LOC118947127 (LOC106594823)


Basic Information

Item Value
gene id LOC118947127
gene name LOC106594823
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1436499 ~ 1488403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972341.1
cCAGACTGAAGAAGCTCCAGAGAGCCCTTACCAGGCCAGCCTGAACCCCGCCCAGCACCACCCCTCCTCCAGGAAACACACTGCTACACGAGTAGCCCCTTCTGATGACATGGTGCGGTCCAGGGCCCCCCCTCCTGATGACTTGGTGCGGTCCAGGGCCCCCCCTCCAGAAGGAGTGGTCCAGTCTGATGCGTCTAACTCAGAAAGCCCTTCCCACAACATCAAGGACATGATCAGACAGTACCAACACCCATCTAACCCTGCACCCAGccagcctgcacacacacacaggaggggggaggggaagaTGTTTACAAAGAAGCCGGACCCTCATGATGAAGCCATGTATATCCTGAAAGACCAGATGGCCAACCCAccaccacagaagTCTTTCGCTCCGGCGACGCCTCGGGAACCAAAAGAGGAGGGTGGATCCAAAGTAACCAAGGCAACAAAACCCGGCCCACCTGCCCTAGCCGACTCCCACAGcagccccctccccccaccaGtgtcCAGAGAGTTGCCTGTAGAGGAAGAGACCAGCCAGACCCAGCTACACCACAGGAGCAGTGAAGAGCACTACACTTACACTAACACACCCTGGAGGATTTACCTGAGGAAAGaggtgttctacCCTAAAGACAACTTCAACACTCCTCTGTTGCTGGAGCTGCTGTTCAGACAGATAGTCCACGACACCTTCTCAGAGGCCTGCATCCGCATCACTCAGGAGGAGAGGACCAAGATGAAGGCTCTGTTTGtggagcACCAGGTGGGTCAGGATGGAGCCACACAGGATGAGAGTGTGAAGAAGAAGATCGTGACGATGGCTAGAGACTCCTGGGAAATATATTTCTCACGACTCTTCCCTGCCTCGggcagTGTGGGTACTGGGGTGCAGGTGGTCTCTGTGTCTCATCGAGGCATCAAGCTGCTGAAGATGGTGAGAAGCAGCGCTGTTGTCCCAGACTACTTCAGAGTGCTACAcccttacagTTACGCGGACATCCTGTTTGTGTCCATTCCATCTAAGAACATGTTGGAGTTTAACCTGACCAACGAGAAGCTGATTCTGTTCTCCGCCAAGGCTCCACAGGTTAAACACATGGTGGACTACTTCATCACAGAACTGAAGAAGGACTCTGAGTATGTGGTCGCAGTGAGGAACTACATCACAGAGGACAGAACTCTGCTCAGCTTCCACAAGGGAGACATCATCAGATTACACAGCGTGGAGGGGCTGGAGGAGGgctggcGGTACGGGGCGGTGTATGGACGGTGGGGTGTGTTTCCAGGTGAGTGTGTTCAGCCGGTGGCCGCTCCAGACTTTCTGGTTCTCCCTGCTGAGAGGGCGGAGCCTCGTGACAGACACGGCCGTGTTGCCGCCTCCGCTGCAATCGCCGTGGCGATGGGCTCTACAGTCGCCGCCCATGAACTGGACCTCAACACAgaggctgtgGTAGGGTATGGTGAGGACAGCAGCAGTCTCCATCTAGAGGGACTCCCTCTACAGGCCAGTCAGTACACCATGGAGGAGTTCTCCAGGAAGTACTACAGACGGGCTCAGAGACACAGGGACCAGCTGAAGACCAGGAAGGGGAAGGATACCAGAGAACCAGCTGACATGGTTACATACTCTAAGTCCCCTCTCCAGGAGTCTCTGATAGACTTCACAGACAGCAACATGAACAAGGTGGCAGCTGACATCTCCCTGGCTGTGATGAAGTTCATGGGAGACTACCCTCTGAagggacagacagaacaggaccTGGTCTCAACAATCCTAAagctcAGTGGGGAGTATGGTCTGATGAAAGATGAAGCTTACTGCCAGGTGATGAAACAGGTCACAGGAAACACCAGCTCCAAAACggACAGTTGTCAGAGAGGCTGGAGGCTACTCTACATCCTGACTGCGTTCCATCGCTGTTCTGAGGTCCTGAAGCCCTTCCTTTTAACGTTCCTGCTGGACGCCTGCTCTGGTCCTGGAGTCCACTACCAAGGTATAGCCAAGGCGTGTGAGCAGAACCTGAGGAGGACCTTCCAGTACGGAGGAAGAATCGAACACCCCAACAGCATGGAGCTAAAGGCCATGCTgGCTGGGCGGAGCTCCAAGAGACAGTTGTTCCTCCTACCAGGCGGCATCGAGAGACACCTTAAAATCAAGACCTGCtcagtgtctcTGGATGCTATAGAGGAGCTATGTAATGACATGGGACTGCACAGACTGGAGGCCATGGATGAGTACGCTGTATTTGTGGTCACACACCGAGGTCAGAATGTCCGTCCCCTCAATAAGAGGGAGTACATCCTGGACATTACTACGGAAGCGGAGCCAGTGGACAGTAACTACAGCCTGTGGTTCAGGAGGGTCATCTGGACACAGCCGCTTAAATTTGACAACGAGCTCTGTGTCACCATGCATTATAACCAGGTGTTACCAGACTATCTGAAGGCCTTGCTGAGTGTGGTTCCTCAGAGTAAAGCCAGTGAGCAGCAGCTGCAGCAGTTGGCCAAGCTGGCAGCATTACAACACCGTGCTAAAGATACCGTCTTCCTGCCCACCATtgGTGAGGTCCAGGAGTATGTCCCCCCCCAGCTCTACATCAGACAGCCTCCTCAGCCCTGGCTCAACATGGTCACTCAGCATATGCAGCAGGTCTCTCCTCTGAGTCCTCACCAGGCCAGGGCTCAGTTCCTCGGTCTGGTCAGTGCGTTCCCCATGTTTGGTTCCTCCTTCTTCTACATCCAGTCCAGCAGCAACATCTCCATCCTGGCTCCCTGTGTGTTGGCTGTCAACCAGAACGGACTGCACTTCCTACACAAGGACTCACATgaggcCACGGCGCGTTACCCTCTGAATGAGATCCAGTCCACCAGAACCCAGAGACCAACAGGAGGCTCCAGCTCCTCCTATCCCTACATAGACATTCTGCTGGGAGACCTGCTGACACAGCGAATCACACAGCTGCAGCTAGAacagGGTCTGGAGCTGTGTCGGGTCATTGCCATGCACATGGAAAACATGCTGTCTGTCCGGGAGAAGAGACTCACCCTGCCACCGAGTGAGATCACTCTgttataacacactgtctgtctgtctgtctgtctgtctgtctgtctgtctgccagtcagtcagtcagtcagtcagtcagtcagacagtccgGGAGAAGAGACGTTAGAAGATGGTAGATGGTGGTAGATAGtggtagatggtggtagttagtggtggatggtggtagatggt
>TU2678190
CGGTGGGGTGTGTTTCCAGGTGAGTGTGTTCAGCCGGTGGCCGCTCCAGACTTTCTGGTTCTCCCTGCTGAGAGGGCGGAGCCTCGTGACAGACACGGCCGTGTTGCCGCCTCCGCTGCAATCGCCGTGGCGATGGGCTCTACAGTCGCCGCCCATGAACTGGACCTCAACACAgaggctgtgGTAGGGTATGGTGAGGACAGCAGCAGTCTCCATCTAGAGGGACTCCCTCTACAGGCCAGTCAGTACACCATGGAGGAGTTCTCCAGGAAGTACTACAGACGGGCTCAGAGACACAGGGACCAGCTGAAGACCAGGAAGGGGAAGGATACCAGAGAACCAGCTGACATGGTTACATACTCTAAGTCCCCTCTCCAGGAGTCTCTGATAGACTTCACAGACAGCAACATGAACAAGGTGGCAGCTGACATCTCCCTGGCTGTGATGAAGTTCATGGGAGACTACCCTCTGAagggacagacagaacaggaccTGGTCTCAACAATCCTAAagctcAGTGGGGAGTATGGTCTGATGAAAGATGAAGCTTACTGCCAGGTGATGAAACAGGTCACAGGAAACACCAGCTCCAAAACggACAGTTGTCAGAGAGGCTGGAGGCTACTCTACATCCTGACTGCGTTCCATCGCTGTTCTGAGGTCCTGAAGCCCTTCCTTTTAACGTTCCTGCTGGACGCCTGCTCTGGTCCTGGAGTCCACTACCAAGgTATAGCCAAGGCGTGTGATTGGCTGTGGTTGTTGATTGACATGTATAGC
>TU2678193
CGGTGGGGTGTGTTTCCAGGTGAGTGTGTTCAGCCGGTGGCCGCTCCAGACTTTCTGGTTCTCCCTGCTGAGAGGGCGGAGCCTCGTGACAGACACGGCCGTGTTGCCGCCTCCGCTGCAATCGCCGTGGCGATGGGCTCTACAGTCGCCGCCCATGAACTGGACCTCAACACAgaggctgtgGTAGGGTATGGTGAGGACAGCAGCAGTCTCCATCTAGAGGGACTCCCTCTACAGGCCAGTCAGTACACCATGGAGGAGTTCTCCAGGAAGTACTACAGACGGGCTCAGAGACACAGGGACCAGCTGAAGACCAGGAAGGGGAAGGATACCAGAGAACCAGCTGACATGGTTACATACTCTAAGTCCCCTCTCCAGGAGTCTCTGATAGACTTCACAGACAGCAACATGAACAAGGTGGCAGCTGACATCTCCCTGGCTGTGATGAAGTTCATGGGAGACTACCCTCTGAagggacagacagaacaggaccTGGTCTCAACAATCCTAAagctcAGTGGGGAGTATGGTCTGATGAAAGATGAAGCTTACTGCCAGGTGATGAAACAGGTCACAGGAAACACCAGCTCCAAAACG
>TU2678199
CGGTGGGGTGTGTTTCCAGGTGAGTGTGTTCAGCCGGTGGCCGCTCCAGACTTTCTGGTTCTCCCTGCTGAGAGGGCGGAGCCTCGTGACAGACACGGCCGTGTTGCCGCCTCCGCTGCAATCGCCGTGGCGATGGGCTCTACAGTCGCCGCCCATGAACTGGACCTCAACACAgaggctgtgGTAGGGTATGGTGAGGACAGCAGCAGTCTCCATCTAGAGGGACTCCCTCTACAGGCCAGTCAGTACACCATGGAGGAGTTCTCCAGGAAGTACTACAGACGGGCTCAGAGACACAGGGACCAGCTGAAGACCAGGAAGGGGAAGGATACCAGAGAACCAGCTGACATGGTTACATACTCTAAGTCCCCTCTCCAGGAGTCTCTGATAGACTTCACAGACAGCAACATGAACAAGGTGGCAGCTGACATCTCCCTGGCTGTGATGAAGTTCATGGGAGACTACCCTCTGAagggacagacagaacaggaccTGGTCTCAACAATCCTAAaggtactcactcactcac

Function

NR:

description
unconventional myosin-XV-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972341.1 False 3249 mRNA 0.55 25 1436499 1488403
TU2678190 False 777 TUCP 0.55 7 1444961 1454271
TU2678193 False 597 TUCP 0.55 5 1449538 1454271
TU2678199 True 529 TUCP 0.56 4 1449800 1454271

Neighbor

gene id symbol gene type direction distance location
LOC110516509 llgl1 coding downstream 18716 1326668 ~ 1417783 (-)
LOC110516784 smcr8 coding downstream 253082 1158052 ~ 1183417 (-)
LOC118947123 NA coding downstream 351716 1083692 ~ 1086303 (-)
LOC110518374 cpsf4 coding downstream 388320 1026745 ~ 1048179 (-)
LOC110513313 slc29a4 coding downstream 433315 973741 ~ 1003184 (-)
G2339268 NA non-coding downstream 5928 1430291 ~ 1430571 (-)
G2339267 NA non-coding downstream 8679 1427131 ~ 1427820 (-)
G2339263 NA non-coding downstream 13589 1422671 ~ 1422910 (-)
G2339258 NA non-coding downstream 14997 1418389 ~ 1421502 (-)
G2339253 NA non-coding downstream 29843 1403902 ~ 1406656 (-)
G2339205 NA other downstream 193117 1242074 ~ 1243382 (-)
G2339202 NA other downstream 200911 1235204 ~ 1235588 (-)
G2339156 NA other downstream 313860 1107732 ~ 1122639 (-)
G2339291 NA non-coding upstream 11183 1465454 ~ 1466490 (-)
G2339292 NA non-coding upstream 12583 1466854 ~ 1471138 (-)
G2339293 NA non-coding upstream 12786 1467057 ~ 1470739 (-)

Expression

LOC118947127(LOC106594823) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC118947127(LOC106594823) Expression in each Bioproject

Bar chart with 16 bars.
LOC118947127(LOC106594823) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network