XLOC_004229


Basic Information

Item Value
gene id XLOC_004229
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33676834 ~ 33688949 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008831
ctgacgaagtgcttcgacatcaGTGCCACCCCTTTAATTCTGCAAGGGCTCCAAGGCCCCGCCCACAAACTGTAGCTGTATTCCTGTTGGTCAGAAGGACAGAGGGCGGGGTGGCCTTGCTCATGTCTACAGGGGCGTGTCTGAGTCAAACTGGGGCAGTCCATGCCTCCATACAGGGGTGTGGCCAGGACATCCCGTGTGCGCTGTTGAAGAGCCGACCCACATGTACGGCTACAAGTGGACCAGTGGGTGAAAGCGGAGACGACACAATCCATCGGACAAGGTAACAGACAGGCCTGCTCTCCTTCTGGAGCTGAAGAAAACGCTTCACACACATGTAGGCTCACCGAGGAGTTGTTATTACGCTTCACACACTGCATATTGCGGCTCTGCACTCCACGTTGAGCGGTTACGCATCGATTGGCTGGGAGGAGAGGACTCGGAGTGCAGGGGCCCCATGGAGACAAGCGCCACTCAAACAGATCCTTTTGCCACTCGCACatcttcacacacactctctgatgCGCAGGGCGATCGGATGGAAAGCAGTTGGACTGATGTGTGCTCCAGCCTTCAGCATGGACACACCACACTGAGCGAGTCTGGAGGCCGAGCGAACCACAGTCACTGGCCACACACACACCCCATACACctgaggaaaacacacacagagacagagagagatgtGAGGAGATGTGTTAAACTGCACTGAATATTTGAGGCAAAATTAAAAGTATTCGCCCTCCA
>TCONS_00008832
GGCGCCCATATTGGCCACCGTagagGTGCCACCCCTTTAATTCTGCAAGGGCTCCAAGGCCCCGCCCACAAACTGTAGCTGTATTCCTGTTGGTCAGAAGGACAGAGGGCGGGGTGGCCTTGCTCATGTCTACAGGGGCGTGTCTGAGTCAAACTGGGGCAGTCCATGCCTCCATACAGGGGTGTGGCCAGGACATCCCGTGTGCGCTGTTGAAGAGCCGACCCACATGTACGGCTACAAGTGGACCAGTGGGTGAAAGCGGAGACGACACAATCCATCGGACAAGGGCGATCGGATGGAAAGCAGTTGGACTGATGTGTGCTCCAGCCTTCAGCATGGACACACCACACTGAGCGAGTCTGGAGGCCGAGCGAACCACAGTCACTGGCCACACACACACCCCATACACctgaggaaaacacacacagagacagagagagatgtGAGGAGATGTGTTAAACTGCACTGAATATTTGAGGCAAAATTAAAAGTATTCGCCCTCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008831 False 747 lncRNA 0.55 2 33676834 33685911
TCONS_00008832 True 504 lncRNA 0.55 3 33676834 33688949

Neighbor

gene id symbol gene type direction distance location
XLOC_004228 lims1 coding downstream 58222 33598213 ~ 33618612 (-)
XLOC_004227 NA coding downstream 275358 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 coding downstream 478230 33190658 ~ 33198604 (-)
XLOC_004225 NA coding downstream 497039 33163180 ~ 33179795 (-)
XLOC_004224 NA coding downstream 612281 32977282 ~ 33064553 (-)
XLOC_004230 nxph2b coding upstream 157491 33846440 ~ 33857911 (-)
XLOC_004231 si:ch211-227n13.3 coding upstream 172228 33861177 ~ 33868908 (-)
XLOC_004232 phka2 coding upstream 181408 33870357 ~ 33919309 (-)
XLOC_004233 col6a2 coding upstream 232409 33921358 ~ 33960318 (-)
XLOC_004234 CR925698.1 coding upstream 277209 33966158 ~ 33966272 (-)
XLOC_004063 CR854846.1 misc downstream 17549156 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 20985143 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21055067 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21085538 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21163572 12512966 ~ 12513262 (-)
XLOC_004223 NA non-coding downstream 744207 32930519 ~ 32932627 (-)
XLOC_004235 NA non-coding upstream 303084 33992033 ~ 33993147 (-)
XLOC_004243 FO681390.1 non-coding upstream 560507 34249456 ~ 34255220 (-)
XLOC_004244 NA non-coding upstream 626576 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 non-coding upstream 666595 34355544 ~ 34355662 (-)
XLOC_004222 NA non-coding downstream 733962 32809971 ~ 32942872 (-)

Expression


Co-expression Network