
G2337898 NA non-coding downstream 79180 864686 ~ 865608 (+)
G2337903 NA non-coding downstream 90550 876056 ~ 877079 (+)
G2337857 flii non-coding downstream 96159 881665 ~ 882691 (+)
G2337904 NA non-coding downstream 99409 884915 ~ 885284 (+)
G2337538 NA other upstream 229808 551667 ~ 553181 (+)
LOC118947111 LOC106592188 other upstream 422548 357340 ~ 365295 (+)
LOC110516851 LOC103393300 other upstream 449434 303920 ~ 354574 (+)
LOC110513632 LOC106593935 other upstream 597541 165852 ~ 201735 (+)
G2338043 NA other downstream 255454 1040960 ~ 1041498 (+)
G2338054 NA other downstream 285136 1070642 ~ 1083082 (+)
LOC110516613 tnrc18 other downstream 487636 1236948 ~ 1350911 (+)
G2338165 LOC106591863 other downstream 713172 1498678 ~ 1500451 (+)

Expression


Co-expression Network