G2339019


Basic Information

Item Value
gene id G2339019
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 692505 ~ 702324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2677748
CAAAAATAgaacaaataaaatgtttttattttgccATCCCCTGACCCGGAGGGGGTCATGATTCATATTaccagagaggggaagaggatgaagagaggagaaggagcagggggatggagagaggagaaggagaagggggatgaagagaggagaaggagaattcAGACATCAGTCCACTCAGACAACCACTGCTGACACatcctcctctgctcctcactctcctctctccccctccacctcttcctcctctcctcctgctgcctgctcctctcctcctgctgtctcttcttctcctcccgctctgtcctctcctccgCCGCCCTGTGCTCCAGCAGGGTCTCCACGACTCCCTCTACAGTCCGGAGGCAGCGCTGCGGGCGCCAGCGAGGGTCAGTGGGCGTGGTGAAGGGGTCGGGGGCAGCGGCCTGCAGGGGGAGTGGCTCCAGGGGGAGGTGTAGGAGGTGTGCGTGCAGCATCATGCGATAGGGGGCGCTGTCCTCTCCCAGGCTGTAGGTGTAGTCTCCTACGATGGGGTGCCCTACCGCCTCACAGTGAACCCTCAGCTGGTGGGTACGACCTG
>TU2677746
CAAAAATAgaacaaataaaatgtttttattttgccATCCCCTGACCCGGAGGGGGTCATGATTCATATTaccagagaggggaagaggtgtAAACTGTAAATCTTTGACATGGCTTCCATTTGAGTCATTTAtagcagacactctaatccagagaGCAACGTCAAAACAACAATAAAAAGATTTTCAAAATGGTCAAACAAATTGCCATCAAAAAAAAAGGCTGAGTAAGTATTTATTTATCCAGGCTGAGTGTCTTCTTGTTGGATGTGAGACGGAGGGCAGACAGTTGGACTCCTGCTGTGCTACGCTCCCACCAGACTCACACAATACATCTTCTTCAATACTGAGTGACAAGCAGAGAGGCATTACATACAGATCAAATATTAAAAGATGCTTTTGGTTGCAGAGTCTCAAGGAGAGGTTAGCAGAGGAAGGGGGTGAtgaaggagaagggatgggggatggagagaggagaaggagaaggaatgaggatgaagagaggagaaggagaagggatgagggatggagagaggagaaggagaagagggatggagagaggagaaggagaaggggaatgaagagaggagaaggagaaggggaatgaagagaggagaaggagaaggggaatgaagagaggagaaggagaaggggaatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggagaaggggaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggagaaggggaaggaatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagcagggggatggagagaggagaaggagaagggatgagggataaagagaggagaaggggaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggagaaggggaaggaatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagcagggggatggagagaggagaaggagaagggggatgaagagaggagaaggagaattcAGACATCAGTCCACTCAGACAACCACTGCTGACACatcctcctctgctcctcactctcctctctccccctccacctcttcctcctctcctcctgctgcctgctcctctcctcctgctgtctcttcttctcctcccgctctgtcctctcctccgCCGCCCTGTGCTCCAGCAGGGTCTCCACGACTCCCTCTACAGTCCGGAGGCAGCGCTGCGGGCGCCAGCGAGGGTCAGTGGGCGTGGTGAAGGGGTCGGGGGCAGCGGCCTGC
>TU2677747
TCCAGGaataaatgtactgtatacaAACAGATGTTCACGTCCTTTTTCTGTGTATTATAGTATTGAATTTTCTCAGTGAACTTTGACCTACTGTTGAAATCGGTATCTAAACAGCTCAGTGTGATACACAACAGCGTTCAGCTAGACAAAACTGACCTTCTGGTATAGTGCAGTAAAGCTGAGTAAGTATTTATTTATCCAGGCTGAGTGTCTTCTTGTTGGATGTGAGACGGAGGGCAGACAGTTGGACTCCTGCTGTGCTACGCTCCCACCAGACTCACACAATACATCTTCTTCAATACTGAGTGACAAGCAGAGAGGCATTACATACAGATCAAATATTAAAAGATGCTTTTGGTTGCAGAGTCTCAAGGAGAGGTTAGCAGAGGAAGGGGGTGAtgaaggagaagggatgggggatggagagaggagaaggagaaggaatgaggatgaagagaggagaaggagaagggatgagggatggagagaggagaaggagaagagggatggagagaggagaaggagaaggggaatgaagagaggagaaggagaaggggaatgaagagaggagaaggagaaggggaatgaagagaggagaaggagaaggggaatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggagaaggggaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggagaaggggaaggaatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagcagggggatggagagaggagaaggagaagggatgagggataaagagaggagaaggggaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaaggagaagggatgagggataaagagaggagaaggggaaggaatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatgaggatgaagagaggagaaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagaagggatgagggataaagagaggcgaagggatgaggatgaagagaggagaagggatggaggatgaagagaggagaaggagcagggggatggagagaggagaaggagaagggggatgaagagaggagaaggagaattcAGACATCAGTCCACTCAGACAACCACTGCTGACACatcctcctctgctcctcactctcctctctccccctccacctcttcctcctctcctcctgctgcctgctcctctcctcctgctgtctcttcttctcctcccgctctgtcctctcctccgCCGCCCTGTGCTCCAGCAGGGTCTCCACGACTCCCTCTACAGTCCGGAGGCAGCGCTGCGGGCGCCAGCGAGGGTCAGTGGGCGTGGTGAAGGGGTCGGGGGCAGCGGCCTGC

Function

NR:

description
RNA pseudouridylate synthase domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2677748 False 580 TUCP 0.60 2 692505 695852
TU2677746 False 2099 lncRNA 0.51 2 692656 695852
TU2677747 True 2057 lncRNA 0.51 3 692656 702324

Neighbor

gene id symbol gene type direction distance location
LOC110511701 traf7 coding downstream 180184 446215 ~ 512472 (-)
prpsap2 LOC103393631 coding downstream 399336 247351 ~ 293320 (-)
LOC110511686 LOC106591320 coding downstream 574567 52434 ~ 118089 (-)
LOC118947117 NA coding downstream 644356 47623 ~ 51453 (-)
LOC110517482 fscn1 coding upstream 78442 780766 ~ 808870 (-)
LOC118947119 NA coding upstream 96839 799163 ~ 800016 (-)
LOC110516334 LOC106594246 coding upstream 153038 855362 ~ 958479 (-)
LOC110513313 slc29a4 coding upstream 271417 973741 ~ 1003184 (-)
LOC110518374 cpsf4 coding upstream 324421 1026745 ~ 1048179 (-)
G2339017 LOC106595364 non-coding downstream 10939 680731 ~ 681717 (-)
G2338757 NA non-coding downstream 18199 673690 ~ 674457 (-)
G2338756 NA non-coding downstream 20793 671661 ~ 671863 (-)
G2338747 NA non-coding downstream 70543 621913 ~ 622113 (-)
G2338744 NA non-coding downstream 82132 610186 ~ 610524 (-)
G2339024 NA non-coding upstream 1160 703484 ~ 703821 (-)
G2339026 LOC106591863 non-coding upstream 8088 710412 ~ 711989 (-)
G2339027 NA non-coding upstream 9742 712066 ~ 713110 (-)
G2339072 NA non-coding upstream 55173 757497 ~ 760194 (-)
G2339075 NA non-coding upstream 61504 763828 ~ 764623 (-)
G2338752 NA other downstream 26559 663537 ~ 666097 (-)
G2338753 NA other downstream 27971 664228 ~ 664685 (-)
G2338725 NA other downstream 122278 569827 ~ 570378 (-)
G2338672 NA other downstream 313773 378179 ~ 378883 (-)
G2339043 LOC102799139 other upstream 136859 839183 ~ 844104 (-)
G2339109 NA other upstream 238652 940976 ~ 941892 (-)
G2339060 NA other upstream 260825 963149 ~ 969154 (-)
G2339121 NA other upstream 295607 997931 ~ 1168624 (-)

Expression


Co-expression Network