LOC110511299 (LOC106591863)


Basic Information

Item Value
gene id LOC110511299
gene name LOC106591863
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 703483 ~ 758282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972307.1
AGGTTGTTTTCGATTTCCGGTTATGTTCGTTTGTTAGCCAAatatttgaatgtttttttgttgttgtttgggaCATTCAATAACATCCGAGTTATGAGATTGAACGACCTATATATAGCGTTTTGTTAATTATTACATAGCCAGCTTATTAGATATATAACTGGTTAATAAGTAGGTCATTCGAAGTATAAACGGGTAGCGATTATTGGTCTGTCGTTAAGCTAGCTAGGCTAGCTAGGTTAGCCCAAACAGATACCGAACTGAACAGAAAGTGCAAGCAAACATGAGAAATCACAGCCAACTCCGCCAGTGAACACTCAGggggatgGTGTCGAGTGTTgttggtcagtgtgtgtctgtgagcagcGTGTCACCCAGGCAGTGTGATTGACTATGGCGGACAGACCTGACGACGATGACGTTATCGTCCTGGCCAGCTTCAACATCCACCGCAGCCAAGgtcgtCGGGCACGCAGGAGGAACTTCATCACCATATCAGATGACTCTGACGAGGAGCCGGTTCCTCTGGACCCCAACAGTCCTGTCCTGGTTTCTGACAAAcctgacgatgatgatgatgtcagcaTACTAGAGtccctgAATCCTGCCCGGCGACGTGTGATTCGTCCAGCAGCACTTTGGGGTGTGGCCTCTGAAGGCGATGGACCAATCATAGAGCTAAAAGAGGTTGACGGTCATCGGACTGCACCCCTTCCACCCACCTCACAGTGCAGAGAAACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACTTCACAGTACAGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACTTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACTTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACCGAAACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACGGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACGGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACCGAAACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACTTCACAGTACAGAGACGGAGACACCTCCGCCCCATCCACCTCAACCCAGACCAGACATCAACCCTTCACCAGGCCTGTCCTGCAGGAGGTCAAGTTAGTTTTGCTCCCTCAGGTTCAGCCCCCTGCACCCCCTCAGCCCCATGCCCGGCCCCGATCCCCCCTACAGCAGCTCCACCCTGGACCCCTCAACCAGCCTCGGCCCCCCCTGCCCCCCCAGGCTCTCCTCCTAACCCATGCCTTCCAGATCCAACAACCCAGATCCCTTCATCCCCAACCTGTTCCCCAGGTCGCCCCCCAGCGGTGTCCTGCGGGCCCCTGTGGCGTCCCTGCCCCCGCCGTGCTGATAGCTGCTGCCCCCGAGCGTCTGGGCCCCCCAGAGACCGGCCATCGCATCACCCTGGGCAGCCAGACTCTTGGGGGCCTTAACCCCCAGTCCGGAGCCCCGCTGCTGACACACGACCGCCCTCTGTCCCTGGGGCCACAGGTGGTAGTTGTGGTCAACCGGCCAGACACTCAACCTCCCCTCCCCATCCCAGCTCTCGCTGTTCCCCTGAACCCTAACCCCATAGTCCCAGTCCCTGTCGTCCCAGTTGTCCCCAGGACAGCGGAGGAGAGGGCAGGTCCCTCAGACCAACAGGAAGTCCGGGGACCAGAGACACCTCAGCTGCAGCCCCACGTCAGAGCACTGGTCAGAGGAGTGgtggATCTGTTTCCTGATGTCCAGGAGAACTATGTAGCAGAACTGATCCAGACCAATGACCTGAAAGACCTCAATGTTATCTGTAACATGTTGCTGGAGAACCCAGCCTTCCCTCAGAGAGAGAGTTCAGCCTCCGCGGCTCAGAGCAGCATGCTACTGGAACCCTGCAACGACAACTCACAGtctgcaGAGGACCTGTTTGACTACGGGTCGTTAGGTCAGGTGGGTGCTGAGGCGGCGATGCAGGCAGCTGACCTCTTGATGGGAGACTTCAGGATGATTTCCTGTCAGGACATCAAATGGAGCCTCAACGCCATGAAGGGGCACTACGCAATCACACGCAAGgccTTATGTGAAGCAGTGAAGCAGTTTCAAGACTCTGAGTCGTTAGAGAAGAGACGACGCAGGAGACAGACTGCAGAACGCTGCTATATAGACTTCAAGTATCAGCATGgtTCGGTGAAGTTGGAGAGGAGGATGTACTTCCTGGAGAAGAACCGGCGCGGCTGCAGGACGTACGGAGCGGCTCTGGACCCCTCGCTGCAGAGGGAGATCACCTTCTATCAGCAGAAAGCCAAGGagcatgctgagCATGAAGACTTCCTGCTGGCTCTGCAGGTTAATGAGGAGGAGTATGAGAAGgacggacagctgatagAGTGTGGGTGTTGCTGTGGGGACTTTGCCTTCGAGAAGATGACCCAGTGTTCTGATGGACATCTCTTCTGTAAAGAATGTCTGGTTAAATATGCCGAGGAAGCCGTGTTCGGGTCGGGACAGtcCTCTCTCAGCTGTATGGAAGCAGGCTGTCCCTGTTCCTTCCCGGTGTGCGAGTTGGAAAAGGTGTTGCCGGACACGGTGTTGTGTAAATACTACGAGAGACAGGCTGAAGAGGCCGTGGCCGCGACCTGCGCCGACGAACTAGTACGTTGTCCGTCCTGTAACTTCCCAGCGTTGTTGGATAAAGGTGTGTCGCTGTTCAGCTGTCCCAACCCTCGCTGTCGGAAGgaGAGCTGCAGGAAGTGCCGTGTCCAGTGGAAGGAGCATGCTGGGAAGTCATGTGACCAGGTCATGGAACGAGATGAGATACGCATGAGGGTGGCCTTTGAGGAGCGGATGACAGCAGCTCGGGTCAGGAAGTGTGGAACAGGTCTGGTGTTGGGCGCTTACTAGGGTCCTAACTAGGGTCCTAACTAGGGTCCTAACTAGGGTGC
>XM_036972306.1
TGTTTTCGATTTCCGGTTATGTTCGTTTGTTAGCCAAatatttgaatgtttttttgttgttgtttgggaCATTCAATAACATCCGAGTTATGAGATTGAACGACCTATATATAGCGTTTTGTTAATTATTACATAGCCAGCTTATTAGATATATAACTGGTTAATAAGTAGGTCATTCGAAGTATAAACGGGTAGCGATTATTGGTCTGTCGTTAAGCTAGCTAGGCTAGCTAGGTTAGCCCAAACAGATACCGAACTGAACAGAAAGTGCAAGCAAACATGAGAAATCACAGCCAACTCCGCCAGTGAACACTCAGggggatgGTGTCGAGTGTTgttggtcagtgtgtgtctgtgagcagcGTGTCACCCAGGCAGTGTGATTGACTATGGCGGACAGACCTGACGACGATGACGTTATCGTCCTGGCCAGCTTCAACATCCACCGCAGCCAAGgtcgtCGGGCACGCAGGAGGAACTTCATCACCATATCAGATGACTCTGACGAGGAGCCGGTTCCTCTGGACCCCAACAGTCCTGTCCTGGTTTCTGACAAAcctgacgatgatgatgatgtcagcaTACTAGAGtccctgAATCCTGCCCGGCGACGTGTGATTCGTCCAGCAGCACTTTGGGGTGTGGCCTCTGAAGGCGATGGACCAATCATAGAGCTAAAAGAGGTTGACGGTCATCGGACTGCACCCCTTCCACCCACCTCACAGTGCAGAGAAACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACTTCACAGTACAGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACTTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACTTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACCGAAACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACGGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACGGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACCGAAACGCCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACCGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACCTCACAGTACAGAGACACCTCCGCCCCATCCACTTCACAGTACAGAGACGGAGACACCTCCGCCCCATCCACCTCAACCCAGACCAGACATCAACCCTTCACCAGGCCTGTCCTGCAGGAGGTCAAGTTAGTTTTGCTCCCTCAGGTTCAGCCCCCTGCACCCCCTCAGCCCCATGCCCGGCCCCGATCCCCCCTACAGCAGCTCCACCCTGGACCCCTCAACCAGCCTCGGCCCCCCCTGCCCCCCCAGGCTCTCCTCCTAACCCATGCCTTCCAGATCCAACAACCCAGATCCCTTCATCCCCAACCTGTTCCCCAGGTCGCCCCCCAGCGGTGTCCTGCGGGCCCCTGTGGCGTCCCTGCCCCCGCCGTGCTGATAGCTGCTGCCCCCGAGCGTCTGGGCCCCCCAGAGACCGGCCATCGCATCACCCTGGGCAGCCAGACTCTTGGGGGCCTTAACCCCCAGTCCGGAGCCCCGCTGCTGACACACGACCGCCCTCTGTCCCTGGGGCCACAGGTGGTAGTTGTGGTCAACCGGCCAGACACTCAACCTCCCCTCCCCATCCCAGCTCTCGCTGTTCCCCTGAACCCTAACCCCATAGTCCCAGTCCCTGTCGTCCCAGTTGTCCCCAGGACAGCGGAGGAGAGGGCAGGTCCCTCAGACCAACAGGAAGTCCGGGGACCAGAGACACCTCAGCTGCAGCCCCACGTCAGAGCACTGGTCAGAGGAGTGgtggATCTGTTTCCTGATGTCCAGGAGAACTATGTAGCAGAACTGATCCAGACCAATGACCTGAAAGACCTCAATGTTATCTGTAACATGTTGCTGGAGAACCCAGCCTTCCCTCAGAGAGAGAGTTCAGCCTCCGCGGCTCAGAGCAGCATGCTACTGGAACCCTGCAACGACAACTCACAGtctgcaGAGGACCTGTTTGACTACGGGTCGTTAGGTCAGGTGGGTGCTGAGGCGGCGATGCAGGCAGCTGACCTCTTGATGGGAGACTTCAGGATGATTTCCTGTCAGGACATCAAATGGAGCCTCAACGCCATGAAGGGGCACTACGCAATCACACGCAAGgccTTATGTGAAGCAGTGAAGCAGTTTCAAGACTCTGAGTCGTTAGAGAAGAGACGACGCAGGAGACAGACTGCAGAACGCTGCTATATAGACTTCAAGTATCAGCATGgtTCGGTGAAGTTGGAGAGGAGGATGTACTTCCTGGAGAAGAACCGGCGCGGCTGCAGGACGTACGGAGCGGCTCTGGACCCCTCGCTGCAGAGGGAGATCACCTTCTATCAGCAGAAAGCCAAGGagcatgctgagCATGAAGACTTCCTGCTGGCTCTGCAGGTTAATGAGGAGGAGTATGAGAAGgacggacagctgatagAGTGTGGGTGTTGCTGTGGGGACTTTGCCTTCGAGAAGATGACCCAGTGTTCTGATGGACATCTCTTCTGTAAAGAATGTCTGGTTAAATATGCCGAGGAAGCCGTGTTCGGGTCGGGACAGtcCTCTCTCAGCTGTATGGAAGCAGGCTGTCCCTGTTCCTTCCCGGTGTGCGAGTTGGAAAAGGTGTTGCCGGACACGGTGTTGTGTAAATACTACGAGAGACAGGCTGAAGAGGCCGTGGCCGCGACCTGCGCCGACGAACTAGTACGTTGTCCGTCCTGTAACTTCCCAGCGTTGTTGGATAAAGGTGTGTCGCTGTTCAGCTGTCCCAACCCTCGCTGTCGGAAGgaGAGCTGCAGGAAGTGCCGTGTCCAGTGGAAGGAGCATGCTGGGAAGTCATGTGACCAGGTCATGGAACGAGATGAGATACGCATGAGGGTGGCCTTTGAGGAGCGGATGACAGCAGCTCGGGTCAGGAAGTGCGTGAAGTGTGGAACAGGTCTGGTGAAGTCTGAGGGATGTAACAGGATGTGGTGTCGTTGTGGAAGCTACATGTGCTACCTGTGCCGAGAGCCAATCAGTGGATACAACCACTTCTGTCAGCACGCCCGTTCCCCTGGCGCTCCCTGTAGGCACTGCCGCAAGTGCTCTCTCTGGACAGACCCcacgCAAGATGACGAGCGCATCATTCAGGAGATTCAGAAAGAGGGCGAGAAAGAGCTCAACAAGAAGAACGCAGagACTTCAGGGAAGAGAGTGGGCCCGCCCCCGGAACCTGTGGTGGTTGCTAAGCGACCTCGAGCAGCCCCCCCTCCGCAGGCGGTGCGAGCGCCCTTATTGGTCCCTCCTCGTGTCATTCTGCCTCATCGCCAGCCCTTGCCCCCCGCCCCCTACGTGCCCCCGCTCCTCCACCTGCCCCCCCTCAACTACCACCCTCCCCTCAACCAGGTCAACAACAACCTGAACAATATAGACGTCAACATGCCCATGCACTATGGACCCCCCCCTCgctactacagacacctataaccctcctcctcctctactacagacacctataaccctcctcctctactacagacacctataacccccctcctctactacagacacctat
>TU2677345
TTTGACTACGGGTCGTTAGGTCAGGTGGGTGCTGAGGCGGCGATGCAGGCAGCTGACCTCTTGATGGGAGACTTCAGGATGATTTCCTGTCAGGACATCAAATGGAGCCTCAACGCCATGAAGGGGCACTACGCAATCACACGCAAGgccTTATGTGAAGCAGTGAAGCAGTTTCAAGACTCTGAGTCGTTAGAGAAGAGACGACGCAGGAGACAGACTGCAGAACGCTGCTATATAGACTTCAAGTATCAGCATGgtTCGGTGAAGTTGGAGAGGAGGATGTACTTCCTGGAGAAGAACCGGCGCGGCTGCAGGACGTACGGAGCGGCTCTGGACCCCTCGCTGCAGAGGGAGATCACCTTCTATCAGCAGAAAGCCAAGGagcatgctgaggtacacacactctcactgaacacacacactcactctggaCCCCTCGCTGCAGAGGGAGATCAGCTTCTATCAGCAGAAAGCCAAGGagcatgctgaggtacacacactctcactgaacacacacactcactctcactgtacacacacactctcactgaacacacacactcactctcactgaacacacacactcactctggaCCCCTCGCTGCAGAGGGAGATCAGCTTCTATCAGCAGAAAGCCAAGGagcatgctgagCATGAAGACTTCCTGCTGGCTCTGCAGGTTAATGAGGAGGAGTATGAGAAGgacggacagctgatagAGTGTGGGTGTTGCTGTGGGGACTTTGCCTTCGAGAAGATGACCCAGTGTTCTGATGGACATCTCTTCTGTAAAGAATGTCTGGTTAAATATGCCGAGGAAGCCGTGTTCGGGTCGGGACAGtcCTCTCTCAGCTGTATGGAAGCAGGCTGTCCCTGTTCCTTCCCGGTGTGCGAGTTGGAAAAGGTGTTGCCGGACACGGTGTTGTGTAAATACTACGAGAGACAGGCTGAAGAGGCCGTGGCCGCGACCTGCGCCGACGAACTAGTACGTTGTCCGTCCTGTAACTTCCCAGCGTTGTTGGATAAAGGTGTGTCGCTGTTCAGCTGTCCCAACCCTCGCTGTCGGAAGgaGAGCTGCAGGAAGTGCCGTGTCCAGTGGAAGGAGCATGCTGGGAAGTCATGTGACCAGGTCATGGAACGAGATGAGATACGCATGAGGGTGGCCTTTGAGGAGCGGATGACAGCAGCTCGGGTCAGGAAGTGCGTGAAGTGTGGAACAGGTCTGGTGAAGTCTGAGGGATGTAACAGGATGTGGTGTCGTTGTGGAAGCTACATGTGCTACCTGTGCCGAGAGCCAATCAGTGGATACAACCACTTCTGTCAGCACGCCCGTTCCCCTGGCGCTCCCTGTAGGCACTGCCGCAAGTGCTCTCTCTGGACAGACCCcacgCAAGATGACGAGCGCATCATTCAGGAGATTCAGAAAGAGGGCGAGAAAGAGCTCAACAAGAAGAACGCAGagACTTCAGGGAAGAGAGTGGGCCCGCCCCCGGAACCTGTGGTGGTTGCTAAGCGACCTCGAGCAGCCCCCCCTCCGCAGGCGGTGCGAGCGCCCTTATTGGTCCCTCCTCGTGTCATTCTGCCTCATCGCCAGCCCTTGCCCCCCGCCCC
>TU2677344
CAGGCTGTTAACAgggtgtctctgtgttccagtcCTCTCTCAGCTGTATGGAAGCAGGCTGTTAACAgggtgtctctgtgttccagtcCTCTCTCAGCTGTATGGAAGCAGGCTGTCCCTGTTCCTTCCCGGTGTGCGAGTTGGAAAAGGTGTTGCCGGACACGGTGTTGTGTAAATACTACGAGAGACAGGCTGAAGAGGCCGTGGCCGCGACCTGCGCCGACGAACTAGTACGTTGTCCGTCCTGTAACTTCCCAGCGTTGTTGGATAAAGGTGTGTCGCTGTTCAGCTGTCCCAACCCTCGCTGTCGGAAGgaGAGCTGCAGGAAGTGCCGTGTCCAGTGGAAGGAGCATGCTGGGAAGTCATGTGACCAGGTCATGGAACGAGATGAGATACGCATGAGGGTGGCCTTTGAGGAGCGGATGACAGCAGCTCGGGTCAGGAAGTGCGTGAAGTGTGGAACAGGTCTGGTGAAGTCTGAGGGATGTAACAGGATGTGGTGTCGTTGTGGAAGCTACATGTGCTACCTGTGCCGAGAGCCAATCAGTGGATACAACCACTTCTGTCAGCACGCCCGTTCCCCTGGCGCTCCCTGTAGGCACTGCCGCAAGTGCTCTCTCTGGACAGACCCcacgCAAGATGACGAGCGCATCATTCAGGAGATTCAGAAAGAGGGCGAGAAAGAGCTCAACAAGAAGAACGCAGagACTTCAGGGAAGAGAGTGGGCCCGCCCCCGGAACCTGTGGTGGTTGCTAAGCGACCTCGAGCAGCCCCCCCTCCGCAGGCGGTGCGAGCGCCCTTATTGGTCCCTCCTCGTGTCATTCTGCCTCATCGCCAGCCCTTGCCCCCCGCCCC

Function

NR:

description
E3 ubiquitin-protein ligase RNF216

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972307.1 False 3374 mRNA 0.57 15 703483 754195
XM_036972306.1 False 3933 mRNA 0.57 17 703487 758282
TU2677345 False 1611 TUCP 0.55 11 714580 758055
TU2677344 True 856 TUCP 0.58 6 730229 758055

Neighbor

gene id symbol gene type direction distance location
LOC118947126 rpusd1 coding upstream 10440 679453 ~ 693043 (+)
LOC118947125 NA coding upstream 155055 465511 ~ 562271 (+)
LOC110516853 LOC106579185 coding upstream 266357 301775 ~ 437126 (+)
LOC118947116 fam83g coding upstream 483970 201747 ~ 219513 (+)
grapa LOC106602037 coding upstream 519468 146033 ~ 184015 (+)
LOC110517977 LOC102799139 coding downstream 80864 839146 ~ 843678 (+)
LOC110517915 atp5j2 coding downstream 263544 1021826 ~ 1024705 (+)
LOC118947121 NA coding downstream 268079 1026356 ~ 1028105 (+)
LOC110518375 LOC106595689 coding downstream 293910 1052192 ~ 1074031 (+)
LOC110514212 LOC106591425 coding downstream 320856 1079138 ~ 1147274 (+)
G2338763 NA non-coding upstream 25302 677724 ~ 678181 (+)
G2338761 NA non-coding upstream 26926 676325 ~ 676557 (+)
G2338755 NA non-coding upstream 34378 668860 ~ 669105 (+)
G2338743 NA non-coding upstream 91514 611466 ~ 611969 (+)
G2338741 NA non-coding upstream 94014 609097 ~ 609469 (+)
G2338796 NA non-coding downstream 2015 760297 ~ 760685 (+)
G2338797 NA non-coding downstream 3789 762071 ~ 762306 (+)
G2338799 NA non-coding downstream 9562 767844 ~ 768052 (+)
G2338800 NA non-coding downstream 10051 768333 ~ 768540 (+)
G2338801 NA non-coding downstream 20991 779273 ~ 781423 (+)
G2338488 NA other upstream 497255 205182 ~ 206228 (+)
LOC118947124 b9d1 other upstream 656614 40792 ~ 46887 (+)
G2338845 NA other downstream 170080 928362 ~ 929635 (+)
G2338775 NA non-coding upstream 4546 709791 ~ 710034 (+)
G2338774 NA non-coding upstream 5866 708451 ~ 708714 (+)
G2338773 NA non-coding upstream 7270 706990 ~ 707310 (+)
G2338772 NA non-coding upstream 7690 706549 ~ 706890 (+)

Expression


Co-expression Network