XLOC_004230 (nxph2b)


Basic Information

Item Value
gene id XLOC_004230
gene name nxph2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33846440 ~ 33857911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008081
ACATCAGTTTAGCAAAGAGAGAGCGAGGATGCAGCAAAGCTGGACTTTCACCCAGGGGACTGCTTAGAGagcagttttattatttgtttttctttcggATAGACAATCACATCCACACATAATCGCGTTAGGATATGTGAGTGTTGCAGAGAAAAGGCGCGCAGCCCAGATGAGCAGAGCTAAGAGGATTTAATGCAGCTGGACACGAGCCACGCTGAGTAAAGAAGAagattatattgttttaatcaAATGCAAAGAAGTTTTCATTGCCGGTCACTTTGAGTTCGGACTGTCCGGGAGCGATGTTCGTCATCACTGGGTTTCAGTCTCACTCTTTGCGCACTGTAAGGATGTTCAAAGCACAGAAATGCATGGCTCCAACTCTTCTGTAGAAGGgcATACTGATACCAGACCAAGCCACAAGTGGACCTGATCTTTACTAACCCTGTGAGCTGGACTTACAAAATACATGAAGATGTGCCAGTGCTACTCTGCCCTGCTAATGCTCTGCTTACACATGGTGACATGTGGAGCGAAGCTCGGAGCTGCTGTGGCTCCTCTGGGTTGGGCAGAAAATGATAAAGAGGGAAGTGTTTCTCCTTACGCCTCTCGTTCTGAGATTCTCAAATCCCTGCGGCTTTTCTCCCACACGTCCCAATCTAACAGCCCAAACCATGAAACAGCTCCGGACCCTGGGGCACTGGATCTGTGGGCTTGGTTATCCAACCACACCGATAGCGAGGGAACCCTCTCGAGGGCCAAACGTCGTCCCTATGTGAAAACCGGCAAGTTTAAGAAGATGTTCGGCTGGGGCGACTTCCATTCCAACATCAAAACCGTCAAGCTCAACCTTCTCATTACTGGGAAAATTGTCGACCACGGCAACGGGACCTTCAGTGTCTATTTCCGTCACAATTCCACCGGTCTAGGGAACGTGTCTGTTAGTCTGGTCCCTCCTTCCAAGGCTGTCGATTTTGAGATCACTCAACAGGAGACCATCGAGGTGCCCAAAGACAGTAAGGCGTTCAACTGTCGAGTGGAATACGAGAAGACGGACCGAAGCAAGAGGACGTCCGTTTGCAGCGACTTCCCTAACAGGGTTTGCTTTCAGGAGCAAACCCAAAGTCATGTGTCCTGGCTGTGCTCCAAGCCCTTCAAGGTGATCTGCATCTACATTGACTTCTTCAGTGCAGACTATAAGCTGGTACAGAAGGTCTGTCCAGACTACAACTACCACAGTGACACTCCATACACCTCAGTGGGATAGCATATAGCCTGCTTTGGGTTTGTGGAGGTATGTGAGGTGCCGTTTCATTGTTACAGCCTCTCTGTCTTGTAGTTTGCTCGTCCTGTTCATAAAGGATGGGATAAATGGAAGAAAGGTCAGATGAGGAATCACTCTTTCCAAACATACATGACCTGTCCTTCTTTAGGGAGGTTGAGGTTGCACTTTATCTTACAGTTCTGTTTCACAAGAAATAGCTCACcccaaaaatgtattcatttcttattttattcatttattatttgtctcctattaaacacaaaataggatattttgaagaatgctggtaggtggcatgcattgacttccatagtcatttttttttcttctatggaagttgatgggtgccagcaaccaacattcttccaaatatctttgTTTTATGTGTTCAACTAAAAAAGAAATCCattaaacc

Function

symbol description
nxph2b Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region. Orthologous to human NXPH2 (neurexophilin 2).

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090708-1 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region. Orthologous to human NXPH2 (neurexophilin 2).

Ensembl:

ensembl_id ENSDARG00000079188

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008081 True 1700 mRNA 0.46 3 33846440 33857911

Neighbor

gene id symbol gene type direction distance location
XLOC_004229 NA coding downstream 157491 33676834 ~ 33688949 (-)
XLOC_004228 lims1 coding downstream 227828 33598213 ~ 33618612 (-)
XLOC_004227 NA coding downstream 444964 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 coding downstream 647836 33190658 ~ 33198604 (-)
XLOC_004225 NA coding downstream 666645 33163180 ~ 33179795 (-)
XLOC_004231 si:ch211-227n13.3 coding upstream 3266 33861177 ~ 33868908 (-)
XLOC_004232 phka2 coding upstream 12446 33870357 ~ 33919309 (-)
XLOC_004233 col6a2 coding upstream 63447 33921358 ~ 33960318 (-)
XLOC_004234 CR925698.1 coding upstream 108247 33966158 ~ 33966272 (-)
XLOC_004235 NA coding upstream 134122 33992033 ~ 33993147 (-)
XLOC_004063 CR854846.1 misc downstream 17718762 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21154749 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21224673 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21255144 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21333178 12512966 ~ 12513262 (-)
XLOC_004224 NA non-coding downstream 781887 32977282 ~ 33064553 (-)
XLOC_004243 FO681390.1 non-coding upstream 391545 34249456 ~ 34255220 (-)
XLOC_004244 NA non-coding upstream 457614 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 non-coding upstream 497633 34355544 ~ 34355662 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_07680537_07684881 NXPH2B coding CI01000306 null 7679868 ~ 7685987 (-)