LOC110512918 (LOC106602080)


Basic Information

Item Value
gene id LOC110512918
gene name LOC106602080
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493663.1
NCBI id JAAXML020000320.1
chromosome length 1654043
location 984288 ~ 1012248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972241.1
GCGAAGAGTATCTATTTTCAAGATTGAAATTGTGATTCATAATCTTAAATCATGTTGAATGTGTAATATTAGGTTTGTCATTTTAGGACAGATAGCTACTTCCTTATGTGAGCTGGTCACGTGGTAACTACCAGCGGATTTTAATATGGCTACGGTCAGGATGTACATTTAACATTAAATAGTTTCACCGTATTTACTACTGGGACTTTATTATACCAGTGCATGACGGGCCACTGCCGATATTACCCGGTAACGGTGCACGATTCCCCGGACGAGCAATGTGTCATTGATGGGGTGACGGGATACGGTCGTGTTCCGTTACGCGTCGTCTGCTTGCCAGATAACTGTCTTGACGTCGGTACTGTACGGGGgacggagccagagagatagTCCCGGTGTTAAGTGCTATTGTTTATATACAgcggtgacagacagacagcctttgGTCAGATGTCATGTTGATGTGTGGCCTTCCTGCATCGTATTTTATCATCATGGACAGACAGGTGAAGACCACTCCCAGCTGGTAGAGGTAACgggacgcagacagacagacaaccgtCAGTGTCGTGGACTGTTACTCCCAGCGAGtagagggatacagacagacagacggacagtcaGACATCTAGCCTAGTGGATGGACTTCCTCTGACGTCAAAGCTGACCCAAGCCCGGTCCAGAGAAAGATGATTGGTGCCCCAGACGTGGTGGCGTTTACTAAGGAGGATGATTTTGGGGAGGTAGGGTACCCCAACCCCTGGGTGGTGCCAGAAgagttctctgtccctctgttcccATCGAATAACAACGCCAACCCCTGGGCCAAGACGTCATACGCCAAGTTCACTAAGGACTTCATCCTCATATCAGAGTTCTCTGAGCAGGTGGGCCCCCAGCCTCTTCTCACCATTCCTGACGACCCGAAGGTGTTTGGGACCTTTGACCTGAACTACTTCAGTCTGAGGATCATGTCTGTTGACTACCAGGCCTCGTTCGTAGGACACCCCACCGGCAGCGGATACCCACGACTCAGTTTTGTGGAGGACTCCCGGGTGGTGCTGGGTGACTCTAAGGAGGGGGCGTTTGCCTACGTTCACCACCTGACCCTGTATGACCTGGAGGCCCGAGGCTTCGTCCGCCCATTCTGCATGGCCTACGTCTCTGCCGACGAGAGGAAGATCATGCTGCAGTTCCAGGAGCTGTCACTCCTCTTCTCCCGCGCCTCCGAGTGCCTGAAGACCGGAAACCGACGGGCCTTCGCCCGCGAGCTGCAGAGGAAGCTACGTGACCTGGAGTACACAAGGTCTGTTCTGCAGAAAGAGGAGGGGCTTCAGCGGGAGGCGGGGCCTCAGGGGTGTTACTCCGCCCGCGCGGTGGACAAGGCCAATGAGCTTGCGGCGATGGAGAAGAGTATCTACGAGCACCGAGACCTGCTGAGGCAGATCACCTCGTACCCCCTCCGCCCCCGCCGAGACCCCCACGCCGCACACTGTCAACACTGTGTCACAgagtcacagagacacagagacgcgCCGCCTGGCCCCGACCGTGACACGGGGGAGGAGGCGGGACAGAGGAGGCAGTCCTACACCCCGCAGCTCATCAAGGGGAAGTCGGCCAAGTGTTTCGCCAAGCGTCTGAAGAACCTGACGGAGTTATGCGAGGAGAGGTTCTACGAGGCCACCGTGGAACTACTCAACCACACAGAGCGGTGTTTCCGGGGGGACTTGTGTTACCTGTACACCCGCCGCCTGGACCGAGCGCTACGCAGGAAGCAGAACATCACCAACTTCCTGTTTGAGGAGGAGctaggggaggaggaagaggaagtagCGGTGCTGGGAAGAATCTTCTGTTCTCTCAACCACACAGTGGGGACGGACTCACATATACACACCCCTTCCATCGTGCTTTGCCCCGAGCCACCGGAGTCTGTGGAGGTTCTGGAGGTGAACCCTCCCTGCCCTGATAACTCTGCCCAGCAGAGTGAGGCCCTGACCGGGGAGGAGAGGCTGGAGTCGTCACTCTCTGATCTGACCATGGAGACGCAGGACCAGGAAAGCTCTGAGGAGAATAAGGACAGCTTTAGTAGTgacaggagtggaggagaggaggaggaggagggacggGAGGGAGGAGATCAGACCCCTGTTTTTCTGCTGGAggctgaggaggggggagagggtgagacacaccgtgtgtgtgagagggagggagaggcagaaggaggggctgagacagaggagggaggggctgagacagaggagggaggggctgagacagaggagggtgatgGACAGAGAGTTCCTGACCCTGAGTTACTGGTCCAGATGGACACGGCCTGCTGCATGTCTCAGGAGGGCTTCCTGTACAACTCTTCTCCCCCAGACACGCTGCCTGCTTCTGGGCTGCAGCCCGGCTCTCTACCCCTTCCCCTGGTGGTCAACCAGGAGCCCCAGGCCCTGCTGCCGGTCCAGGGGGACTACGGCCTGGGTTCCCCCCACTGCCCGAGCCCTGGGGCTGGGCTGGACCTGCCCGTCTCCTCCTCGGGAGATACCACCTCCAGGGGTTCGGACCAGGACGGGTGGGACTGTACCATGTCAGCGTCTACGGGGTCCGAACGGGCCGGCTCACCTCTGGGGTACGGAGGGTTGGTAACGCTGAGGCAGAAGAAGAGGGCCGGGCAGGGAGCGCTCAGGTTTGTGCGTCAGTATCCGTTTGCCCTGCATGCCCTGTGGTCCCTACTGAGTGGTCGAACCCTGGTGGTCCTGGGATCTGAGGAGGGGAGGGTCAGGAGGCTGGTGTCCGCTCTAGCCCTCTACGTGCCTGGACCCGGGCGCTGTGGGGAGAGGGTCCAGCCCTGGTTGTCCTGCCCCTTCAGCCTCACTGACCTACAGCGATGGAAACTCATAGGACTGCAGAGGATGGCGTCTCCCGTGGGGACCAGCatgctctgctctctgtctcgctacaGCCGTTACATCTCCGTCCTGGACGCCGACCGGAAGACCCTCCGTTGCCCCGGCTACCGCGGAACCCTCCTGGCCAACGTGGCGGACCACCGTACCCGTCTGCGCCGAGGTTCCACCTACTTCCTTCATCTCCAGAACGTGCTCAGTAGACTGGCTTCCCGGGCCTTCCTCCTTAGCTTTACGCATCACCTCCACCTTCCCATCAGCCACCTGGAGCAGAGacaggaagtggaggagaggacgagaggctTCCTGAGGGATCAGCTCAGGCTTGGGGAAGACGACTGTTCCATCCTGATGTACCTGAGTCAGCTGATCACACAGCACTACCTGGACAGTACCTCAGGAGGAGCTGTTACTACACAACCCCACCTGGAGAAGGACAACACGCCTGGAACCACACAGCAGGACCTGGAAGCTAACAACATACTAGACCCTGCCACAGGGGGTGCTGTAAACCAACAAGACCCTGAGTCTAATACTGGAGGCAGAGTGAATACAGGGCAGTACCTAGACCCTACCACTGGGGGCGCTATAACCCCAGAGACGGGCGTAGAGCCTACCACTGGGGGCGCTATAACCCCAGAGACGGGCGTAGAGCCTACCACTGGGGGCGCTATAACCCCAGAGACGGACGTAGAGCCTACCACTGGGGGCGCTATAACCCCAGAGACGGGCGTAGAGCCTACCACTGGGGGCGCTATAACCCCAGAGACGGGCGTAGAGCCTACAACTGGGGGCGCTATAACCCCAGAGCAGTACCTAGACCCTACCACTGGGGGCGCTATAACCCCAGAGCAGTACCTAGACCCTACCATCCATCAGTCTGCTACTAGGAGCAGAGCTCCACCCAGCTTCACCTTTAACTACACCACCAGTCTCCTATACAAGATCTGATCTGACGGGGGTTGAATCTCCTGAGAGCCTTCAAGTCCTCAAAACAACACCGGAGGAGACAGATCTGCGGTAGATTCACTCTGGGTTGGAGACGGGagggcctgtctctgtctcctaggTAATCAGGAGAGACTGagggcctgtctctgtctcctaggTAATCAGGAGAGACTGagggcctgtctctgtctcctaggTAATCAGGAGAGACTGagggcctgtctctgtctcctaggTAATCAGGAGAGACTGagggcctgtctctgtctcctaggTAATCAGGAGGGACTGagggcctgtctctgtctcctaggTAAccaggagagactgagggggtTTAGTGAATGTAATGTAGCAGTGTTCATGCTGTCCATCAAGTCCTCCTTCCGATGAATGCCCTaacctcggggggggggggggggggacctggaCGCTGATTTAGATTGAATGACAAGTCACTATGAACCGTCCTTCTGATCTGAgcgagaagtgtgtgtgtgaaacgtTAATATGAGgcatgttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacgttaaTATGAGgcatgttctgtgtgtgttcgtGCCGGTCTGTCTCCCGTGACGTTGCATGTTGTCCACGGAACCACAGTACTACTACAGTTGCTTAGGAACGTTGACGTTGTAAAAAGATCAGATTGGTGCCCATTCAACACATCTAATCTAACAAAAGAGGATAATTTGTCAAATCTGTCACGATTTATGTTTTGTAACAAACCCACGATGTAGTTACTTAAGTCCCGATTATATTGGACTGTTTTCCCTGCGTAACATGTAGAAGTTGTCCCtttttcaggtttagaagaagaGGTGACCgctaaatgctaactcccatccgtataagctggtagcatagctagcatacagaaatcGTTGATGGTAgtcatgtcatttaaaaaaaaaacgaatgCACTTGATTGGTGACGATGACATGAGTTGATGTTAACCAAGCATTATACCTCAACACCGTGTGAAATAGACAATAGCTTAACTGTAGGCTAATTTAGCtttgtcgcccccccccccccccccccccccaatgaggAAGCTTGGGGATCTTAAACCCCCGACGCGTTTCCATGGCAACGGCGTTCCCATTGTTTTGTTCAGTTGGATTTAGCTCGTTACTGCATCTGTAACCAACGCCGTGTATATAAACTCTGGACTGCTGATGCTTTGTTTTGGCCATTTAGAGGCTTtcagccaccggtcggccatttTGACAGTCCTCCATAGGattgaatggaattctacagcaTTTCAATTAAAGGTTTCGAGGACCAAATTACATGTATTTcagtatttgttgttgttgtagtttgggacagtaacattagtatttttaaggtgggggggtggggacgtttattttttttagtGTAGCTCACGTGTAAAATTATACATTTAAGGTGTATAATGGAATAAACGTGTCAGAAAT
>TU2675992
GGCTACGGTCAGGATGTACATTTAACATTAAATAGTTTCACCGTATTTACTACTGGGACTTTATTATACCAGTGCATGACGGGCCACTGCCGATATTACCCGGTAACGGTGCACGATTCCCCGGACGAGCAATGTGTCATTGATGGGGTGACGGGATACGGTCGTGTTCCGTTACGCGTCGTCTGCTTGCCAGATAACTGTCTTGACGTCGGTACTGTACGGGGgacggagccagagagatagTCCCGGTGTTAAGTGCTATTGTTTATATACAgcggtgacagacagacagcctttgGTCAGATGTCATGTTGATGTGTGGCCTTCCTGCATCGTATTTTATCATCATGGACAGACAGGTGAAGACCACTCCCAGCTGGTAGAGGTAACgggacgcagacagacagacaaccgtCAGTGTCGTGGACTGTTACTCCCAGCGAGtagagggatacagacagacagacggacagtcaGACATCTAGCCTAGTGGATGGACTTCCTCTGACGTCAAAGCTGACCCAAGCCCGGTCCAGAGAAAGATGATTGGTGCCCCAGACGTGGTGGCGTTTACTAAGGAGGATGATTTTGGGGAGGTAGGGTACCCCAACCCCTGGGTGGTGCCAGAAgagttctctgtccctctgttcccATCGAATAACAACGCCAACCCCTGGGCCAAGACGTCATACGCCAAGTTCACTAAGGACTTCATCCTCATATCAGAGTTCTCTGAGCAGGTGGGCCCCCAGCCTCTTCTCACCATTCCTGACGACCCGAAGGTGTTTGGGACCTTTGACCTGAACTACTTCAGTCTGAGGATCATGTCTGTTGACTACCAGGCCTCGTTCGTAGGACACCCCACCGGCAGCGGATACCCACGACTCAGTTTTGTGGAGGACTCCCGGGTGGTGCTGGGTGACTCTAAGGAGGGGGCGTTTGCCTACGTTCACCACCTGACCCTGTATGACCTGGAGGCCCGAGGCTTCGTCCGCCCATTCTGCATGG
>TU2675989
GGGGCGCTATAACCCCAGAGCAGTACCTAGACCCTACCACTGGGGGCGCTATAACCCCAGAGCAGTACCTAGACCCTACCATCCATCAGTCTGCTACTAGGAGCAGAGCTCCACCCAGCTTCACCTTTAACTACACCACCAGTCTCCTATACAAGATCTGATCTGACGGGGGTTGAATCTCCTGAGAGCCTTCAAGTCCTCAAAACAACACCGGAGGAGACAGATCTGCGGTAGATTCACTCTGGGTTGGAGACGGGagggcctgtctctgtctcctaggTAATCAGGAGGGACTGagggcctgtctctgtctcctaggTAAccaggagagactgagggggtTTAGTGAATGTAATGTAGCAGTGTTCATGCTGTCCATCAAGTCCTCCTTCCGATGAATGCCCTaacctcggggggggggggggggggacctggaCGCTGATTTAGATTGAATGACAAGTCACTATGAACCGTCCTTCTGATCTGAgcgagaagtgtgtgtgtgaaacgtTAATATGAGgcatgttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacgttaaTATGAGgcatgttctgtgtgtgttcgtGCCGGTCTGTCTCCCGTGACGTTGCATGTTGTCCACGGAACCACAGTACTACTACAGTTGCTTAGGAACGTTGACGTTGTAAAAAGATCAGATTGGTGCCCATTCAACACATCTAATCTAACAAAAGAGGATAATTTGTCAAATCTGTCACGATTTATGTTTTGTAACAAACCCACGATGTAGTTACTTAAGTCCCGATTATATTGGACTGTTTTCC
>TU2675982
GGGGATCTTAAACCCCCGACGCGTTTCCATGGCAACGGCGTTCCCATTGTTTTGTTCAGTTGGATTTAGCTCGTTACTGCATCTGTAACCAACGCCGTGTATATAAACTCTGGACTGCTGATGCTTTGTTTTGGCCATTTAGAGGCTTtcagccaccggtcggccatttTGACAGTCCTCCATAGGattgaatggaattctacagcaTTTCAATTAAAGGTTTCGAGGACCAAATTACATGTATTTcagtatttgttgttgttgtagtttgggacagtaacattagtatttttaaggtgggggggtggggacgtttattttttttagtGTAGCTCACGTGTAAAATTATACATTTAAGGTGTATAATGGAATAAACGTGTCAGAAATGA
>TU2675983
GGGGATCTTAAACCCCCGACGCGTTTCCATGGCAACGGCGTTCCCATTGTTTTGTTCAGTTGGATTTAGCTCGTTACTGCATCTGTAACCAACGCCGTGTATATAAACTCTGGACTGCTGATGCTTTGTTTTGGCCATTTAGAGGCTTtcagccaccggtcggccatttTGACAGTCCTCCATAGGattgaatggaattctacagcaTTTCAATTAAAGGTTTCGAGGACCAAATTACATGTATTTcagtatttgttgttgttgtagtttgggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972241.1 False 5359 mRNA 0.55 7 984288 1012246
TU2675992 False 1008 TUCP 0.54 3 984435 989965
TU2675989 False 817 lncRNA 0.49 2 1010599 1011571
TU2675982 False 389 lncRNA 0.41 1 1011860 1012248
TU2675983 True 275 lncRNA 0.44 1 1011860 1012134

Neighbor

gene id symbol gene type direction distance location
LOC110516979 llgl1 coding upstream 112588 771209 ~ 871700 (+)
LOC118947106 NA coding upstream 198782 782989 ~ 785506 (+)
LOC110513986 LOC106595859 coding upstream 225883 712506 ~ 758405 (+)
LOC118947105 NA coding upstream 272065 642875 ~ 712223 (+)
LOC110518409 LOC103147439 coding upstream 341459 542589 ~ 642829 (+)
LOC118947114 NA coding downstream 15188 1026254 ~ 1028187 (+)
LOC118947115 NA coding downstream 17711 1029815 ~ 1031671 (+)
LOC110512931 cpsf4 coding downstream 128009 1140255 ~ 1172005 (+)
LOC118947107 NA coding downstream 161578 1172354 ~ 1174397 (+)
LOC118947109 slc29a4 coding downstream 188283 1200529 ~ 1226091 (+)
G2337934 NA non-coding upstream 5393 971652 ~ 978895 (+)
G2337933 NA non-coding upstream 13435 970602 ~ 970853 (+)
G2337930 NA non-coding upstream 20110 963164 ~ 964178 (+)
G2337924 NA non-coding upstream 34467 947680 ~ 949821 (+)
G2337914 NA non-coding upstream 37412 946292 ~ 946876 (+)
G2337916 NA non-coding downstream 6306 1018552 ~ 1019039 (+)
G2338039 NA non-coding downstream 21162 1033408 ~ 1033900 (+)
G2338040 NA non-coding downstream 29843 1042089 ~ 1042965 (+)
G2337538 NA other upstream 431107 551667 ~ 553181 (+)
LOC118947111 LOC106592188 other upstream 623847 357340 ~ 365295 (+)
LOC110516851 LOC103393300 other upstream 650733 303920 ~ 354574 (+)
LOC110513632 LOC106593935 other upstream 798840 165852 ~ 201735 (+)
G2338043 NA other downstream 28714 1040960 ~ 1041498 (+)
G2338054 NA other downstream 58396 1070642 ~ 1083082 (+)
LOC110516613 tnrc18 other downstream 260896 1236948 ~ 1350911 (+)
G2338165 LOC106591863 other downstream 486432 1498678 ~ 1500451 (+)
G2338389 NA other downstream 583060 1595306 ~ 1599823 (+)
G2337923 NA non-coding upstream 5221 1003225 ~ 1005378 (+)
LOC110512918 LOC106602080 other upstream 20634 984288 ~ 1012248 (+)

Expression


Co-expression Network