XLOC_004240 (atp13a3)


Basic Information

Item Value
gene id XLOC_004240
gene name atp13a3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34154593 ~ 34188346 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008095
CACACGCACCTGACGCAGTTCCACGGTGACCTCATATCCTCTGCATCACTTCCTGTACATGCTGAGAGGCAGATCTGGGCTGTATTCtggcacatttacacacacacgaTCATCTGCTGTCAGTAGCGCGCACGACTGAAGTCTAGAGTCTCTTTGTCCGCGACCAGAGCGCCTTCATCATGACCCAGAGGTGATCCTCGCCGCGGTGGTTCTGGGAGTCCAGGTCTGCGGTGAGAGAGTTGAAGAGAGAGGTCTCTTTATAGGTGTAAGGATTGCCCAGGGCCACAGCGCCCACAATCTAAAGGAGCGCAGCACTTTTCAGCCAGGATTGAAGATCAGGATGGAGAAGGAAGATCTCAAGGTTGTCAACAGGGGTTTGGAGGATGAGATGGAGTTGAGAGGGTTCCGTCTGTGCCGATGGAAACTGGTTCTAGTGTGTTGTGGTGGTTTCTGTACAGGTGGTTTTCTTTTCCTACTGCTCTACTGGATGCCTGAGTGGTGTGTGAAGGCCACATGCACACGGACCACTGTCAGAGACGCAGAAGTTGCTCTGTTACGCAGCACTGATGAATTTAAGCGCTGGTTTCGGGCGAAGGTTCGGATAATGCTGGCTCCTGGGAAGAACCCCTATGACACCCTGAATTCCCAGACCGCCTCCCCTCAGGCCAATGACCACGCCCACAACATGACTGACTCCACCCACAACAAAATCAGCAGGAGTGTAGAAAGCCAGCAAGTGCAGGTCCAT
>TCONS_00008096
CGTCAATTAAATGATTGATTAATCAATAAGTAAATGTGATGACTGTCAAACCACTCAGATGAAGTTTACCTATTAAAACTCCATTGACTGCAGTGCAGGATGGCATGGAAACCTCTCCAGGGTTGATTTTCTTCAGTCTTTGTGTAAATCCAGAGTCAGATGTTTTGAATAACACACTCATGATATAAATTTCCTGTGGGCTTTATGCTGCCCTGTCGGCGGTGTTGTGACTTGTGTCTTTTTTTATATGTTTCAAGTTCCCAGTAATATAGCAGCCAGACGCTACTGGCTTTATTAATGCACAGTACAGTGCTTTTTTCCCACCCAATTTTATGTCTAGTTTAGTGTCTTTTACGTGACATTTCAGTGTGTGAATGAAACTTTGAACCACTGGTTACCTAACTAATGTTTTCTCTCACCGCGAGCTTCTTCTAAAGACTCGGTAAATCTCTGACTGGGATACACATTCACATTTCTCAGTTGAGAGAAAGCCTGTGTGATTCATGGAGTTTAATTAAGATTTGCTCTTTTGTTTCCTTTCAGGAGTCCAGGTCTGCGGTGAGAGAGTTGAAGAGAGAGGTCTCTTTATAGGTGTAAGGATTGCCCAGGGCCACAGCGCCCACAATCTAAAGGAGCGCAGCACTTTTCAGCCAGGATTGAAGATCAGGATGGAGAAGGAAGATCTCAAGGTTGTCAACAGGGGTTTGGAGGATGAGATGGAGTTGAGAGGGTTCCGTCTGTGCCGATGGAAACTGGTTCTAGTGTGTTGTGGTGGTTTCTGTACAGGTGGTTTTCTTTTCCTACTGCTCTACTGGATGCCTGAGTGGTGTGTGAAGGCCACATGCACACGGACCACTGTCAGAGACGCAGAAGTTGCTCTGTTACGCAGCACTGTATGTATTAGATCTCAGTGA

Function

symbol description
atp13a3 Predicted to enable ATP binding activity and metal ion binding activity. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A3 (ATPase 13A3).

GO:

id name namespace
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120521-1 Predicted to enable ATP binding activity and metal ion binding activity. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A3 (ATPase 13A3).

Ensembl:

ensembl_id ENSDARG00000076622

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008095 False 748 mRNA 0.53 5 34154593 34188346
TCONS_00008096 True 914 mRNA 0.43 3 34158178 34166960

Neighbor

gene id symbol gene type direction distance location
XLOC_004239 atp13a3 coding downstream 3106 34151177 ~ 34151487 (-)
XLOC_004238 atp13a3 coding downstream 7388 34116734 ~ 34147205 (-)
XLOC_004237 tdo2b coding downstream 57156 34084532 ~ 34097437 (-)
XLOC_004236 col6a1 coding downstream 88875 33996526 ~ 34065718 (-)
XLOC_004235 NA coding downstream 161446 33992033 ~ 33993147 (-)
XLOC_004241 tmem44 coding upstream 12837 34201183 ~ 34219211 (-)
XLOC_004242 lsg1 coding upstream 31645 34219991 ~ 34232906 (-)
XLOC_004243 FO681390.1 coding upstream 61110 34249456 ~ 34255220 (-)
XLOC_004244 NA coding upstream 127179 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 coding upstream 167198 34355544 ~ 34355662 (-)
XLOC_004063 CR854846.1 misc downstream 18026915 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21462902 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21532826 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21563297 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21641331 12512966 ~ 12513262 (-)
XLOC_004234 CR925698.1 non-coding downstream 188321 33966158 ~ 33966272 (-)
XLOC_004229 NA non-coding downstream 465644 33676834 ~ 33688949 (-)
XLOC_004227 NA non-coding downstream 753117 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 non-coding downstream 955989 33190658 ~ 33198604 (-)
XLOC_004247 BX548160.2 non-coding upstream 278049 34466395 ~ 34466513 (-)
XLOC_004249 NA non-coding upstream 362501 34550847 ~ 34577106 (-)

Expression


Co-expression Network