G2339026 (LOC106591863)


Basic Information

Item Value
gene id G2339026
gene name LOC106591863
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 710412 ~ 711989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2677759
CCAGTCGTGTCTGTACGACTCACCACTCCTCTGACCAGTGCTCTGACGTGGGGCTGCAGCTGAGGTGTCTCTGGTCCCCGGACTTCCTGTTGGTCTGAGGGACCTGCCCTCTCCTCCGCTGTCCTGGGGACAACTGGGACGACAGGGACTGGGACTATGGGGTTAGGGTTCAGGGGAACAGCGAGAGCTGGGATGGGGAGGGGAGGTTGAGTGTCTGGCCGGTTGACCACAACTACCACCTGTGGCCCCAGGGACAGAGGGCGGTCGTGTGTCAGCAGCGGGGCTCCGGACTGGGGGTTAAGGCCCCCAAGAGTCTGGCTGCCCAGGGTGATGCGATGGCCGGTCTCTGGGGGGCCCAGACGCTCGGGGGCAGCAGCTATCAGCACGGCGGGGGCAGGGACGCCACAGGGGCCCGCAGGACACCGCTGGGGGGCGACCTGGGGAACAGGTTGGGGATGAAGGGATCTGGGTTGTTGGATCTGGAAGGCATGGGTTAGGAGGAGAGCCTGGGGGGGCAGGGGGGGCCGAGGCTGGTTGAGGGGTCCAGGGTGGAGCTGCTGTAGGGGGGATCGGGGCCGGGCATGGGGCTGAGGGGGTGCAGGGGGCTGAACCTGAGGGAGCAAAACTAACTTGACCTCCTGCAGGACAGGCCTGGTGAAGGGTTGATGTCTGGTCTGGGTTGAGGTGGATGGGGCGGAGGTGTCTCCGTCTCTGTACTGTGAGGTGGATGGGGCGGAGGTGTCTCTGTACTGTGAGGTGGATGGGGCGGAGGTGTCTCTGTACTGTGAAGTGGATGGGGCGGAGGTGTCTCTGTACTGTGAGGTGGATGGGGCGGAGGTTTCTCTGCACTGTGAGGTGGGTGGAAGGGGTGCAGTCCGATGACCGTCAACCTCTTTTAGCTCTATGATTGGTCCATCGCCTTCAGAGGCCACACCCCAAAGTGCTGCTGGACGAATCACACGTCGCCGGGCA
>TU2677758
CCAGTCGTGTCTGTACGACTCACCACTCCTCTGACCAGTGCTCTGACGTGGGGCTGCAGCTGAGGTGTCTCTGGTCCCCGGACTTCCTGTTGGTCTGAGGGACCTGCCCTCTCCTCCGCTGTCCTGGGGACAACTGGGACGACAGGGACTGGGACTATGGGGTTAGGGTTCAGGGGAACAGCGAGAGCTGGGATGGGGAGGGGAGGTTGAGTGTCTGGCCGGTTGACCACAACTACCACCTGTGGCCCCAGGGACAGAGGGCGGTCGTGTGTCAGCAGCGGGGCTCCGGACTGGGGGTTAAGGCCCCCAAGAGTCTGGCTGCCCAGGGTGATGCGATGGCCGGTCTCTGGGGGGCCCAGACGCTCGGGGGCAGCAGCTATCAGCACGGCGGGGGCAGGGACGCCACAGGGGCCCGCAGGACACCGCTGGGGGGCGACCTGGGGAACAGGTTGGGGATGAAGGGATCTGGGTTGTTGGATCTGGAAGGCATGGGTTAGGAGGAGAGCCTGGGGGGGCAGGGGGGGCCGAGGCTGGTTGAGGGGTCCAGGGTGGAGCTGCTGTAGGGGGGATCGGGGCCGGGCATGGGGCTGAGGGGGTGCAGGGGGCTGAACCTGAGGGAGCAAAACTAACTTGACCTCCTGCAGGACAGGCCTGGTGAAGGGTTGATGTCTGGTCTGGGTTGAGGTGGATGGGGCGGAGGTGTCTCCGTCTCTGTACTGTGAGGTGGATGGGGCGGAGGTGTCTCCGTCTCTGTACTGTGAGG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF216-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2677759 False 972 lncRNA 0.64 3 710412 711989
TU2677758 True 763 lncRNA 0.66 2 711005 711989

Neighbor

gene id symbol gene type direction distance location
LOC110511701 traf7 coding downstream 197940 446215 ~ 512472 (-)
prpsap2 LOC103393631 coding downstream 417092 247351 ~ 293320 (-)
LOC110511686 LOC106591320 coding downstream 592323 52434 ~ 118089 (-)
LOC118947117 NA coding downstream 662112 47623 ~ 51453 (-)
LOC110517482 fscn1 coding upstream 68777 780766 ~ 808870 (-)
LOC118947119 NA coding upstream 87174 799163 ~ 800016 (-)
LOC110516334 LOC106594246 coding upstream 143373 855362 ~ 958479 (-)
LOC110513313 slc29a4 coding upstream 261752 973741 ~ 1003184 (-)
LOC110518374 cpsf4 coding upstream 314756 1026745 ~ 1048179 (-)
G2339024 NA non-coding downstream 6591 703484 ~ 703821 (-)
G2339019 NA non-coding downstream 8088 692505 ~ 702324 (-)
G2339017 LOC106595364 non-coding downstream 28695 680731 ~ 681717 (-)
G2338757 NA non-coding downstream 35955 673690 ~ 674457 (-)
G2338756 NA non-coding downstream 38549 671661 ~ 671863 (-)
G2339027 NA non-coding upstream 77 712066 ~ 713110 (-)
G2339072 NA non-coding upstream 45508 757497 ~ 760194 (-)
G2339075 NA non-coding upstream 51839 763828 ~ 764623 (-)
G2339078 NA non-coding upstream 76505 788494 ~ 789267 (-)
G2339063 NA non-coding upstream 102095 814084 ~ 815554 (-)
G2338752 NA other downstream 44315 663537 ~ 666097 (-)
G2338753 NA other downstream 45727 664228 ~ 664685 (-)
G2338725 NA other downstream 140034 569827 ~ 570378 (-)
G2339043 LOC102799139 other upstream 127194 839183 ~ 844104 (-)
G2339109 NA other upstream 228987 940976 ~ 941892 (-)
G2339060 NA other upstream 251160 963149 ~ 969154 (-)
G2339121 NA other upstream 285942 997931 ~ 1168624 (-)

Expression


Co-expression Network