LOC118947124 (b9d1)


Basic Information

Item Value
gene id LOC118947124
gene name b9d1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 40792 ~ 46887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972333.1
cttgtgcatgtgacaataacCCATTAAAACTTGTCCAAGACTACCACCTAGTGGACAGTTTACTTACTAAAAACGCTTTATCAACTTGACCGGATCCAGTTTGGCCCTCACTGACTAGCCGTAGTCAAAAGCGTCCTAGCAACGGGGCGGATAGGAACCTTCATTTAACAACAAGCTACTTATCTcccacaacacaaaacaacaatacGTTACCGCTTATACAGTCTTAAATTATAATATTTGTGTTTGTTTAAAAACAATCTATATTCTCAAGTTATCGTATGAAGCGGGATGGCTATCAACAACCCATCGGTGTTTCTGTTGATGATAAACGGACAGATAGAAGGGGCGAATtTTCCAGAGTATGATGACCTGTACTGTAAATACTGCTTCGTCTACGGACACGACTGGGCTCCCACCTCGggTCTAGAGGAGGGTATATCTCAGATTACGTCGAAAGGCAGAGACTCTCCTCAGAGAATGATCTGGAATTTTCCTCTGGAGATCACCTTTAAGAGCACCAACCCATTAGgctGGCCTCAGATCGTGGTAAGTGTCTACGGTCCTGATACGTTTGGTAACGATGTGGTCAGAGGATACGGAGCAACACACATCCCCTTCACTCCTGGACaACACACCAGAACCATCCCAATGTTTGTTCCTGAATCCACATCAAGACTACAGAAATTCACAAGttGGCTGCTGGGGCGGCGTCCAGAGTTCACCGATCCTAAAGTCGTGGCCCAGGGAGAGGGCAGAGAAGTGACCAGGGTCCGTTCTCAGGGTTtcgtctccctctccttccacatTGTGACTAAAGACATGAAGAGACTGGGTTACGACACCACACCTTCCGAGAcctcacacactctgtcacacactgcTGCAGCAGGCatcggaCCGGGAGACCAGCCCTACAGCACGtgatggaaacacacacagggaCCAAAGACAACACCATCTCCCTCCCTGACCCCTGTGTGTGGTCCCATCAGTAGCAGCTGGATACTGTAGGTGTTAGtgatgtctggtctctctcctcgagGAACAGGAGAGCTTCTACCCGCCCACTTCCATTCAGACTGATCTAGGACCTGCTGATCCACTGATCCCTCTATAATAAGGCTGGTTTAAAGACATCTGACTGATCCAGGACCTGCCGATCCCCTCTATAGTAAGGCTGGTTTAAACAATGCCTTTTAAATGTCTCTTTTTTTTAAAGCCGCATTGTGTACAACCTTCAAATGTATTGAATCCCCAGCCTCCCCGTTTATAACCAGGTGTTCGTAAGTCATCGTGTTCGGTCtgaggatctgtctctctctctcagggaagTCAAGTTACTGTGTTACTAAAAAAAAAAGGGTCCCGATTCAAATCAGTTCCTCTTTACGTTTTGACAGCGTCGGAGGTGGAAGTGGGTTAACGATAGTAGGACGGGGCGTGGCTTCCTGACAACGATCACCGATTGGACAGCCACCCAACctccaaaaaaataaaataaacatcggCTTATGCCGGTTATCGCTTGATCTGCATTGTAATTTTTTGACTGATAATAAAATGTGTTTCATGAACAAGG
>TU2676833
GGGCGGATAGGAACCTTCATTTAACAACAAGCTACTTATCTcccacaacacaaaacaacaatacGTTACCGCTTATACAGTCTTAAATTATAATATTTGTGTTTGTTTAAAAACAATCTATATTCTCAAGTTATCGTATGAAGCGGGATGGCTATCAACAACCCATCGGTGTTTCTGTTGATGATAAACGGACAGATAGAAGGGGCGAATtTTCCAGAGTATGATGACCTGTACTGTAAATACTGCTTCGTCTACGGACACGACTGGGCTCCCACCTCGggTCTAGAGGAGGGTATATCTCAGATTACGTCGAAAGGCAGAGACTCTCCTCAGAGAATGATCTGGAATTTTCCTCTGGAGATCACCTTTAAGAGCACCAACCCATTAGgctgtgagacacacacacacacagacccttcTTACCATAGCAGACAGTTGATGATACCATAGCTAACACTGTGTTGTGTACCCAGGGCCTCAGATCGTGGTAAGTGTCTACGGTCCTGATACGTTTGGTAACGATGTGGTCAGAGGATACGGAGCAACACACATCCCCTTCACTCCTGGACaACACACCAGAACCATCCCAATGTTTGTTCCTGAATCCACATCAAGACTACAGAAATTCACAAGttGGCTGCTGGGGCGGCGTCCAGAGTTCACCGATCCTAAAGTCGTGGCCCAGGGAGAGGGCAGAGAAGTGACCAGGGTCCGTTCTCAGGGTTtcgtctccctctccttccacatTGTGACTAAAGACATGAAGAGACTGGGTTACGACACCACACCTTCCGAGAcctcacacactctgtcacacactgcTGCAGCAGGCatcggaCCGGGAGACCAGCCCTACAGCACGtgatggaaacacacacagggaCCAAAGACAACACCATCTCCCTCCCTGACCCCTGTGTGTGGTCCCATCAGTAGCAGCTGGATACTGTAGGTGTTAGtgatgtctggtctctctcctcgagGAACAGGAGAGCTTCTACCCGCCCACTTCCATTCAGACTGATCTAGGACCTGCTGATCCACTGATCCCTCTATAATAAGGCTGGTTTAAAGACATCTGACTGATCCAGGACCTGCCGATCCCCTCTATAGTAAGGCTGGTTTAAACAATGCCTTTTAAATGTCTCTTTTTTTTAAAGCCGCATTGTGTACAACCTTCAAATGTATTGAATCCCCAGCCTCCCCGTTTATAACCAGGTGTTCGTAAGTCATCGTGTTCGGTCtgaggatctgtctctctctctcagggaagTCAAGTTACTGTGTTACTAAAAAAAAAAGGGTCCCGATTCAAATCAGTTCCTCTTTACGTTTTGACAGCGTCGGAGGTGGAAGTGGGTTAACGATAGTAGGACGGGGCGTGGCTTCCTGACAACGATCACCGATTGGACAGCCACCCAACctccaaaaaaataaaataaacatcggCTTATGCCGGTTATCGCTTGATCTGCATTGTAATTTTTTGACTGATAATAAAA
>TU2676835
GGGCGGATAGGAACCTTCATTTAACAACAAGCTACTTATCTcccacaacacaaaacaacaatacGTTACCGCTTATACAGTCTTAAATTATAATATTTGTGTTTGTTTAAAAACAATCTATATTCTCAAGTTATCGTATGAAGCGGGATGGCTATCAACAACCCATCGGTGTTTCTGTTGATGATAAACGGACAGATAGAAGGGGCGAATtTTCCAGAGTATGATGACCTGTACTGTAAATACTGCTTCGTCTACGGACACGACTGGGCTCCCACCTCGggTCTAGAGGAGGGTATATCTCAGATTACGTCGAAAGGCAGAGACTCTCCTCAGAGAATGATCTGGAATTTTCCTCTGGAGATCACCTTTAAGAGCACCAACCCATTAGgctGGCCTCAGATCGTGGTAAGTGTCTACGGTCCTGATACGTTTGGTAACGATGTGGTCAGAGGATACGGAGCAACACACATCCCCTTCACTCCTGGACagtcagtatctctcctcctcctctctcctggacagtcagtatctgtcctcctcctcttcctctctcctcttcctctctcctggacagtcagtatctgt
>TU2676834
ctcctcctcttcctctcccctggacagtcagtatctctcctcctcttcctctcccctggacagtcagtatctctcctcctcttcctctcccctggacagtcagtatctctcctcctcttcctctcccctggacagtcagtatctctcttcctcttcctctcccctggacagtcagtatctctcctcctcttcctctctcctggacagtcagtatctctcctcctcttcctctctcctggaagtccatatctctcctcctcttcctctctcctggacagtccgtatctctcctcctcttcctctctcctggacagTCAGTATCTCTCCTAATGTAATCTCTTGTTTTCAGACACACCAGAACCATCCCAATGTTTGTTCCTGAATCCACATCAAGACTACAGAAATTCACAAGttGGCTGCTGGGGCGGCGTCCAGAGTTCACCGATCCTAAAGTCGTGGCCCAGGGAGAGGGCAGAGAAGTGACCAGGGTCCGTTCTCAGGGTTtcgtctccctctccttccacatTGTGACTAAAGACATGAAGAGACTGGGTTACGACACCACACCTTCCGAGAcctcacacactctgtcacacactgcTGCAGCAGGCATCGGACCGGGAGACCAGCCCTACAGCACGtgacggaaacacacacacacaatcggaCCGGGAGACCAGCCCTACAGCACGtgatggaaacacacacagggaCCAAAGACAACACCATCTCCCTCCCTGACCCCTGTGTGTGGTCCCATCAGTAGCAGCTGGATACTGTAGGTGTTAGtgatgtctggtctctctcctcgagGAACAGGAGAGCTTCTACCCGCCCACTTCCATTCAGACTGATCTAGGACCTGCTGATCCACTGATCCCTCTATAATAAGGCTGGTTTAAAGACATCTGACTGATCCAGGACCTGCCGATCCCCTCTATACGTCGGAGGTGGAAGTGGGTTAACGATAGTAGGACGGGGCGTGGCTTCCTGACAACGATCACCGATTGGACAGCCACCCAACctccaaaaaaataaaataaacatcggCTTATGCCGGTTATCGCTTGATCTGCATTGTAATTTTTTGACTGATAATAAAA

Function

symbol description
b9d1 Predicted to enable hedgehog receptor activity. Predicted to be involved in cilium assembly and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in centrosome; ciliary basal body; and ciliary transition zone. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 27 and Meckel syndrome. Orthologous to human B9D1 (B9 domain containing 1).

NR:

description
PREDICTED: B9 domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972333.1 False 1582 mRNA 0.47 8 40792 46887
TU2676833 False 1502 lncRNA 0.47 7 40936 46869
TU2676835 False 585 TUCP 0.46 4 40936 42811
TU2676834 True 1103 TUCP 0.52 4 43393 46869

Neighbor

gene id symbol gene type direction distance location
grapa LOC106602037 coding downstream 99146 146033 ~ 184015 (+)
LOC118947116 fam83g coding downstream 154860 201747 ~ 219513 (+)
LOC110516853 LOC106579185 coding downstream 254888 301775 ~ 437126 (+)
LOC118947125 NA coding downstream 483098 465511 ~ 562271 (+)
LOC118947126 rpusd1 coding downstream 632566 679453 ~ 693043 (+)
G2338421 NA non-coding upstream 6796 21768 ~ 33996 (+)
G2338434 NA non-coding downstream 549 47436 ~ 51919 (+)
G2338465 NA non-coding downstream 90264 137151 ~ 138209 (+)
G2338466 NA non-coding downstream 91456 138343 ~ 138553 (+)
G2338468 NA non-coding downstream 106196 153083 ~ 153765 (+)
G2338469 NA non-coding downstream 117013 163900 ~ 164225 (+)
G2338488 NA other downstream 158295 205182 ~ 206228 (+)
LOC110511299 LOC106591863 other downstream 667693 703483 ~ 758282 (+)

Expression


Co-expression Network