XLOC_004228 (lims1)


Basic Information

Item Value
gene id XLOC_004228
gene name lims1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33598213 ~ 33618612 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008079
attgtcacattttatttgctgtattacatttcaacattattttttttcttatttaccacATGTACATAGACATTACATAAAACGTTAAGTCATTATTATTTACCtgaaaatactgtttattttagtGTTGACTTGTGGGAATTTAACAGCCATTACTTCAGTCTTCTTTGTCACATAATTCTTGACAATCTAATTTGCTAATTGCATCTACATTTGTTTTGTAGCATAGGAAAGCAATGGAGTCTGACTAGCTTTACTGTATTAGCTGACTGTGTCTGCTGTTTGTTTCTCCTGATATTGATTTTATTGATTCTCCTGACAGTAACATGGCCAATGCCCTGGCAAACGCCTCATGTGAGCGGTGTAAAAGTGGATTTGCCCCAGCAGAGAAGATAGTCAACAGTAATGGTGAGCTCTATCATGAGCAGTGCTTCGTCTGCGCCCAATGTTTCCAGCAGTTTCCTGAAGGGCTCTTTTATGAGTTTGAGGGAAGGAAGTACTGTGAGCATGATTTCCAGATGTTGTTTGCTCCCTGTTGTCACCAGTGTGGAGAGTTTATAATTGGGCGTGTGATTAAGGCCATGAATAACAGCTGGCACCCGGACTGTTTCTGCTGTGATATCTGCCAAGCGGTGCTCGCCGATGTTGGATTCGTCAAGAACGCCGGCCGCCATCTCTGCCGCCCGTGTCATAACCGTGAGAAAGCTCGAGGCCTAGGGAAGTACATCTGTCAGAAGTGTCACGCGATCATCGAGGAGCAGCCCCTGATTTTCAAAAATGACCCCTATCACCCGGACCACTTCAACTGCAGCAACTGCGGtaaagAGCTGACCGCTGATGCCCGCGAGCTGAAAGGGGAGCTCTACTGTCTGCCCTGCCATGATAAGATGGGTGTGCCGATCTGTGGAGCCTGCAGACGGCCAATCGAGGGCCGAGTGGTCAATGCCATGGGCAAACAGTGGCACGTGGAGcatTTTGTCTGTGCTAAATGTGAGAAGCCTTTCCTGGGACACCGCCATTATGAGAGGAAAGGTCTTGCTTACTGTGAGACTCACTACAATCAGCTCTTTGGTGATGTCTGTTACCACTGCAACAGAGTGATCGAAGGAGACGtggTTTCGGCTTTGAATAAGGCCTGGTGTGTGAACTGCTTCTCGTGCTCAACCTGTAACACCAAACTCACCCTGAAGAACAAGTTTGTGGAGTTTGACATGAAGCCGGTGTGTAAGAAATGCTACGAGAAGTTTCCTCTGGAGCTGAAGAAGAGGCTGAAGAAGCTGGCCGAGACTTTGGGCCGCAAGTAAAACTCATCGTAATCATCATCTGTGCTCAAATCAAcagaccaaaccaaaccaaagcgCAGATCATCTTGGAATAGTTGTCTTACTTTATCCTACTTAAACTTTAAGTGTGTTTTTCTACCACAGAAAGTATTGCAGGCAGATTTTTACTGGTTTCACGCTAATGGATGCGCACGTGTCTTAAAAAAACCTGCAAACTAATCAAAACAGTTACCTTTATATTGTTAATGATAAATATACAGTCGTGGAAAAAGGAGACTAATAAATCTTGAGAAACTGAGTATGGATTTGAggaaaatgttatttgttttattcaataaaggatttctgataacatttcttttaaacgttaaatcaaaatattgtaaatagcaAATTGCTAAGTggttagaaaaaaataatgtcttattttgttgtctaaaattaaatgtaaacttGGCTGAAAATATGCCACtttgttattttaagcaaaacatttcatcttaaaaatcaaaataaatgtaatcagacatttacagaataaatacattacctgccaacactcctgttttttcccaggagtctcctgtatttcccatctcccgccacccttcCCTTTTGTTACTTTGCCCAGAAAACTCACGTAATTCCACCCCACCCCCTTTTTCTCAtcttttggtacagtctgtaacaccctTGGTGGTTAACTTTAGTAAAGTATCCGATCGCTGCAGCTGcccttcttttttttgtttttttttcatctatattataataataataataataattattattgttattattataataatatagatGCCATATTTTTGTTAGACATGTTAACATTATTTAGTGTTAATTGCCAAGAAAACAGCATTTCATGAAATGaccctgtatttaaaaaaatatttcaatgattgaaattttctgaaaaaaaaaaaaaaataaatctctttGATATTTGGAAGACATTATTAAACCTTTAAAGAACAATATGGAATtaaaccatacctgccaacactcctgtttttcccgggagtctctcgtatttcagacccatctcccaccatcCTCCCATTTTGTTACTTCTCCCGGAAAACTCAACAATCACGGCTGCAGCCCGCAGCTTGATGATGTAGTTGACTACTCCCCCATCCCCTATCAACTGTATaaacccacaccaatacaccAACTATCAAGCCCCCACCCCAACCCTGGTCTCCTGGaatttcagagacaaatgttgtCAAAAACTAAACTTGCTTTATTCAAACACGtctatattttcatttaaatcagattattggtgccATATTTTGTTAGACATGTTGGTAAcagtttagtttaggtcacaattcacggtattaacaaaccattaaccaacgctactagcttaataaactactaattaagtGTTTATTAATAGTAATGTAGTAGTTGGGTTCAAGTTTTtgttaggattagggatgtagaattagatcatactttataactattgatgaacagttaatatcttaatagtaGGCGGGTAATATGACGGTTGTTAATTGCATGAATTGTGACCCAAACTAAAGTATTACTGacttgtttaaattaattaagttttaaGTGCTAAGACGATAGAATTTAATGAAATAACCCTGATGTGTAAATCTCTCTATTTGATATTTGAAAGGCATTATTAaacctttatagaataaaaccaaTATTAACACTTCACTTAAATCCTTGACCCGACCCCCCCCCCCTACACCGGTATAAACGTACATGCATGTTTATGAAGATAATGTTTGTATTGGCTGCGTTCAGACGGATTATTCGGCATGTTTTTGCTCTTTTCCTGAAGGCAGAAACTTGTGGTGTGTCTGACCGCAGGCCTGGCTTTGAAGCATCGATCTGAGAGATGTTTTTGATATTTAATGTATGCTCAGgccttgtgtttttctgtcagaaaggggatcaaaagttaATGCATGATGTAATGAGCCTGGAGGAACAAGACAACCTCTAAAGCAAAGTCTTCGCTCCACTGAACAAAGTGCTCTGGCTGTTTAATCTCCTTCTCAGCTTAAATTATCCAGCTTTATTAAAGCCCTCACTGTGTTCTCCAAATATGCAATAAATTACACCGCTTATATTACTTCTGAGAGCTTTATGAACTGTGTTGCCAGTCTTGCGTCATAACACCCTTGTCTTTTTCTATTTCGATTGAAAGTTTAGTTTTTACGACCCGCCTGCCTTCTTTTATTATGACTGAGAAAATGCCTTGAAATATAATGAACTTGTGCCTTGTTTTGTTATCTGCATTACTTTTGATGATTAATGAAACGATTGACTGAAGTCTGGAAGACTCTTTTTAAAAAGGCGATAATTAAGATTTAACCTCACTACGTTTCTACTTTATatgcttaagttttttttttttttttttatctttgattATATATTTAGCCATGTACTGTTCATGAAATGTCTTTTTACCGTTACGGTCAGCAATATTGAGCAACAGCAAAACTGCTTTGTGCTTGTCTCCTATCACTGTCTGTATTCACTGAACGATGCATTTCAGCAAAATATGTATTGACAGGCTTGCTGGCagcttttaaataatacatttcacCATGTTCTGTATGGAATATCAAAGTATATCAATAAAGTATGcactatttaatttgtttgtgtgtttattaagtTTGAAAATCAAATGAGCTCAATTTgggttctttttttaaatttggtaTTTTTAGAGGATCATTTTTCATGGCAGTAAACTCTGAAAAAAGGctcattgttggcgtgttgctattttgaggatctgAAAGAGACCAAGCTATTGACCGACTAAAAGCTGGTCtcaagtccagcgcagagtgcgttagttatgtgcctatgcaggtccaaaatgcacacaagatgtacagcaagACACAAGTATTTTACAAAAATTAACGTAAATTAACggattaaaatgttactaaaaatattattttctacataaatataaataccaCTACCTCCATGTCTTCATCATGCCTCTATGCCTTTTTTCCAGTTCATTCATGACcatctgca
>TCONS_00008080
CTCGGAAGCTCAAGCAGAGTGGACTGCGTTCTTTAGGAAAACATCTTTGTCTCCGAGAGAGAAGGGGAAAAAGTGGAAAAGCAACAGATCGGAGGGGCGTCTTATGTTGTCGAAAAACATCTGAGTCGTCTTTCAGGATTAGCCGTGCTGAAGGGGATGCTGGGGGTGTCAGAGATGACGGGCAGTAACATGGCCAATGCCCTGGCAAACGCCTCATGTGAGCGGTGTAAAAGTGGATTTGCCCCAGCAGAGAAGATAGTCAACAGTAATGGTGAGCTCTATCATGAGCAGTGCTTCGTCTGCGCCCAATGTTTCCAGCAGTTTCCTGAAGGGCTCTTTTATGAGTTTGAGGGAAGGAAGTACTGTGAGCATGATTTCCAGATGTTGTTTGCTCCCTGTTGTCACCAGTGTGGAGAGTTTATAATTGGGCGTGTGATTAAGGCCATGAATAACAGCTGGCACCCGGACTGTTTCTGCTGTGATATCTGCCAAGCGGTGCTCGCCGATGTTGGATTCGTCAAGAACGCCGGCCGCCATCTCTGCCGCCCGTGTCATAACCGTGAGAAAGCTCGAGGCCTAGGGAAGTACATCTGTCAGAAGTGTCACGCGATCATCGAGGAGCAGCCCCTGATTTTCAAAAATGACCCCTATCACCCGGACCACTTCAACTGCAGCAACTGCGGtaaagAGCTGACCGCTGATGCCCGCGAGCTGAAAGGGGAGCTCTACTGTCTGCCCTGCCATGATAAGATGGGTGTGCCGATCTGTGGAGCCTGCAGACGGCCAATCGAGGGCCGAGTGGTCAATGCCATGGGCAAACAGTGGCACGTGGAGcatTTTGTCTGTGCTAAATGTGAGAAGCCTTTCCTGGGACACCGCCATTATGAGAGGAAAGGTCTTGCTTACTGTGAGACTCACTACAATCAGCTCTTTGGTGATGTCTGTTACCACTGCAACAGAGTGATCGAAGGAGACGtggTTTCGGCTTTGAATAAGGCCTGGTGTGTGAACTGCTTCTCGTGCTCAACCTGTAACACCAAACTCACCCTGAAGAACAAGTTTGTGGAGTTTGACATGAAGCCGGTGTGTAAGAAATGCTACGAGAAGTTTCCTCTGGAGCTGAAGAAGAGGCTGAAGAAGCTGGCCGAGACTTTGGGCCGCAAGTAAAACTCATCGTAATCATCATCTGTGCTCAAATCAAcagaccaaaccaaaccaaagcgCAGATCATCTTGGAATAGTTGTCTTACTTTATCCTACTTAAACTTTAAGTGTGTTTTTCTACCACAGAAAGTATTGCAGGCAGATTTTTACTGGTTTCACGCTAATGGATGCGCACGTGTCTTAAAAAAACCTGCAAACTAATCAAAACAGTTACCTTTATATTGTTAATGATAAATATACAGTCGTGGAAAAAGGAGACTAATAAATCTTGAGAAACTGAGTATGGATTTGAggaaaatgttatttgttttattcaataaaggatttctgataacatttcttttaaacgttaaatcaaaatattgtaaatagcaAATTGCTAAGTggttagaaaaaaataatgtcttattttgttgtctaaaattaaatgtaaacttGGCTGAAAATATGCCACtttgttattttaagcaaaacatttcatcttaaaaatcaaaataaatgtaatcagacatttacagaataaatacattacctgccaacactcctgttttttcccaggagtctcctgtatttcccatctcccgccacccttcCCTTTTGTTACTTTGCCCAGAAAACTCACGTAATTCCACCCCACCCCCTTTTTCTCAtcttttggtacagtctgtaacaccctTGGTGGTTAACTTTAGTAAAGTATCCGATCGCTGCAGCTGcccttcttttttttgtttttttttcatctatattataataataataataataattattattgttattattataataatatagatGCCATATTTTTGTTAGACATGTTAACATTATTTAGTGTTAATTGCCAAGAAAACAGCATTTCATGAAATGaccctgtatttaaaaaaatatttcaatgattgaaattttctgaaaaaaaaaaaaaaataaatctctttGATATTTGGAAGACATTATTAAACCTTTAAAGAACAATATGGAATtaaaccatacctgccaacactcctgtttttcccgggagtctctcgtatttcagacccatctcccaccatcCTCCCATTTTGTTACTTCTCCCGGAAAACTCAACAATCACGGCTGCAGCCCGCAGCTTGATGATGTAGTTGACTACTCCCCCATCCCCTATCAACTGTATaaacccacaccaatacaccAACTATCAAGCCCCCACCCCAACCCTGGTCTCCTGGaatttcagagacaaatgttgtCAAAAACTAAACTTGCTTTATTCAAACACGtctatattttcatttaaatcagattattggtgccATATTTTGTTAGACATGTTGGTAAcagtttagtttaggtcacaattcacggtattaacaaaccattaaccaacgctactagcttaataaactactaattaagtGTTTATTAATAGTAATGTAGTAGTTGGGTTCAAGTTTTtgttaggattagggatgtagaattagatcatactttataactattgatgaacagttaatatcttaatagtaGGCGGGTAATATGACGGTTGTTAATTGCATGAATTGTGACCCAAACTAAAGTATTACTGacttgtttaaattaattaagttttaaGTGCTAAGACGATAGAATTTAATGAAATAACCCTGATGTGTAAATCTCTCTATTTGATATTTGAAAGGCATTATTAaacctttatagaataaaaccaaTATTAACACTTCACTTAAATCCTTGACCCGACCCCCCCCCCCTACACCGGTATAAACGTACATGCATGTTTATGAAGATAATGTTTGTATTGGCTGCGTTCAGACGGATTATTCGGCATGTTTTTGCTCTTTTCCTGAAGGCAGAAACTTGTGGTGTGTCTGACCGCAGGCCTGGCTTTGAAGCATCGATCTGAGAGATGTTTTTGATATTTAATGTATGCTCAGgccttgtgtttttctgtcagaaaggggatcaaaagttaATGCATGATGTAATGAGCCTGGAGGAACAAGACAACCTCTAAAGCAAAGTCTTCGCTCCACTGAACAAAGTGCTCTGGCTGTTTAATCTCCTTCTCAGCTTAAATTATCCAGCTTTATTAAAGCCCTCACTGTGTTCTCCAAATATGCAATAAATTACACCGCTTATATTACTTCTGAGAGCTTTATGAACTGTGTTGCCAGTCTTGCGTCATAACACCCTTGTCTTTTTCTATTTCGATTGAAAGTTTAGTTTTTACGACCCGCCTGCCTTCTTTTATTATGACTGAGAAAATGCCTTGAAATATAATGAACTTGTGCCTTGTTTTGTTATCTGCATTACTTTTGATGATTAATGAAACGATTGACTGAAGTCTGGAAGACTCTTTTTAAAAAGGCGATAATTAAGATTTAACCTCACTACGTTTCTACTTTATatgcttaagttttttttttttttttttatctttgattATATATTTAGCCATGTACTGTTCATGAAATGTCTTTTTACCGTTACGGTCAGCAATATTGAGCAACAGCAAAACTGCTTTGTGCTTGTCTCCTATCACTGTCTGTATTCACTGAACGATGCATTTCAGCAAAATATGTATTGACAGGCTTGCTGGCagcttttaaataatacatttcacCATGTTCTGTATGGAATATCAAAGTATATCAATAAAGTATGcactatttaa

Function

symbol description
lims1 Predicted to enable metal ion binding activity. Acts upstream of or within heart contraction and regulation of protein kinase B signaling. Located in Z disc and intercalated disc. Is expressed in EVL; hatching gland; heart; periderm; and polster. Orthologous to human LIMS1 (LIM zinc finger domain containing 1).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:1900026 positive regulation of substrate adhesion-dependent cell spreading biological_process
GO:2001046 positive regulation of integrin-mediated signaling pathway biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0051896 regulation of protein kinase B signaling biological_process
GO:0060047 heart contraction biological_process
GO:0005911 cell-cell junction cellular_component
GO:0005925 focal adhesion cellular_component
GO:0030018 Z disc cellular_component
GO:0014704 intercalated disc cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-236 Predicted to enable metal ion binding activity. Acts upstream of or within heart contraction and regulation of protein kinase B signaling. Located in Z disc and intercalated disc. Is expressed in EVL; hatching gland; heart; periderm; and polster. Orthologous to human LIMS1 (LIM zinc finger domain containing 1).

Ensembl:

ensembl_id ENSDARG00000026985

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008079 False 4355 mRNA 0.38 9 33598213 33612433
TCONS_00008080 True 3817 mRNA 0.39 10 33598614 33618612

Neighbor

gene id symbol gene type direction distance location
XLOC_004227 NA coding downstream 196737 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 coding downstream 399609 33190658 ~ 33198604 (-)
XLOC_004225 NA coding downstream 418418 33163180 ~ 33179795 (-)
XLOC_004224 NA coding downstream 533660 32977282 ~ 33064553 (-)
XLOC_004222 NA coding downstream 655341 32809971 ~ 32942872 (-)
XLOC_004229 NA coding upstream 58222 33676834 ~ 33688949 (-)
XLOC_004230 nxph2b coding upstream 227828 33846440 ~ 33857911 (-)
XLOC_004231 si:ch211-227n13.3 coding upstream 242565 33861177 ~ 33868908 (-)
XLOC_004232 phka2 coding upstream 251745 33870357 ~ 33919309 (-)
XLOC_004233 col6a2 coding upstream 302746 33921358 ~ 33960318 (-)
XLOC_004063 CR854846.1 misc downstream 17470535 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 20906522 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 20976446 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21006917 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21084951 12512966 ~ 12513262 (-)
XLOC_004234 CR925698.1 non-coding upstream 347546 33966158 ~ 33966272 (-)
XLOC_004235 NA non-coding upstream 373421 33992033 ~ 33993147 (-)
XLOC_004243 FO681390.1 non-coding upstream 630844 34249456 ~ 34255220 (-)
XLOC_004244 NA non-coding upstream 696913 34315525 ~ 34358689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014242 LOC106582183,LOC103353988 coding CM030128.1 CM030128.1 6109359 ~ 6124346 (-)