LOC118947133


Basic Information

Item Value
gene id LOC118947133
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 687696 ~ 688516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041787.1
CAGGTTGGGTTGTAGCTGTAGAAGTCAGTCCCGGTTGGGTTGTAACTGTAGAAGTCAGTCCCGGTCCCGGTCAGGTTGGGTTGTAACTGTAGAAGTCAGTCCCGGTTCCGGTCAGGTCGGGTAATAGCTGTAGAAGTCAGTCCCAGTCCCGGTCAGGTTGGGTTGTAACTGTAGAAGTCAGACCCGGTCCGGTTGTAGAAGTCAGTCCCGGTCCTGGTCAGGTTGGGAGGGGTGTCAGTGCTGTTACTCTGAAGGTATTGCACTTGTCCCGGCCTGTTTAGGATTGAGGAGATGGTGCTCCTACTCTTTAAACCTGCTAAAGCAGTTGGTTGCGTGTTTGAAATGATTGAATGAAACATATATTTACCAAAAAATGAGACTTGTATGTTTTCTGTCCCATGATTCTGTTTTTCTAGATTTGTCTTTAATTAATGAAGAGGTAGTTTTCTAAATTGTAGATGGATTGTCGGAGCTTAAATGTGTCCGTCCATATGGTGAGTACTTGTTTCATGCTGTGGTTTTGTTTCAAATAAAGTTTCCATGTAAATGta
>TU2678913
TCCCGGTTGGGTTGTAACTGTAGAAGTCAGTCCCGGTCCCGGTCAGGTTGGGTTGTAACTGTAGAAGTCAGTCCCGGTTCCGGTCAGGTCGGGTAATAGCTGTAGAAGTCAGTCCCAGTCCTGGTCAGGTTGGGTTGTAACTGTAGAAGTCAGTCCCGGTCCGGTTGTAGAAGTCAGTCCCGGTCCTGGTCAGGTTGGGAGGGGTGTCAGTGCTGTTACTCTGAAGGTATTGCACTTGTCCCGGCCTGTTTAGGATTGAGGAGATGGTGCTCCTACTCTTTAAACCTGCTAAAGCAGTTGGTTGCGTGTTTGAAATGATTGAATGAAACATATATTTACCAAAAAATGAGACTTGTATGTTTTCTGTCCCATGATTCTGTTTTTCTAGATTTGTCTTTAATTAATGAAGAGGTAGTTTTCTAAATTGTAGATGGATTGTCGGAGCTTAAATGTGTCCGTCCATATGGTGAGTACTTGTTTCATGCTGTGGTTTTGTTTCAAATAAAGTTTCCATGTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041787.1 False 551 mRNA 0.45 2 687696 688516
TU2678913 True 520 lncRNA 0.44 2 687699 688488

Neighbor

gene id symbol gene type direction distance location
gpc5a gpc5 coding downstream 10841 369452 ~ 676855 (-)
LOC118947134 NA coding upstream 18034 706550 ~ 724423 (-)
LOC110495337 cenpq coding upstream 86166 774682 ~ 796646 (-)
mrpl16 mrpl16 coding upstream 109778 798294 ~ 806925 (-)
txnl4b txnl4b coding upstream 130100 818616 ~ 832987 (-)
pros1 pros1 coding upstream 136596 825112 ~ 860180 (-)
G2339796 NA non-coding downstream 5555 680848 ~ 682141 (-)
G2339792 NA non-coding downstream 7196 679090 ~ 680500 (-)
G2339790 NA non-coding downstream 9046 678319 ~ 678650 (-)
G2339785 NA non-coding downstream 23286 663773 ~ 664410 (-)
G2339775 NA non-coding downstream 44106 642303 ~ 643590 (-)
G2339806 NA non-coding upstream 443 688959 ~ 690289 (-)
G2339821 NA non-coding upstream 15429 703945 ~ 704442 (-)
G2339841 NA non-coding upstream 32724 721240 ~ 722512 (-)
G2339845 NA non-coding upstream 43320 731836 ~ 732286 (-)
G2339846 NA non-coding upstream 44291 732807 ~ 733119 (-)
G2339563 NA other downstream 647018 40278 ~ 40678 (-)
ercc5 ercc5 other upstream 470443 1158959 ~ 1201980 (-)
LOC118947136 LOC106575928 other upstream 672084 1360510 ~ 1377938 (-)
G2340349 NA other upstream 701020 1389536 ~ 1392049 (-)
G2340359 NA other upstream 727240 1415756 ~ 1419633 (-)

Expression

LOC118947133 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC118947133 Expression in each Bioproject

Bar chart with 20 bars.
LOC118947133 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location