LOC118947561 (LOC106593246)


Basic Information

Item Value
gene id LOC118947561
gene name LOC106593246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493668.1
NCBI id JAAXML020000291.1
chromosome length 1079841
location 549515 ~ 550735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118947561
CCTGACCTCTACTTGTTCCTGGGCAGCCGCTACACAGCGTTACATCTTACTCTTGCCACCTCCCCGGTCAACAACAAGACTCAGGCCCTCGCACGGTTCTGGCTGGGATCTTACCTCAGAACTCTGGGGCTGATCCCAGTCGACCTGCGAGCCCCAGTCTCTTTCCTGCTACCCCCGCACTACGCCCAGCTCCAGAAGTTTTTAAGACATTTTAAACTGGAAAAATAAACAGTCACAGTTTTAACTAAAcaccgctctcttctctctcttgtgcaGGATCGGGAACCAGTGTGTCCAGTGCGCGGGCTCGCTCTAGGCGAGCCCACAACGGTCTGGCGCAACGTGGCCCATCCTGCTCTCCTGAATCGGCATCGGGACCTGTCCTAGATGGTCGCCCATGAGATCCTCCCGGTCAGGGCCGTTATGCACTCACCGGGCATGGCGAGGACATCCGCGTGCCCCCGACCAGGCTGCGGCTAAGAAGAGTCGGTGAGGCACATGCTCTGGGAGTGCAGAGCTGCCAGGGACCTGTGGAAGGAAGCAGGCCTCCTGATCACCCCGTGTCTGCCAGCAGGGGAGGACCTAACACCTCAGCTTGTGCTGTATGGGGTGGGCCGAAGGCCTATTCCATCAAAGGCCTTCACAAAGTTCTGGCCCACCCTCACGTGCCTGAAGGAAGAACTGTGGTCCTCCCGCAACCTGCTGGTAGGGAAAAGCGTAGAGACCACCCCCCAGGCAGTGGCCATGGTAGCCATGGAAGCCCTGGGATGGTACGGAAGGAAGGGGGCCTCGACCCCAGGCGAAGGGTCCCCCACAACACCCTAGGTCCCGGCGGCCACGGCCTGACAACGCTGCGGCGCCTAGGGGAGGGATCTCCTCTGGGCCCCGAAGGAAGGGACGGTAATTTATTCAGAGGAGCAGGATGAGGCGAGTTTGATTAGGACTCACCCCGTTCCTGTACAAGGGACCGaagacagccttttaacaaagtgactttttaacatgtttttcatgtcttaaaaattagatcattagtacacattttaaatggcttttacaGATTTTATGTTTTTACAAGGAAAGTACTTTTATTCATGGTTGTTTTCATTGGTTTTAACATGTACGTTTTAACTAATTTAAATGTAACTTTCAAATGCTGTGTTTTATGCCTTTATTGCCGTTTTTATGTGTATaaatgatgtaaaaaatgtatgagctgtt

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110513786, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118947561 True 1221 mRNA 0.53 1 549515 550735
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118947559 LOC106575045 coding upstream 11519 506142 ~ 537996 (+)
fam117ba LOC106575892 coding upstream 212797 300525 ~ 336718 (+)
LOC110524928 bmpr2 coding upstream 268811 226700 ~ 280704 (+)
LOC110512950 LOC106575054 coding upstream 510811 31499 ~ 39258 (+)
LOC118947575 NA coding downstream 21 550756 ~ 550934 (+)
LOC118947558 nol5 coding downstream 1125 551860 ~ 570372 (+)
LOC118947569 NA coding downstream 6193 556928 ~ 557005 (+)
LOC118947565 NA coding downstream 9723 560458 ~ 560541 (+)
LOC118947562 LOC106593246 coding downstream 24784 575519 ~ 645018 (+)
G2342146 NA non-coding upstream 89105 458759 ~ 460410 (+)
G2342140 NA non-coding upstream 106804 441288 ~ 442711 (+)
G2342139 NA non-coding upstream 108974 439576 ~ 440541 (+)
G2342137 NA non-coding upstream 114896 434366 ~ 434619 (+)
G2342114 NA non-coding upstream 121928 427376 ~ 427587 (+)
G2342190 NA non-coding downstream 36539 587274 ~ 594436 (+)
G2342198 NA non-coding downstream 106961 657696 ~ 658014 (+)
G2342201 NA non-coding downstream 149975 700710 ~ 701056 (+)
G2342211 NA non-coding downstream 184988 735723 ~ 759987 (+)
G2342106 NA other upstream 142898 404278 ~ 406617 (+)
G2342085 NA other upstream 241408 307014 ~ 308107 (+)
G2341964 NA other upstream 480334 63041 ~ 69181 (+)
G2342223 NA other downstream 231535 782270 ~ 784678 (+)
wdr12 LOC106575933 other downstream 263505 814203 ~ 846223 (+)
G2342247 NA other downstream 380900 931635 ~ 933855 (+)
G2342447 NA other downstream 410071 960806 ~ 963092 (+)

Expression

LOC118947561(LOC106593246) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118947561(LOC106593246) Expression in each Bioproject

Bar chart with 20 bars.
LOC118947561(LOC106593246) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network