LOC118947126 (rpusd1)


Basic Information

Item Value
gene id LOC118947126
gene name rpusd1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 679453 ~ 693043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972339.1
TATGACGTTGTCACAGCTTCCGTGTTTTTGGTTTGTTTCTGGTCTCTGTAATGTACATGTGGGTCTACTGGAGAGATTTAATAATACACAGCAGGTCAGGCTGAGCTGAGTGGTGAGTATGGAACCTGCCGTTGTGGAACCGGGAAGTATGGAACCTGCCGGTGTGGAACCGGGAAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGCCGGTGTGGAACCGGGAAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCGGTGTGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCGGTGTGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCGGTGTGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCAGTGTGGACAGTCTGAGGGAACCGACCAGTGTGCAACCAGACAGCGGTATGGAACCTGGCAGTGTGGAACCGGCCAGTGGTGTGGAAACGACCAGGGGTGTGGAACCGTCCAGAGGTGTGGAACCCGCCAGTGTTGACAGTCTGAAggttctgtatcagagctgtgACTACATCATAGTGGATAAGCACTGGGACATCCGCATCGACAGCAAGATGTGGTACGAGAAACACACTGTCCAGAAACAGCTGGGACTCCGCTTCCCTGAGCTGGCCGACCCTGGGACGTACTATGGATTCAGgttcTGTCACCAACTGGACTACTCCACCAGTGGGGTTCTGTGTGTGGCTCTGAACAAGGCTGCTGCTGGCCGGGTCTACCACTGTTTTAAAGACCGCAGAGCTACCAAGGTTTACCTAGCACTggtgagaggctgggtagaggaggagaagatgactATAGACTTCTCCATCGGTGAAAACACCACAGAGGGAAGAACACACATGATGTGTATCCAAGGAACAGACGGTTGTGAGAACCCCAAGCCCTGTCAGTCTCATCTCACCGTGTTGGAGTACGGAGATTATGATGGAGACCCTGTTACCAAGGTGGTGCTGCAGCCtctcacagGTCGTACCCACCAGCTGAGGGTTCACTGTGAGGCGGTAGGGCACCCCATCGTAGGAGACTACACCTACAGCCTGGGAGAGGACAGCGCCCCCTATCGCATGATGCTGCACGCACACCTCCTACACCTCCCCCTGGAGCCACTCCCCCTGCAGGCCGCTGCCCCCGACCCCTTCACCACGCCCACTGACCCTCGCTGGCGCCCGCAGCGCTGCCTCCGGACTGTAGAGGGAGTCGTGGAGACCCTGCTGGAGCACAGGGCGGcggaggagaggacagagcgggaggagaagaagagacagcaggaggagaggagcaggcagcaggaggagaggaggaagaggtggagggggagagaggagagtgaggagcagaggaggatGTGTCAGCAGTGGTTGTCTGAGTGGACTGATGTCTgaattctccttctcctctcttcatcccccttctccttctcctctctccatccccctgctccttctcctctcttcatcctccatcccttctcctctcttcatcctcatcccttcgcctctctt
>XM_036972340.1
TTTTGGTTTGTTTCTGGTCTCTGTAATGTACATGTGGGTCTACTGGAGAGATTTAATAATACACAGGTCAGGCTGAGCTGAGTGGTGAGTATGGAACCTGCCGTTGTGGAACCGGGAAGTATGGAACCTGCCGGTGTGGAACCGGGAAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGCCGGTGTGGAACCGGGAAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCGGTGTGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCGGTGTGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCGGTGTGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTAGCAGTATGGAACCTGGCAGTGTGGACAGTCTGAGGGAACCGACCAGTGTGCAACCAGACAGCGGTATGGAACCTGGCAGTGTGGAACCGGCCAGTGGTGTGGAAACGACCAGGGGTGTGGAACCGTCCAGAGGTGTGGAACCCGCCAGTGTTGACAGTCTGAAggttctgtatcagagctgtgACTACATCATAGTGGATAAGCACTGGGACATCCGCATCGACAGCAAGATGTGGTACGAGAAACACACTGTCCAGAAACAGCTGGGACTCCGCTTCCCTGAGCTGGCCGACCCTGGGACGTACTATGGATTCAGgttcTGTCACCAACTGGACTACTCCACCAGTGGGGTTCTGTGTGTGGCTCTGAACAAGGCTGCTGCTGGCCGGGTCTACCACTGTTTTAAAGACCGCAGAGCTACCAAGGTTTACCTAGCACTggtgagaggctgggtagaggaggagaagatgactATAGACTTCTCCATCGGTGAAAACACCACAGAGGGAAGAACACACATGATGTGTATCCAAGGAACAGACGGTTGTGAGAACCCCAAGCCCTGTCAGTCTCATCTCACCGTGTTGGAGTACGGAGATTATGATGGAGACCCTGTTACCAAGGTGGTGCTGCAGCCtctcacagGTCGTACCCACCAGCTGAGGGTTCACTGTGAGGCGGTAGGGCACCCCATCGTAGGAGACTACACCTACAGCCTGGGAGAGGACAGCGCCCCCTATCGCATGATGCTGCACGCACACCTCCTACACCTCCCCCTGGAGCCACTCCCCCTGCAGGCCGCTGCCCCCGACCCCTTCACCACGCCCACTGACCCTCGCTGGCGCCCGCAGCGCTGCCTCCGGACTGTAGAGGGAGTCGTGGAGACCCTGCTGGAGCACAGGGCGGcggaggagaggacagagcgggaggagaagaagagacagcaggaggagaggagcaggcagcaggaggagaggaggaagaggtggagggggagagaggagagtgaggagcagaggaggatGTGTCAGCAGTGGTTGTCTGAGTGGACTGATGTCTgaattctccttctcctctcttcatcccccttctccttctcctctctccatccccctgctccttctcctctcttcatcctccatcccttctcctctcttcatcctcatcccttcgcctctctt
>TU2677337
CAGCTTCCGTGTTTTTGGTTTGTTTCTGGTCTCTGTAATGTACATGTGGGTCTACTGGAGAGATTTAATAATACACAGgttcTGTCACCAACTGGACTACTCCACCAGTGGGGTTCTGTGTGTGGCTCTGAACAAGGCTGCTGCTGGCCGGGTCTACCACTGTTTTAAAGACCGCAGAGCTACCAAGGTTTACCTAGCACTggtgagaggctgggtagaggaggagaagatgactATAGACTTCTCCATCGGTGAAAACACCACAGAGGGAAGAACACACATGATGTGTATCCAAGGAACAGACGGTTGTGAGAACCCCAAGCCCTGTCAGTCTCATCTCACCGTGTTGGAGTACGGAGATTATGATGGAGACCCTGTTACCAAGGTGGTGCTGCAGCCtctcacagGTCGTACCCACCAGCTGAGGGTTCACTGTGAGGCGGTAGGGCACCCCATCGTAGGAGACTACACCTACAGCCTGGGAGAGGACAGCGCCCCCTATCGCATGATGCTGCACGCACACCTCCTACACCTCC
>TU2677333
GGTATGGAACCTGGCAGTGTGGAACCGGCCAGTGGTGTGGAAACGACCAGGGGTGTGGAACCGTCCAGAGGTGTGGAACCCGCCAGTGTTGACAGTCTGAAggttctgtatcagagctgtgACTACATCATAGTGGATAAGCACTGGGACATCCGCATCGACAGCAAGATGTGGTACGAGAAACACACTGTCCAGAAACAGCTGGGACTCCGCTTCCCTGAGCTGGCCGACCCTGGGACGTACTATGGATTCAGgttcTGTCACCAACTGGACTACTCCACCAGTGGGGTTCTGTGTGTGGCTCTGAACAAGGCTGCTGCTGGCCGGGTCTACCACTGTTTTAAAGACCGCAGAGCTACCAAGGTTTACCTAGCACTggtgagaggctgggtagaggaggagaagatgactATAGACTTCTCCATCGGTGAAAACACCACAGAGGGAAGAACACACATGATGTGTATCCAAGGAACAGACGGTTGTGAGAACCCCAAGCCCTGTCAGTCTCATCTCACCGTGTTGGAGTACGGAGATTATGATGGAGACCCTGTTACCAAGGTGGTGCTGCAGCCtctcacagGTCGTACCCACCAGCTGAGGGTTCACTGTGAGGCGGTAGGGCACCCCATCGTAGGAGACTACACCTACAGCCTGGGAGAGGACAGCGCCCCCTATCGCATGATGCTGCACGCACACCTCCTACACCTCC
>TU2677336
ctctctgtcaggttcTGTCACCAACTGGACTACTCCACCAGTGGGGTTCTGTGTGTGGCTCTGAACAAGGCTGCTGCTGGCCGGGTCTACCACTGTTTTAAAGACCGCAGAGCTACCAAGGTTTACCTAGCACTggtgagaggctgggtagaggaggagaagatgactATAGACTTCTCCATCGGTGAAAACACCACAGAGGGAAGAACACACATGATGTGTATCCAAGGAACAGACGGTTGTGAGAACCCCAAGCCCTGTCAGTCTCATCTCACCGTGTTGGAGTACGGAGATTATGATGGAGACCCTGTTACCAAGGTGGTGCTGCAGCCtctcacagGTCGTACCCACCAGCTGAGGGTTCACTGTGAGGCGGTAGGGCACCCCATCGTAGGAGACTACACCTACAGCCTGGGAGAGGACAGCGCCCCCTATCGCATGATGCTGCACGCACACCTCCTACACCTCC

Function

symbol description
rpusd1 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD1 (RNA pseudouridine synthase domain containing 1).

NR:

description
PREDICTED: RNA pseudouridylate synthase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972339.1 False 1804 mRNA 0.55 6 679453 693043
XM_036972340.1 False 1776 mRNA 0.55 6 679478 693043
TU2677337 False 536 TUCP 0.53 5 679466 692636
TU2677333 False 712 TUCP 0.55 5 681408 692636
TU2677336 True 469 TUCP 0.55 4 684179 692636
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118947125 NA coding upstream 131025 465511 ~ 562271 (+)
LOC110516853 LOC106579185 coding upstream 242327 301775 ~ 437126 (+)
LOC118947116 fam83g coding upstream 459940 201747 ~ 219513 (+)
grapa LOC106602037 coding upstream 495438 146033 ~ 184015 (+)
LOC118947124 b9d1 coding upstream 632566 40792 ~ 46887 (+)
LOC110511299 LOC106591863 coding downstream 10440 703483 ~ 758282 (+)
LOC110517977 LOC102799139 coding downstream 146103 839146 ~ 843678 (+)
LOC110517915 atp5j2 coding downstream 328783 1021826 ~ 1024705 (+)
LOC118947121 NA coding downstream 333318 1026356 ~ 1028105 (+)
LOC110518375 LOC106595689 coding downstream 359149 1052192 ~ 1074031 (+)
G2338763 NA non-coding upstream 1272 677724 ~ 678181 (+)
G2338761 NA non-coding upstream 2896 676325 ~ 676557 (+)
G2338755 NA non-coding upstream 10348 668860 ~ 669105 (+)
G2338743 NA non-coding upstream 67484 611466 ~ 611969 (+)
G2338741 NA non-coding upstream 69984 609097 ~ 609469 (+)
G2338772 NA non-coding downstream 13506 706549 ~ 706890 (+)
G2338773 NA non-coding downstream 13947 706990 ~ 707310 (+)
G2338774 NA non-coding downstream 15408 708451 ~ 708714 (+)
G2338775 NA non-coding downstream 16748 709791 ~ 710034 (+)
G2338777 NA non-coding downstream 29362 722405 ~ 723638 (+)
G2338488 NA other upstream 473225 205182 ~ 206228 (+)
G2338845 NA other downstream 235319 928362 ~ 929635 (+)

Expression

LOC118947126(rpusd1) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
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LOC118947126(rpusd1) Expression in each Bioproject

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LOC118947126(rpusd1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network