LOC110517977 (LOC102799139)


Basic Information

Item Value
gene id LOC110517977
gene name LOC102799139
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 839146 ~ 843678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972332.1
CCTTTTATGGCTCGAGCCGGGCATCTAACCGGGAGATAAAAACCACGCGCCCACCGACTACCGGTTCACTTTGAGGCGCCGTCACACGCAGTTCGTGCGGGATTATATCATTTACCCTTGAAACACCCCCCTCCCAAAACCAAAAGTTCAAAATGGAAGATGAAATCGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCCGGAGATGACGCGCCTCGGGCTGTCTTCCCCTCCATCGTCGGGCGTCCCAGGCATCAGGGAGTGATGGTTGGGATGGGCCAGAAAGACAGCTACGTGGGAGACGAGGCTCAGAGCAAGAGGGGCATCCTGACCCTGAAGTACCCCATTGAGCATGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGAGGGTGGCTCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTCAACCCCAAAGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCTGCCATGTACGTGGCCATCCAGGCCGTGTTGTCCCTGTACGCCTCTGGCCGTACCACCGGTATCGTCATGGACTCCGGTGACGGCGTGACCCACACAGTACCCATCTACGAGGGCTACGCTCTGCCCCACGCCATCCTGCGTCTGGATCTGGCCGGCCGCGACCTCACAGACTACCTGATGAAGATCCTGACGGAGCGCGGTTACAGCTTCACCACCACGGCCGAGAGGGAAATCGTACGAGACATCAAGGAGAAGCTGTGCTACGTGGCGCTGGACTTTGAGCAGGAGATGGGCACCgctgcctcctcttcctctctggagAAGAGCTACGAGCTGCCTGACGGACAGGTCATCACCATCGGCAACGAGAGGTTCCGCTGCCCAGAGGCCCTCTTCCAGCCCTCCTTCCTCGgtatgGAGTCTTGCGGTATCCACGAGACCACCTACAACTCCATCATGAAGTGTGACGTGGACATCCGTAAGGACCTGTACGCCAACACAGTGCTGTCCGGAGGAACCACCATGTACCCCGGCATCGCTGACAGGATGCAGAAGGAGATCACCTCTCTGGCCCCCTCCACCATGAAGATCAAGatcaTCGCCCCCCCAGAGCGTAAATACTCCGTCTGGATCGGAGGCTCCATCTTGGcttctctctccaccttccaACAGATGTGGATCAGCAAGCAGGAGTACGACGAGTCTGGTCCCTCCATCGTCCACCGTAAATGCTTCTAAACAGACTGTACCCATCCCAAACGACCGACCCAGCCACACCCGACTACCACTTCAGCTCTGCCACCAGACACACcacccagagggagagagaggggggcctgTGGAGTGAGCCCAAACCCAGCTTCTCAGTCTCATTGGCATGGCTTCTGTTATTTTGGCGCTTTTTTTGACTCAGGATctgtgaaaaacaaaaaaaataaacacaactgGAACGGTGAAACAGCGGATTAAAGATTTTTAAgagttaaaaaaa

Function

NR:

description
actin, cytoplasmic 1 isoform X1

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K05692 ACTB_G1; actin beta/gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972332.1 True 1533 mRNA 0.56 6 839146 843678
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110511299 LOC106591863 coding upstream 80864 703483 ~ 758282 (+)
LOC118947126 rpusd1 coding upstream 146103 679453 ~ 693043 (+)
LOC118947125 NA coding upstream 290718 465511 ~ 562271 (+)
LOC110516853 LOC106579185 coding upstream 402020 301775 ~ 437126 (+)
LOC118947116 fam83g coding upstream 619633 201747 ~ 219513 (+)
LOC110517915 atp5j2 coding downstream 178148 1021826 ~ 1024705 (+)
LOC118947121 NA coding downstream 182683 1026356 ~ 1028105 (+)
LOC110518375 LOC106595689 coding downstream 208514 1052192 ~ 1074031 (+)
LOC110514212 LOC106591425 coding downstream 235460 1079138 ~ 1147274 (+)
LOC118947122 NA coding downstream 293806 1137484 ~ 1139029 (+)
G2338813 NA non-coding upstream 16151 819209 ~ 822995 (+)
G2338811 NA non-coding upstream 27560 811045 ~ 811586 (+)
G2338803 NA non-coding upstream 54997 783544 ~ 784149 (+)
G2338801 NA non-coding upstream 57723 779273 ~ 781423 (+)
G2338800 NA non-coding upstream 70606 768333 ~ 768540 (+)
G2338820 NA non-coding downstream 4874 848552 ~ 854106 (+)
G2338819 NA non-coding downstream 10547 854225 ~ 855560 (+)
G2338822 LOC106602076 non-coding downstream 16594 860272 ~ 862660 (+)
G2338825 NA non-coding downstream 23836 867514 ~ 868304 (+)
G2338826 NA non-coding downstream 29117 872795 ~ 873711 (+)
G2338488 NA other upstream 632918 205182 ~ 206228 (+)
G2338845 NA other downstream 84684 928362 ~ 929635 (+)

Expression

LOC110517977(LOC102799139) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5000.
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LOC110517977(LOC102799139) Expression in each Bioproject

Bar chart with 21 bars.
LOC110517977(LOC102799139) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150000.
End of interactive chart.

Co-expression Network