G2339172


Basic Information

Item Value
gene id G2339172
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493664.1
NCBI id JAAXML020000507.1
chromosome length 1504970
location 1145517 ~ 1149117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2677988
TGTGTTCCACATCCTTGAGTTTTATTTGTCTTGGGTTTCATTACATTAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTTAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCTGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAGCAGAGAAGGAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAAAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGGTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGTAGAGGACAACAGAGAAGGAAACAGTCAGTCAAACCGGTAagacagaggacagcagagaaggAGACAGTCAATATTCAAGAGGTATGATGAAGTGGCAGGTGACATGAAAACATTTCATCTTGAAAACAGGTCTTTAAAGTTCCTCCAGACCAGGCATGGGGAACCCCCCAGCGAAAGCCTCCACCTCCCCCCTCAGCTCTGCTACCCTCTCCTGGTGCTTCCCCTCCCCTGCCAGGGCCTCCTTAAACTCCTTCAGGGTGGCCTTGGTCTGCTAGCTGGACATCTAGGGTCAGCACTATGTCTATAGACACAGAGgtcaggggttaagggTCACCTCTGTGGATGAACTCTGCGACCTTCCTGAAGTCGTCTTCAACCATTCCTCTGGAGGTCAGAGCAGGAGAGCCGAACCTCAGACCGCTGGGACGCAACGCACTCttatcacctacacacacacaaacacacacacacattacgtaTATACACGCATATACAGACAACTGGGACACAGAGCACTCTCACCACCTACAGAGGACTGTGTCTGTTACCATATACAGACAACTGGGACACAGAGCACTCTCACCACCTACAGAGGACTGTGTCTGTTAGTTACCTGGACAGGTGTTCTTGTTGCAGGCGATGGCAGCAGCTTCTAGAACCTTCTCAGCTCGTCCTCCGTCCGTCCCGTTAGGCCTCAGGTCCAGTAAGATCAGATGGTTATCAGAACCCCCTGGAGGACATTAACACAACCATacaacaacattaacacaaccctacaacaacattaacacaaccctacagcaacattaacacaaccatacaacaacattaacacaaccctaCAACAACATACagcaacattaacacaaccctacaacaacattaacacaaccctacagcaacattaacacaaccctacagcaacattaacacaaccatacaacaacattaacacaaccctacagcaacattaacacaaccatacaacaacattaacacaaccctacaacaacattaacacaaccctacagcaacattaacacaaccctacagcaacattaacacaaccctacagcaacattaacacaaccctaCAGCAACATTAACACAAGCCTACAACAACAT
>TU2677986
TGTGTTCCACATCCTTGAGTTTTATTTGTCTTGGGTTTCATTACATTAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTTAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCTGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAGCAGAGAAGGAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAAAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTTAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCTGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAGCAGAGAAGGAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGAGGACACACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACATTCAGTCAAACCGGTAagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTagacagaggacagcagagaaggAAACATTCAGTCAAACCGGTAagacagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGTAGAGGACAACAGAGAAGGAAACAGTCAGTCAAACCGGTAagacagaggacagcagagaaggAGACAGTCAATATTCAAGAGGTATGATGAAGTGGCAGGTGACATGAAAACATTTCATCTTGAAAACAGGTCTTTAAAGTTCCTCCAGACCAGGCATGGGGAACCCCCCAGCGAAAGCCTCCACCTCCCCCCTCAGCTCTGCTACCCTCTCCTGGTGCTTCCCCTCCCCTGCCAGGGCCTCCTTAAACTCCTTCAGGGTCGCCTTGGGCTGCAGAGAGGCCTGGATGTCCAGGGTCATCT
>TU2677987
TGTGTTCCACATCCTTGAGTTTTATTTGTCTTGGGTTTCATTACATTAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGAAGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGGTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTTAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCTGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACCGGTAAGGCAGGGGACAAACCAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAGCAGAGAAGGAAACAGTCAGTCAAACAAACCGTTAAGGCAGAGACGGAAACACAGTCAGTCAAACTGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTTaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCGTTAAGGCAAAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGCAGGGGACAAACCAGTCAGTCAAACCGTTAaggcagaggacagcagagaaggAAACAGTCAGTCAAACAAACCCTTAAGGCAGAGGACAAACCAGTCAGTCAAACCGTTAAGGTAGAGGACAACAGAGAAGGAAACAGTCAGTCAAACCGGTAagacagaggacagcagagaaggAGACAGTCAATATTCAAGAGGTATGATGAAGTGGCAGGTGACATGAAAACATTTCATCTTGAAAACAGGTCTTTAAAGTTCCTCCAGACCAGGCATGGGGAACCCCCCAGCGAAAGCCTCCACCTCCCCCCTCAGCTCTGCTACCCTCTCCTGGTGCTTCCCCTCCCCTGCCAGGGCCTCCTTAAACTCCTTCAGGGTCGCCTTGGGCTGCAGAGAGGCCTGGATGTCCAGGGTCATCT

Function

NR:

description
PREDICTED: serine hydroxymethyltransferase, cytosolic

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2677988 False 2127 lncRNA 0.47 5 1145517 1149117
TU2677986 False 2327 lncRNA 0.49 2 1146643 1149117
TU2677987 True 1269 lncRNA 0.49 2 1146643 1149117
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Neighbor

gene id symbol gene type direction distance location
LOC118947123 NA coding downstream 60734 1083692 ~ 1086303 (-)
LOC110518374 cpsf4 coding downstream 97338 1026745 ~ 1048179 (-)
LOC110513313 slc29a4 coding downstream 142333 973741 ~ 1003184 (-)
LOC110516334 LOC106594246 coding downstream 187038 855362 ~ 958479 (-)
LOC118947119 NA coding downstream 345501 799163 ~ 800016 (-)
LOC110516784 smcr8 coding upstream 8935 1158052 ~ 1183417 (-)
LOC110516509 llgl1 coding upstream 177551 1326668 ~ 1417783 (-)
LOC118947127 LOC106594823 coding upstream 287382 1436499 ~ 1488403 (-)
G2339168 NA non-coding downstream 7166 1137394 ~ 1138351 (-)
G2339167 NA non-coding downstream 8474 1136395 ~ 1137043 (-)
G2339155 LOC106594472 non-coding downstream 10763 1134422 ~ 1134754 (-)
G2339158 NA non-coding downstream 24395 1111179 ~ 1121122 (-)
G2339157 NA non-coding downstream 40188 1097497 ~ 1105329 (-)
G2339176 NA non-coding upstream 1696 1150813 ~ 1155809 (-)
G2339182 NA non-coding upstream 16694 1165811 ~ 1169006 (-)
G2339184 NA non-coding upstream 37179 1186296 ~ 1197554 (-)
G2339185 NA non-coding upstream 46667 1195784 ~ 1196260 (-)
G2339156 NA other downstream 22878 1107732 ~ 1122639 (-)
G2339121 NA other downstream 145660 997931 ~ 1168624 (-)
G2339060 NA other downstream 176363 963149 ~ 969154 (-)
G2339202 NA other upstream 86087 1235204 ~ 1235588 (-)
G2339205 NA other upstream 92957 1242074 ~ 1243382 (-)

Expression

G2339172 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 150.
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G2339172 Expression in each Bioproject

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G2339172 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network