XLOC_004235


Basic Information

Item Value
gene id XLOC_004235
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33992033 ~ 33993147 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008482
AAACATTTTCATGCACGTGCATAAGCAGgaagaattttattattatatatatatttttaaagatttgttaCTGTTATGGAGTCTGTCTTACATAATATCTTTTCAAAAACCATTACTTCTCTTCTCAAATGTTTAAAGTCCATCCATTCTACCTTTAGTACATCAGTAgtagCTATGTGTTGGATGGTAGTGATCCAGTATTGTAAGATGATAAACACTTTTATGGACATGTAAAAGCAGGCAGGTTTTTTTTCCTCAAGGATTTGTTAGTGCCTTACTCatatcttttaaaaaacattacttCTCTTCTCAAATGTATATGAAGTGCAACCTAGAATGTATTGTATGTTGTTAAGGTCATTTGTGGTCAGGGATTCTGTAGATTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008482 True 388 lncRNA 0.32 2 33992033 33993147

Neighbor

gene id symbol gene type direction distance location
XLOC_004234 CR925698.1 coding downstream 25761 33966158 ~ 33966272 (-)
XLOC_004233 col6a2 coding downstream 31715 33921358 ~ 33960318 (-)
XLOC_004232 phka2 coding downstream 72724 33870357 ~ 33919309 (-)
XLOC_004231 si:ch211-227n13.3 coding downstream 123125 33861177 ~ 33868908 (-)
XLOC_004230 nxph2b coding downstream 134122 33846440 ~ 33857911 (-)
XLOC_004236 col6a1 coding upstream 3379 33996526 ~ 34065718 (-)
XLOC_004237 tdo2b coding upstream 91385 34084532 ~ 34097437 (-)
XLOC_004238 atp13a3 coding upstream 123587 34116734 ~ 34147205 (-)
XLOC_004239 atp13a3 coding upstream 158030 34151177 ~ 34151487 (-)
XLOC_004240 atp13a3 coding upstream 161446 34154593 ~ 34188346 (-)
XLOC_004063 CR854846.1 misc downstream 17864355 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21300342 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21370266 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21400737 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21478771 12512966 ~ 12513262 (-)
XLOC_004229 NA non-coding downstream 303084 33676834 ~ 33688949 (-)
XLOC_004227 NA non-coding downstream 590557 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 non-coding downstream 793429 33190658 ~ 33198604 (-)
XLOC_004225 NA non-coding downstream 812238 33163180 ~ 33179795 (-)
XLOC_004243 FO681390.1 non-coding upstream 256309 34249456 ~ 34255220 (-)
XLOC_004244 NA non-coding upstream 322378 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 non-coding upstream 362397 34355544 ~ 34355662 (-)
XLOC_004247 BX548160.2 non-coding upstream 473248 34466395 ~ 34466513 (-)
XLOC_004249 NA non-coding upstream 557700 34550847 ~ 34577106 (-)

Expression


Co-expression Network