G2340897


Basic Information

Item Value
gene id G2340897
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 811254 ~ 819626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2680636
GATGTGAAATTTAAGCCCCCCTTTTTGACACCCACTAGGGTGTCACTCATTATCCCTTATTTCAGCAGTCATAGCATTTCATGAAAAGAAAAAACAAAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCAAAATGGCCGCGAACACCGAAATGGAGACCAAAATGGAGGAGACCAGGGTTTTATATTTACCAAAGGCACTCATCCAGGAGTCCCACATTGAGGTATCAATCCCAGAATGAGATTTCATTTTACCATTAAGAGTCCTCAAACCTTCTAGGGCTACGGTCAAGCTACCATCGGAGGCTGTGTTATTAGGGATGAAAGTACAACACTGTTCACCAAACATAGTGCAAGCTCCACCTTTCTCTGCCAGTAGCATATCCACTGCAATGCGATTCTGGAATGTATTCTATCCACATTTTTATTAACAGTGCACCACCAACAAATGGAGGACTCAAACCCAGCTGCCACCTGATCCACCAACTTGTACTCGTCAGGAACTCCCCTTGGGACTCCAATGGCGTCTATGTACGTCGGATCACCACTAGATGGGGTGGTGGCACGCCTGGAACGTCCCCTCCAATATTCAGGGTTCACCCTCTGGACCCTAAGGATGAGGTCTCCAGCCTCTGTAGGGTAGATAGAAACAGGCAAAAGGAGAGTAACAAGTGCACAGCTTCCAGTAGTATTGGAGGGTAATTTATCAAACAGGACAGTGttgccacaccaccaccacacatctGCTCTGGATATTGGCCTGAAACTCCCAACAATGTTGATTGTATCCAGACACCAATTCCCAGGAACCTGTCCCACATTAGTACCGCCTCCCGTCATTTTGACACAGGTGAAATGTGCCCTGGCAACCTTGTTGGAAAACAATGGTTTCCTAGCAGTAGATTTAGTCATGGGATAGACAGCATCCCAGGCAGAGCAATTACAACTGGGGTTATCCGTAGTCATTAATGGGATTAAACATGTTAGAGTCACATCTGTAACAGACTTCTTAAAACACGGTATGAtgcaagcagcacaacacatcaataataaAAATACAAGAATTAGGGTCAGAAATCCAGTAACCACCATACCAGTGTACTTACCAAACCAGGCTCCCAACCAAAAGAACAGTCCAGACTCCTCCACCCCCGCCATGGTCCTCATCTCAGCAGATAGTGCACCAAGCCCATTAAAGGCCTTAGCTATACCACCATCTGGAGTGGTGTTATTAGGAATATACGTGCAACATTGTTCACCGAACATCTTGCAGACTGTCTGGCAACCCTAGATGTGGCCTCAAGctgttcagacagaccagtgaGTGCATCACGGGGGTAATTCACAAAACGCTGTTGATTATAGTAGATATAACTGATCCATGCAGTCTGTCTAGCATCCACTATGGCTGGACCTATAATAGGTAGCAAGTGCCAGAGTCCATCATTCCTACCCAAGGCCTGAAACTCATGAGGAACCCCCATTGGCACTCCCAACAGGTTAGTGTGTATGTCAACTACATCCTCTGTCCATGGAGCACTACGTCTATGTCTTCCATGGGATGGAATGTTTTCA
>TU2680634
GATGTGAAATTTAAGCCCCCCTTTTTGACACCCACTAGGGTGTCACTCATTATCCCTTATTTCAGCAGTCATAGCATTTCATGAAAAGAAAAAACAAAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCAAAATGGCCGCGAACACCGAAATGGAGACCAAAATGGAGGAGACCAGGGTTTTATATTTACC
>TU2680635
GATGTGAAATTTAAGCCCCCCTTTTTGACACCCACTAGGGTGTCACTCATTATCCCTTATTTCAGCAGTCATAGCATTTCATGAAAAGAAAAAACAAAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCATTTCATGAAAAGAAAAAACAAAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCAAAATGGCCGCGAACACCGAAATGGAGACCAAAATGGAGGAGACCAGGGTTTTATATTTACC
>TU2680637
GATGTGAAATTTAAGCCCCCCTTTTTGACACCCACTAGGGTGTCACTCATTATCCCTTATTTCAGCAGTCATAGCATTTCATGAAAAGAAAAAACAAAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCTAGTAGGCACTCTCAACCTCATCCTCAAATTCGGGCAGGTCATTAGCAAGCAGAGGAAACATCTGGGAAAGGGGGGAAGGGTCAATAGCTCTAGAGATAACCCTAGTGGTAAGGGAACGGATACATGGAATGCAACAGCATCCACAGAGAACCAAAATGGCCGCGAACACCGAAATGGAGACCAAAATGGAGGAGACCAGGGTTTTATATTTACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2680636 False 1698 lncRNA 0.46 2 811254 819626
TU2680634 False 316 lncRNA 0.45 2 812636 819626
TU2680635 False 431 lncRNA 0.45 2 812636 819626
TU2680637 True 469 lncRNA 0.46 2 812636 819626

Neighbor

gene id symbol gene type direction distance location
trnar-ucg-75 NA coding downstream 135824 675358 ~ 675430 (-)
trnar-ucg-74 NA coding downstream 137988 673194 ~ 673266 (-)
trnar-ucg-73 NA coding downstream 139776 671406 ~ 671478 (-)
trnar-ucg-72 NA coding downstream 140845 670337 ~ 670409 (-)
trnar-ucg-71 NA coding downstream 141195 669987 ~ 670059 (-)
LOC118947141 LOC106595224 coding upstream 822 820448 ~ 824848 (-)
LOC118947142 LOC106596281 coding upstream 9836 829462 ~ 837281 (-)
LOC118947146 NA coding upstream 29582 849208 ~ 851265 (-)
LOC118947149 LOC106581842 coding upstream 35347 854973 ~ 857555 (-)
trnat-ugu-110 NA coding upstream 69351 888977 ~ 889048 (-)
G2340923 NA non-coding downstream 6875 799794 ~ 804379 (-)
G2340925 NA non-coding downstream 18620 788819 ~ 792634 (-)
G2340901 NA non-coding downstream 35166 767980 ~ 776088 (-)
G2340894 NA non-coding downstream 110984 693757 ~ 700270 (-)
G2340875 NA non-coding downstream 189179 619307 ~ 622075 (-)
G2340949 NA non-coding upstream 56406 876032 ~ 992003 (-)
G2340968 NA non-coding upstream 97379 917005 ~ 921098 (-)
G2340974 NA non-coding upstream 113865 933491 ~ 935264 (-)
G2341006 NA non-coding upstream 186297 1005923 ~ 1040396 (-)
G2341021 NA non-coding upstream 239179 1058805 ~ 1115633 (-)
LOC110514508 LOC106595224 other downstream 694538 114200 ~ 116716 (-)
G2340407 NA other downstream 748116 62414 ~ 63138 (-)
G2340951 NA other upstream 59183 878809 ~ 929132 (-)
G2341053 NA other upstream 338972 1158598 ~ 1164054 (-)

Expression


Co-expression Network