LOC110514508 (LOC106595224)


Basic Information

Item Value
gene id LOC110514508
gene name LOC106595224
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 114200 ~ 116716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972396.1
atgAGGACTATGATGAggacgatgatgaggaggaatACGACCCCGCCGAGCGCGAGCCCTCCGCCTACGACGCCTCGCAGTCCTTGTTTGAGCGCGGCTCAGGTCCTGGAACAGATATCCTCCAGTGTCGACCAAGAAGACGAGGAAGACTACATGGAATCCGAAGAGGAGGACGTTTCGGAAGATGAAGACGGTGAGGAATACAACCCCGAGCGTGATGcggacgacgacgacgacgactcGGCCTCACGGTCGTGCTCCTCTTcggaggaagagcgagagggagagcgagagggagacacgGCCGCTGCccgagagcgagacacagccagagagccagagcgagacagagaggacgCGGCGGCAGCCGCCCGAGCCCAAAGGGAGACGTTGCTGTCAAAGAACGGCAAAATCAAATGGTCCTCCGTGGCCTATCGCGGCCCGGACCGGCCCCGCGCCATCCGCCGCCCCGGCTCCGTCGTGACGCCGGGCCCCACGGCCTACGCCGCGTCGCGAGCGCTCGACATCGAGTCCGCCTTCCGGCTGTTTGTCACACCGGCGATAGAAAGGATCATTGTGGACATGACAAATCTGCAGGGGGTGAGAAAATACGGCGACGGCTGGCGACCCATGGACTCCACCGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCCGGCGTCTACAGGTCCCGAGGCGAGGCCGCGGCCAGCCTGTGGGACGCCGAGAGCGGCAGGACCGTGTTCCGCGCCACCATGCCGCTCAAGGTGTTTCACAAGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACCGACAGACTGGCGGCCATAAGAGAGGTATGGGACCTGTGGGAGGAGCGGCTGCCGGCCCTCTACAACCCGGGGCCCGACCTGACGGTGGACGAACAACTGGTCCCGTTCAGAGGACGCTGTCCTTTCCGACAGTACATTCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtctacacCGGCAAGGCGGCCGGCGGAGGCCCCGAGAAGAACCAGGGCGCCCGCGTCGTCCTCGATCTGACCGAGGGACTGCCGGGCGGTCACAACGTCAcgtgtgacaatttcttcacctccTACGAACTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCCAGTCAAAGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTAGTGTCCTACCTGGCAAAGAGAAATAAGAACGTGCTACTTCTGAGCACGCTGCACGCGGAGCCCGACGTTAGCGATCGCCGCGACCGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTCGGGACCTACAGCTGCAGACGGATGAccgcccgctggcccctggtcatcttccacaaCATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGGaagcggaacaagaggagggtgttcctggagcagctcggAAAGGCACTCGTGAAGCCCTTGATACAAAGAAGGCAGCGGCTCCCCCGCACCCAAGCCGCGTCCGCACTTGTCAAAGTCCTACAGAGTGCCACCGCCGAGGCTCGTCCGCCAGCCCGGGAGCAAGCCGCTGGCCCGGCCGCCGCCGCCCCAGCCGCCCCGCCGGTGGCGAGTAAGAGGAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACGCCAAGACCTACACCGCGTGCTGCAGGTGTaacaaatacatctgcaaaggctGTTCACACGCATACTGTCAAACTTGTGCCCACTGGGCCTTTAGCCAAGACGGGACAGGGTGA
>TU2679989
CTAATATTgtcaggaagaagaagaagaaggaagaagaaggaagaagaagaagacgaggaCAACGACGAGGAGGAATACGACCCCGCCGAGCGTGAGCCCTCCGCCTACGACTGTAAGCCGGCCGTACAGAGGCTACTAATATTgtcaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcagaagaagatgAGGACTATGATGAggacgatgatgaggaggaatACGACCCCGCCGAGCGCGAGCCCTCCGCCTACGACGCCTCGCAGTCCTTGTTTGAGCGCGGCTCAGGTCCTGGAACAGATATCCTCCAGTGTCGACCAAGAAGACGAGGAAGACTACATGGAATCCGAAGAGGAGGACGTTTCGGAAGATGAAGACGGTGAGGAATACAACCCCGAGCGTGATGcggacgacgacgacgacgactcGGCCTCACGGTCGTGCTCCTCTTcggaggaagagcgagagggagagcgagagggagacacgGCCGCTGCccgagagcgagacacagccagagagcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972396.1 False 1968 mRNA 0.63 2 114200 116504
TU2679989 True 550 TUCP 0.55 1 116167 116716

Neighbor

gene id symbol gene type direction distance location
trnaa-cgc-21 NA coding downstream 899 113230 ~ 113301 (-)
trnat-ugu-59 NA coding downstream 1362 112767 ~ 112838 (-)
trnaa-ugc-228 NA coding downstream 2936 111193 ~ 111264 (-)
trnat-ugu-58 NA coding downstream 3399 110730 ~ 110801 (-)
trnaa-ugc-227 NA coding downstream 4969 109160 ~ 109231 (-)
LOC118947139 NA coding upstream 113271 229775 ~ 233910 (-)
LOC118947148 NA coding upstream 225998 342502 ~ 353584 (-)
LOC118947150 LOC106599077 coding upstream 245428 361932 ~ 363177 (-)
trnaa-cgc-22 NA coding upstream 289221 405725 ~ 405796 (-)
trnat-ugu-71 NA coding upstream 290696 406850 ~ 407547 (-)
G2340432 NA non-coding downstream 40064 73281 ~ 74136 (-)
G2340415 NA non-coding downstream 54931 56226 ~ 59269 (-)
G2340430 NA non-coding downstream 58108 55867 ~ 56092 (-)
G2340418 NA non-coding downstream 63009 48157 ~ 51191 (-)
G2340410 NA non-coding downstream 75596 29438 ~ 38604 (-)
G2340455 NA non-coding upstream 68846 185350 ~ 185775 (-)
G2340457 NA non-coding upstream 70260 186764 ~ 187083 (-)
G2340479 NA non-coding upstream 188497 305001 ~ 305334 (-)
G2340518 NA non-coding upstream 238952 355456 ~ 355819 (-)
G2340407 NA other downstream 51062 62414 ~ 63138 (-)
G2340905 NA other upstream 690386 806890 ~ 814655 (-)
G2340951 NA other upstream 762305 878809 ~ 929132 (-)
G2341053 NA other upstream 1042094 1158598 ~ 1164054 (-)

Expression


Co-expression Network