G2339050 (atp5j2)


Basic Information

Item Value
gene id G2339050
gene name atp5j2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1021952 ~ 1024681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2677803
TTTATTCTTGGTCACAacggtggtattatacagacagCTGGAGCtagggggtcagaggtcaggcttTTGCCCTGCTGGGTCAGGAGAGGAGGGGCTTTAGTGGTACTTCCTCCAGCGGTCGTGCtTGAGGTGGTCGTACTCCCACATGTAACTGAGGGCCACGTATCCAACCAGCAGCATGGCCACGCCTCCAATACCTCCCTTCTTCACATTGATGTACTTGTTGTAATATCTATCATGgcCATTGCGGATGCTGGCGAGGACTCCGTTAGGAGTGAAGTCCCTCTTGCCCAACCAGGAGCCCAACTCTCCCAGCTTCACATCCATCAGACGCTTCTCACCCAAGGGAACTATTCTGTCCGCCATCTTGCTCGCTGGA

Function

symbol description
atp5j2 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and skeleton. Orthologous to human ATP5MF (ATP synthase membrane subunit f).

NR:

description
ATP synthase subunit f, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2677803 True 379 lncRNA 0.54 4 1021952 1024681

Neighbor

gene id symbol gene type direction distance location
LOC110513313 slc29a4 coding downstream 18768 973741 ~ 1003184 (-)
LOC110516334 LOC106594246 coding downstream 63473 855362 ~ 958479 (-)
LOC110517482 fscn1 coding downstream 213082 780766 ~ 808870 (-)
LOC118947119 NA coding downstream 221936 799163 ~ 800016 (-)
LOC110511701 traf7 coding downstream 509480 446215 ~ 512472 (-)
LOC110518374 cpsf4 coding upstream 2064 1026745 ~ 1048179 (-)
LOC118947123 NA coding upstream 59291 1083692 ~ 1086303 (-)
LOC110516784 smcr8 coding upstream 133371 1158052 ~ 1183417 (-)
LOC110516509 llgl1 coding upstream 301987 1326668 ~ 1417783 (-)
LOC118947127 LOC106594823 coding upstream 411818 1436499 ~ 1488403 (-)
G2339122 NA non-coding downstream 10269 1010055 ~ 1011683 (-)
G2339123 NA non-coding downstream 11322 1010271 ~ 1010630 (-)
G2339111 NA non-coding downstream 77783 943375 ~ 944169 (-)
G2339110 NA non-coding downstream 78955 942143 ~ 942997 (-)
G2339057 NA non-coding downstream 98345 893288 ~ 923607 (-)
G2339133 NA non-coding upstream 13119 1037800 ~ 1040786 (-)
G2339136 NA non-coding upstream 21024 1045705 ~ 1046314 (-)
G2339139 NA non-coding upstream 48600 1073281 ~ 1073949 (-)
G2339146 NA non-coding upstream 51027 1075708 ~ 1078956 (-)
G2339121 NA other downstream 22095 997931 ~ 1168624 (-)
G2339060 NA other downstream 52798 963149 ~ 969154 (-)
G2339109 NA other downstream 80060 940976 ~ 941892 (-)
G2339043 LOC102799139 other downstream 177848 839183 ~ 844104 (-)
G2339156 NA other upstream 83051 1107732 ~ 1122639 (-)
G2339202 NA other upstream 210523 1235204 ~ 1235588 (-)
G2339205 NA other upstream 217393 1242074 ~ 1243382 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018522 NA misc CM030135.1 CM030135.1 13253085 ~ 13257250 (-)