LOC110517915 (atp5j2)


Basic Information

Item Value
gene id LOC110517915
gene name atp5j2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1021826 ~ 1024705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972329.1
AAACTTACTACGAAACGTGATTTTTGACAAAATCTGTATCTCTTctcgacaaaaaaaaaaaaaacggtccTCCCACAATCCTCTGCTTCCATTTTAGTCCCGTCATCCACTGCGGTCTTCACCCTCTCCAGCGAGCAAGATGGCGGACAGAATAGTTCCCTTGGGTGAGAAGCGTCTGATGGATGTGAAGCTGGGAGAGTTGGGCTCCTGGTTGGGCAAGAGGGACTTCACTCCTAACGGAGTCCTCGCCAGCATCCGCAATGgcCATGATAGATATTACAACAAGTACATCAATGTGAAGAAGGGAGGTATTGGAGGCGTGGCCATGCTGCTGGTTGGATACGTGGCCCTCAGTTACATGTGGGAGTACGACCACCTCAaGCACGACCGCTGGAGGAAGTACCACTAAAGCCCCTCCTCTCCTGACCCAGCAGGGCAAaagcctgacctctgaccccctaGCTCCAGctgtctgtataataccaccgtTGTGACCAAGAATAAATAAAACTACTTCTAATATTTAATT
>XM_036972328.1
AACCTGTAACCATGAATGCTATCTTCGGTGGTGTCTGTTTTGTGTGAGGGACGGCAGGTGTGTATTTACTGTGTGAGAGGGACGGCAGGTGTGTATTTACTGTGTGAGAGGGACGGCAGGTGtgtatttactgtgtgtgtttgtgtacctgtGTCCTTAGTTCCCTTGGGTGAGAAGCGTCTGATGGATGTGAAGCTGGGAGAGTTGGGCTCCTGGTTGGGCAAGAGGGACTTCACTCCTAACGGAGTCCTCGCCAGCATCCGCAATGgcCATGATAGATATTACAACAAGTACATCAATGTGAAGAAGGGAGGTATTGGAGGCGTGGCCATGCTGCTGGTTGGATACGTGGCCCTCAGTTACATGTGGGAGTACGACCACCTCAaGCACGACCGCTGGAGGAAGTACCACTAAAGCCCCTCCTCTCCTGACCCAGCAGGGCAAaagcctgacctctgaccccctaGCTCCAGctgtctgtataataccaccgtTGTGACCAAGAATAAATAAAACTACTTCTAATATTTAA
>TU2677528
CTGCGGTCTTCACCCTCTCCAGCGAGCAAGATGGCGGACAGAATAGTTCCCTTGGGTGAGAAGCGTCTGATGGATGTGAAGCTGGGAGAGTTGGGCTCCTGGTTGGGCAAGAGGGACTTCACTCCTAACGGAGTCCTCGCCAGCATCCGCAATGgcCATGATAGATATTACAACAAGTACATCAATGTGAAGAAGGGAGGTATTGGAGGCGTGGCCATGCTGCTGGTTGGATACGTGGCCCTCAGTTACATGTGGGAGTACGACCACCTCAaGCACGACCGCTGGAGGAAGTACCACTAAAGCCCCTCCTCTCCTGACCCAGCAGGGCAAaagcctgacctctgaccccctaGCTCCAGctgtctgtataataccaccgtTGTGACCAAGAATAAATAAAACTACTTCTAATATTTAA

Function

symbol description
atp5j2 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and skeleton. Orthologous to human ATP5MF (ATP synthase membrane subunit f).

NR:

description
ATP synthase subunit f, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972329.1 False 529 mRNA 0.49 4 1021826 1024705
XM_036972328.1 False 532 mRNA 0.50 4 1022819 1024703
TU2677528 True 418 TUCP 0.52 4 1021935 1024703

Neighbor

gene id symbol gene type direction distance location
LOC110517977 LOC102799139 coding upstream 178148 839146 ~ 843678 (+)
LOC110511299 LOC106591863 coding upstream 263544 703483 ~ 758282 (+)
LOC118947126 rpusd1 coding upstream 328783 679453 ~ 693043 (+)
LOC118947125 NA coding upstream 473398 465511 ~ 562271 (+)
LOC110516853 LOC106579185 coding upstream 584700 301775 ~ 437126 (+)
LOC118947121 NA coding downstream 1656 1026356 ~ 1028105 (+)
LOC110518375 LOC106595689 coding downstream 27487 1052192 ~ 1074031 (+)
LOC110514212 LOC106591425 coding downstream 54433 1079138 ~ 1147274 (+)
LOC118947122 NA coding downstream 112779 1137484 ~ 1139029 (+)
LOC110516858 top3a coding downstream 158806 1183511 ~ 1237132 (+)
G2338838 NA non-coding upstream 18924 1000854 ~ 1002902 (+)
G2338871 NA non-coding upstream 45245 974509 ~ 976581 (+)
G2338870 NA non-coding upstream 47617 973669 ~ 974209 (+)
G2338863 NA non-coding upstream 70016 950995 ~ 951810 (+)
G2338860 NA non-coding upstream 73525 947304 ~ 948301 (+)
G2338888 NA non-coding downstream 20167 1044872 ~ 1045457 (+)
G2338893 NA non-coding downstream 49921 1074626 ~ 1076737 (+)
G2338904 NA non-coding downstream 73986 1098691 ~ 1102770 (+)
G2338845 NA other upstream 92191 928362 ~ 929635 (+)

Expression


Co-expression Network