G2341006


Basic Information

Item Value
gene id G2341006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 1005923 ~ 1040396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2680773
gacccctctgaatacttgcagacattttcattttactcactttttgtctcttccacaatgttattcctcactcctacagtgtccatcacaattacatgcacatggacaattatgcaaattaggtgctgacatcatttagcaacttctagcgacttttaggacagccaatagctactttccttactgaggtgttggcaacactgctaactttaaacatcggctatctgagcagctaactgatcgctgaagctgtacaaagcctttctgtaaatagcccatccaatctacctacctcatccccatattgttttaatatactttctgctctttgcacacctgtatttctacttgcacatcatcatctgctcatctatcactccagtgttaatttgctaaattgtaaatacttcgatactatggcctatttattgccttaccaccatttgcacgcactgtatatagactttcttttttttcttctattgtgttattgactgtacgcttgtttattccatctgtaactctgtgttgttgtttgtgtagcgctgctttgctttatcttggccaggtcgcagttgaatatgaaaacttgttctcaactagcttacctggttaattataggtgaaatttaaaaaaaataagaaacatttttttctttcccagaaaggggatgtagctcagtggtagagggcatgctttgcatgtatgaggtcctgggttcaatccccagcttctccattaaaatttttgcaatggcccatctcctactttccagaatgttgaaattctcagcaggaaacagagatgtgctaaataatttgctcttgtaatctgaagaacatgtgttcaatccctgttcgtacatttatggaacagaagtggcatggttgccaacttcaattgcatcattttcaaaaactgaagttcatgggttagatgactgtccatacttgcttgtatttagaat
>TU2680779
gtattcagacccctctgaatacttgcagacattttcattttactcaccttttgtctcttccacaatgttattcctcactcctacagtgaccATCACAATTgcatgcacatggacaattatgcaatttaggtgatgacatcatttagcaacttctagcgacttttaggacagccaatagctactttccttactgaggtgttggcaacactgctaactttaaacattggctatctgagcagctaactgatcgctgaagctgtacaaagcctttctgtaaatagcccacccaatctacctacctcatccccatattgttttaatatactttctgctctttgcacacctgtatttctatttgcatatcatcatctgttcatctatcactccagtgttaatttgctaaattgtaaatacttcgatactatggcctatttattgccttaccaccatttgcacgcactgtatatagactttcttttttttcttctattgtgttattgactgtacgcttgtttattccatctgtaactctgtgttgttgtttgtgtagcgctgctttgctttatcttggccaggtcgcagttgaatatgaaaacttgttctcaactagcttacctggttaattataggtgaaatttaaaaaaaataagaaacatttttttctttcccagaaaggggatgtagctcagtggtagagggcatgctttgcatgtatgaggtcctgggttcaatccccagcttctccattaaagtttttgcaatggcccatctcctactttccagaatgttgaaattct
>TU2680778
gtattcagacccctctgaatacttgcagacattttcattttactcaccttttgtctcttccacaatgttattcctcactcctacagtgaccATCACAATTgcatgcacatggacaattatgcaatttaggtgatgacatcatttagcaacttctagcgacttttaggacagccaatagctactttccttactgaggtgttggcaacactgctaactttaaacatcggctatctgagcagctaactgatcgctgaagctgtacaaagcctttctgtaaatagcccatccaatctacctacctcatccccatattgttttaatatactttctgctctttgcacacctgtatttctacttgcacatcatcatctgctcatctatcactccagtgttaatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2680773 False 968 lncRNA 0.38 2 1005923 1040396
TU2680779 False 797 lncRNA 0.38 2 1008177 1013125
TU2680778 True 397 lncRNA 0.40 2 1010653 1013125

Neighbor

gene id symbol gene type direction distance location
trnat-ugu-120 NA coding downstream 312 1005540 ~ 1005611 (-)
LOC110514453 LOC106596281 coding downstream 57807 938871 ~ 948116 (-)
trnaa-ugc-262 NA coding downstream 83897 921955 ~ 922026 (-)
trnat-ugu-119 NA coding downstream 84640 921212 ~ 921283 (-)
trnaa-ugc-261 NA coding downstream 86074 919778 ~ 919849 (-)
LOC118947143 LOC106595224 coding upstream 893 1041289 ~ 1043295 (-)
LOC118947154 NA coding upstream 12829 1053225 ~ 1053343 (-)
trnaf-gaa-186 NA coding upstream 19677 1060073 ~ 1060145 (-)
trnai-aau-177 NA coding upstream 19832 1060228 ~ 1060301 (-)
trnai-aau-178 NA coding upstream 21380 1061776 ~ 1061849 (-)
G2340949 NA non-coding downstream 13920 876032 ~ 992003 (-)
G2340974 NA non-coding downstream 70659 933491 ~ 935264 (-)
G2340968 NA non-coding downstream 84825 917005 ~ 921098 (-)
G2340897 NA non-coding downstream 186297 811254 ~ 819626 (-)
G2340903 NA non-coding downstream 188109 810062 ~ 817814 (-)
G2341021 NA non-coding upstream 18409 1058805 ~ 1115633 (-)
G2341025 NA non-coding upstream 19461 1059857 ~ 1064279 (-)
G2341020 NA non-coding upstream 28185 1068581 ~ 1074200 (-)
G2341032 NA non-coding upstream 77365 1117761 ~ 1120758 (-)
G2341059 NA non-coding upstream 143871 1184267 ~ 1184799 (-)
G2340951 NA other downstream 76791 878809 ~ 929132 (-)
G2340905 NA other downstream 191268 806890 ~ 814655 (-)
LOC110514508 LOC106595224 other downstream 889207 114200 ~ 116716 (-)
G2340407 NA other downstream 942785 62414 ~ 63138 (-)
G2341053 NA other upstream 118202 1158598 ~ 1164054 (-)

Expression


Co-expression Network