G2339072


Basic Information

Item Value
gene id G2339072
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 757497 ~ 760194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2677831
CCTTAAGATAAGTTAAGTGTGTATAAAGGTCTGTGATAGGATGGACTACCTTAAGATAAGTTAAGTGTGTATAAAGGTCTGTGATAGGATGGACTACCTTAAGATAAGTTAAGTGTGTATAAAGGTCTGTGATAGGATGGACTACCTTAAGATAAGTTAAGTGTGTATAAAGGTCTGTGATAGGATGGACTACCTTAAGATAAGTTAAGTGTGTATAAAGGTCTGTGATAGGATGGACTACCTTAAGATAAGAGTATAAAGGTCTGTGATAGGATGGACTACCTTAAGATAAGAGTATAAAGGTCTGTGATAGGATGGACTACCTTAAGATAAGAGTATAAAGGTCTAGGATAGGATGGACTACCTTAAGATAAGATAAGTGTGTGGAACCACCAGACAGGACCAGAATGTGAAAACTAAAAAGTTTATTGAGCAGAAACAGCACTCAGAACAACATTATGCTGTAATCAAAAATATCTCTGGAACAGTagcaaggtcagaggtcagaggtcagcaccccccccccacccgaaacaaaacaaacgtaaAGAGTAGAAAGGAACAGCCAGCAGGGTTCGCTCTGCCATGATCACATCTCAGTCTATTAACTGTCTGGAGACACCTGGTACTAGATAACAGTctggaagaggaggacgagaaggggtctgtagaggaggagggttatagGGgtctgtagaggaggaggaggggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggaggggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggggggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggaggggttataggtgtctagtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggggggttataggtgtctgtagtagaggagggggggttataggtgtctagtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggggggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggaggggttataggtgtctagtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagcGAGGGGGGGGTCCATAGTGCATGGGCATGTTGACGTCTATATTGTTCAGGTTGTTGTTGACCTGGTTGAGGGGAGGGTGGTAGTTGAGGGGGGGCAGGTGGAGGAGCGGGGGCACGTAGGGGGCGGGGGGCAAGGGCTGGCGATGAGGCAGAATGACACGAGGAGGGACCAATAAGGGCGCTCGCACCGCCTGCGGAGGGGGGGCTGCTCGAGGTCGCTTAGCAACCACCACAGGTTCCGGGGGCGGGCCCACTCTCTTCCCTGAAGTctctgagagggagaaagagagagagagagagagagagagagaaagaaatgtcAGTTAGTCAGGGTGATAGCTGCTAGTCAGGGTGATAGCAGTTAGTCAGGGTGATAGCAGTTAGTCAGGGTGATAGCAGTTAGTCAGGGTGATAGCTGCTAGTCAGGGTGATAGCTGCTAGTCAGGGTGATAGCTGCTAGTCAGGGTGATAGCAGTTAGTCAGGGTGATAGCAGTTAGTCAGGGTGATAGCAGTTAGTCAGGGTGATAGCTGCTAGTCAGGGTGATAGCTGCTAGTCAGGGTGATAGTCAGGGTGATAGCAGTTAGTCAGGGTGATAGTCAGGGTGATAGTCAGGGTGATAGTCAGGGTGATAGCTGCTAGTCAGGGTGATAGCTGTTAGTCAGGGTGATAGCTGATAG
>TU2677825
CAGAAACAGCACTCAGAACAACATTATGCTGTAATCAAAAATATCTCTGGAACAGTagcaaggtcagaggtcagaggtcagcaccccccccccacccgaaacaaaacaaacgtaaAGAGTAGAAAGGAACAGCCAGCAGGGTTCGCTCTGCCATGATCACATCTCAGTCTATTAACTGTCTGGAGACACCTGGTACTAGATAACAGTctggaagaggaggacgagaaggggtctgtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaagaggaggaggggttataggtgtctgtagtagaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagcGAGGGGGGGGTCCATAGTGCATGGGCATGTTGACGTCTATATTGTTCAGGTTGTTGTTGACCTGGTTGAGGGGAGGGTGGTAGTTGAGGGGGGGCAGGTGGAGGAGCGGGGGCACGTAGGGGGCGGGGGGCAAGGGCTGGCGATGAGGCAGAATGACACGAGGAGGGACCAATAAGGGCGCTCGCACCGCCTGCGGAGGGGGGGCTGCTCGAGGTCGCTTAGCAACCACCACAGGTTCCGGGGGCGGGCCCACTCTCTTC
>TU2677827
CAGAAACAGCACTCAGAACAACATTATGCTGTAATCAAAAATATCTCTGGAACAGTagcaaggtcagaggtcagaggtcagcaccccccccccacccgaaacaaaacaaacgtaaAGAGTAGAAAGGAACAGCCAGCAGGGTTCGCTCTGCCATGATCACATCTCAGTCTATTAACTGTCTGGAGACACCTGGTACTAGATAACAGTctggaagaggaggacgagaaggggtctgtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaagaggaggaggggttataggtgtctgtagtagaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagcGAGGGGGGGGTCCATAGTGCATGGGCATGTTGACGTCTATATTGTTCAGGTTGTTGTTGACCTGGTTGAGGGGAGGGTGGTAGTTGAGGGGGGGCAGGTGGAGGAGCGGGGGCACGTAGGGGGCGGGGGGCAAGGGCTGGCGATGAGGCAGAATGACACGAGGAGGGACCAATAAGGGCGCTCGCACCGCCTGCGGAGGGGGGGCTGCTCGAGGTCGCTTAGCAACCACCACAGGTTCCGGGGGCGGGCCCACTCTCTTC
>TU2677828
CAGAAACAGCACTCAGAACAACATTATGCTGTAATCAAAAATATCTCTGGAACAGTagcaaggtcagaggtcagaggtcagcaccccccccccacccgaaacaaaacaaacgtaaAGAGTAGAAAGGAACAGCCAGCAGGGTTCGCTCTGCCATGATCACATCTCAGTCTATTAACTGTCTGGAGACACCTGGTACTAGATAACAGTctggaagaggaggacgagaaggggtctgtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaagaggaggaggggttataggtgtctgtagtagaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagcGAGGGGGGGGTCCATAGTGCATGGGCATGTTGACGTCTATATTGTTCAGGTTGTTGTTGACCTGGTTGAGGGGAGGGTGGTAGTTGAGGGGGGGCAGGTGGAGGAGCGGGGGCACGTAGGGGGCGGGGGGCAAGGGCTGGCGATGAGGCAGAATGACACGAGGAGGGACCAATAAGGGCGCTCGCACCGCCTGCGGAGGGGGGGCTGCTCGAGGTCGCTTAGCAACCACCACAGGTTCCGGGGGCGGGCCCACTCTCTTC
>TU2677829
CAGAAACAGCACTCAGAACAACATTATGCTGTAATCAAAAATATCTCTGGAACAGTagcaaggtcagaggtcagaggtcagcaccccccccccacccgaaacaaaacaaacgtaaAGAGTAGAAAGGAACAGCCAGCAGGGTTCGCTCTGCCATGATCACATCTCAGTCTATTAACTGTCTGGAGACACCTGGTACTAGATAACAGTctggaagaggaggacgagaaggggtctgtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggaggggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagcGAGGGGGGGGTCCATAGTGCATGGGCATGTTGACGTCTATATTGTTCAGGTTGTTGTTGACCTGGTTGAGGGGAGGGTGGTAGTTGAGGGGGGGCAGGTGGAGGAGCGGGGGCACGTAGGGGGCGGGGGGCAAGGGCTGGCGATGAGGCAGAATGACACGAGGAGGGACCAATAAGGGCGCTCGCACCGCCTGCGGAGGGGGGGCTGCTCGAGGTCGCTTAGCAACCACCACAGGTTCCGGGGGCGGGCCCACTCTCTTC
>TU2677830
CAGAAACAGCACTCAGAACAACATTATGCTGTAATCAAAAATATCTCTGGAACAGTagcaaggtcagaggtcagaggtcagcaccccccccccacccgaaacaaaacaaacgtaaAGAGTAGAAAGGAACAGCCAGCAGGGTTCGCTCTGCCATGATCACATCTCAGTCTATTAACTGTCTGGAGACACCTGGTACTAGATAACAGTctggaagaggaggacgagaaggggtctgtagaggaggagggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggagggggggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagaggaggggggttataggtgtctgtagtagaggaggaggggttataggtgtctgtagtagaggaggagggttataggtgtctgtagtagaggaggaggagggttataggtgtctgtagtagcGAGGGGGGGGTCCATAGTGCATGGGCATGTTGACGTCTATATTGTTCAGGTTGTTGTTGACCTGGTTGAGGGGAGGGTGGTAGTTGAGGGGGGGCAGGTGGAGGAGCGGGGGCACGTAGGGGGCGGGGGGCAAGGGCTGGCGATGAGGCAGAATGACACGAGGAGGGACCAATAAGGGCGCTCGCACCGCCTGCGGAGGGGGGGCTGCTCGAGGTCGCTTAGCAACCACCACAGGTTCCGGGGGCGGGCCCACTCTCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2677831 False 2329 lncRNA 0.49 4 757497 760194
TU2677825 False 885 lncRNA 0.54 3 757915 759761
TU2677827 False 856 lncRNA 0.54 3 757915 759761
TU2677828 False 796 lncRNA 0.54 3 757915 759761
TU2677829 False 918 lncRNA 0.54 4 757915 759761
TU2677830 True 796 lncRNA 0.54 4 757915 759761

Neighbor

gene id symbol gene type direction distance location
LOC110511701 traf7 coding downstream 245025 446215 ~ 512472 (-)
prpsap2 LOC103393631 coding downstream 464177 247351 ~ 293320 (-)
LOC110511686 LOC106591320 coding downstream 639408 52434 ~ 118089 (-)
LOC118947117 NA coding downstream 709197 47623 ~ 51453 (-)
LOC110517482 fscn1 coding upstream 20572 780766 ~ 808870 (-)
LOC118947119 NA coding upstream 38969 799163 ~ 800016 (-)
LOC110516334 LOC106594246 coding upstream 95168 855362 ~ 958479 (-)
LOC110513313 slc29a4 coding upstream 213547 973741 ~ 1003184 (-)
LOC110518374 cpsf4 coding upstream 266551 1026745 ~ 1048179 (-)
G2339027 NA non-coding downstream 44387 712066 ~ 713110 (-)
G2339026 LOC106591863 non-coding downstream 45508 710412 ~ 711989 (-)
G2339024 NA non-coding downstream 53676 703484 ~ 703821 (-)
G2339019 NA non-coding downstream 55173 692505 ~ 702324 (-)
G2339017 LOC106595364 non-coding downstream 75780 680731 ~ 681717 (-)
G2339075 NA non-coding upstream 3634 763828 ~ 764623 (-)
G2339078 NA non-coding upstream 28300 788494 ~ 789267 (-)
G2339063 NA non-coding upstream 53890 814084 ~ 815554 (-)
G2339086 NA non-coding upstream 59015 819209 ~ 822984 (-)
G2339043 LOC102799139 non-coding upstream 78989 839183 ~ 844104 (-)
G2338752 NA other downstream 91400 663537 ~ 666097 (-)
G2338753 NA other downstream 92812 664228 ~ 664685 (-)
G2338725 NA other downstream 187119 569827 ~ 570378 (-)
G2339109 NA other upstream 180782 940976 ~ 941892 (-)
G2339060 NA other upstream 202955 963149 ~ 969154 (-)
G2339121 NA other upstream 237737 997931 ~ 1168624 (-)

Expression


Co-expression Network