G2339027


Basic Information

Item Value
gene id G2339027
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 712066 ~ 713110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2677760
CCCTAGTTAACACACAGGGTTCACACACGTCCCTACCTGTGAGTTGTCGTTGCAGGGTTCCAGTAGCATGCTGCTCTGAGCCGCGGAGGCTGAACTCTCTCTCTGAGGGAAGGCTGGGTTCTCCAGCAACATGTTACAGATACTGGACACAGACACTCGCAGGTTAAATACAGCGACACAGATATCAGAGAGTTACAGAATGctggtacacagagagagagagaaaactaaATAGCAGGAGTTttatattttagtaatttagctcTGATCTAGAacaaggtgagacaaccacagaCAACCACATTTCACAGTCATAGAGATAGTTGTAGTTCTAACAGATTGGGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTAACAGATTGGGATCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCGGGTCAGTGGTAGTCATGGAGATACTTGTAGTTCTAACAGATTGGGATCGTTCGGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAGTGTTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAATGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTATTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCATTGGTCTGGATCAGTTCTGCTACATAGTTCTCCTGGACATCAGGAAACAGATccacctggagaggagaggagttataGACATACTAGATGTAACTACCCATGAGAAGTGAGGGTCACTACCCATGAGAAGTGAGGGTCGCTACCCATTAGAAGTGAGG
>TU2677761
CCCTAGTTAACACACAGGGTTCACACACGTCCCTACCTGTGAGTTGTCGTTGCAGGGTTCCAGTAGCATGCTGCTCTGAGCCGCGGAGGCTGAACTCTCTCTCTGAGGGAAGGCTGGGTTCTCCAGCAACATGTTACAGATACTGGACACAGACACTCGCAGGTTAAATACAGCGACACAGATATCAGAGAGTTACAGAATGctggtacacagagagagagagaaaactaaATAGCAGGAGTTttatattttagtaatttagctcTGATCTAGAacaaggtgagacaaccacagaCAACCACATTTCACAGTCATAGAGATAGTTGTAGTTCTAACAGATTGGGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTAACAGATTGGGATCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCGGGTCAGTGGTAGTCATGGAGATACTTGTAGTTCTAACAGATTGGGATCGTTCGGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCATTGGTCTGGATCAGTTCTGCTACATAGTTCTCCTGGACATCAGGAAACAGATccacctggagaggagaggagttataGACATACTAGATGTAACTACCCATGAGAAGTGAGGGTCACTACCCATGAGAAGTGAGGGTCGCTACCCATTAGAAGTGAGG
>TU2677762
CCCTAGTTAACACACAGGGTTCACACACGTCCCTACCTGTGAGTTGTCGTTGCAGGGTTCCAGTAGCATGCTGCTCTGAGCCGCGGAGGCTGAACTCTCTCTCTGAGGGAAGGCTGGGTTCTCCAGCAACATGTTACAGATACTGGACACAGACACTCGCAGGTTAAATACAGCGACACAGATATCAGAGAGTTACAGAATGctggtacacagagagagagagaaaactaaATAGCAGGAGTTttatattttagtaatttagctcTGATCTAGAacaaggtgagacaaccacagaCAACCACATTTCACAGTCATAGAGATAGTTGTAGTTCTAACAGATTGGGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTAACAGATTGGGATCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCGGGTCAGTGGTAGTCATGGAGATACTTGTAGTTCTAACAGATTGGGATCGTTCGGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCAGTGGTAGTCATGGAGATAGTTGTAGTTCTTACACATTGAGGTCTTTCAGGTCATTGGTCTGGATCAGTTCTGCTACATAGTTCTCCTGGACATCAGGAAACAGATccacctggagaggagaggagttataGACATACTAGATGTAACTACCCATGAGAAGTGAGGGTCACTACCCATGAGAAGTGAGGGTCGCTACCCATTAGAAGTGAGG

Function

NR:

description
E3 ubiquitin-protein ligase RNF216-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2677760 False 939 lncRNA 0.44 2 712066 713110
TU2677761 False 886 lncRNA 0.45 2 712066 713110
TU2677762 True 833 lncRNA 0.45 2 712066 713110

Neighbor

gene id symbol gene type direction distance location
LOC110511701 traf7 coding downstream 199594 446215 ~ 512472 (-)
prpsap2 LOC103393631 coding downstream 418746 247351 ~ 293320 (-)
LOC110511686 LOC106591320 coding downstream 593977 52434 ~ 118089 (-)
LOC118947117 NA coding downstream 663766 47623 ~ 51453 (-)
LOC110517482 fscn1 coding upstream 67656 780766 ~ 808870 (-)
LOC118947119 NA coding upstream 86053 799163 ~ 800016 (-)
LOC110516334 LOC106594246 coding upstream 142252 855362 ~ 958479 (-)
LOC110513313 slc29a4 coding upstream 260631 973741 ~ 1003184 (-)
LOC110518374 cpsf4 coding upstream 313635 1026745 ~ 1048179 (-)
G2339026 LOC106591863 non-coding downstream 77 710412 ~ 711989 (-)
G2339024 NA non-coding downstream 8245 703484 ~ 703821 (-)
G2339019 NA non-coding downstream 9742 692505 ~ 702324 (-)
G2339017 LOC106595364 non-coding downstream 30349 680731 ~ 681717 (-)
G2338757 NA non-coding downstream 37609 673690 ~ 674457 (-)
G2339072 NA non-coding upstream 44387 757497 ~ 760194 (-)
G2339075 NA non-coding upstream 50718 763828 ~ 764623 (-)
G2339078 NA non-coding upstream 75384 788494 ~ 789267 (-)
G2339063 NA non-coding upstream 100974 814084 ~ 815554 (-)
G2339086 NA non-coding upstream 106099 819209 ~ 822984 (-)
G2338752 NA other downstream 45969 663537 ~ 666097 (-)
G2338753 NA other downstream 47381 664228 ~ 664685 (-)
G2338725 NA other downstream 141688 569827 ~ 570378 (-)
G2339043 LOC102799139 other upstream 126073 839183 ~ 844104 (-)
G2339109 NA other upstream 227866 940976 ~ 941892 (-)
G2339060 NA other upstream 250039 963149 ~ 969154 (-)
G2339121 NA other upstream 284821 997931 ~ 1168624 (-)

Expression


Co-expression Network