XLOC_004241 (tmem44)


Basic Information

Item Value
gene id XLOC_004241
gene name tmem44
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34201183 ~ 34219211 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008097
GCTAAGCTTGTGGGCGTTACTGAAATGATACAGGTGATTGAATGGCGTTCATTCATCCACATGATACAGCTGGCAACTAAAGATTGAAGCTAGATCCACTTTTCAGCAGAAGTGAAATAAATGGATAAAAGTATGTTTTTAGACACGGTCTTTCGATGGAGCCCGGAGTTTGTTAAAGGTTGTCTTTCGACATATGAAGAACATATTTGCACTTCGGCTGGTTTTTACATCTTGTCTGCTTTGATATTACTGGTTTCCTGTTCTCTgcttCTTTATCACAGATGTAGCGTTAAAACGCGAAGCAAGAATTGGGGTGATGAAGCGGTCTGCGCGCTGTATTGTTTCGTCGGTAATTTGTGCAGCGCAGTGGGCGCTTTCCTTTCCAACCAGTTTGATTTTCAGATTTCTATGGCATCATACATGGCAATTATGGATGTTGTGAATTTTCTGTCAATATCTTTCTCCATGTATTTATGGTTTAAGTCAAGAACAGGAAGGAAAATGAGAATGATTTCAAGAAGGAGGAGACAGAACTTTCTAGCGGTGTGTTTGCTGTTTATTATGGCTGGCAGTGTTTACTTGGGTTTACCAGTCCGTTCAATTCCAGTAAGAGCATCTCCAACCATGAGGAGATTATTTGGCATGTTCCTCAATGACCATACTGAGAACCTCGGTTATGTTCTGGGTCTTCTGGCTTTCGCTATCAGCTGGACCTCCAAGTTTCCCTTCATCTTGAAAGCTAACAGAGGAGAGCAGGGATCTGCAGTGCTGGTGTCCTCCAGACTCCTGTCTTCTGTAGCTGGAGCTCTTTATGGATCTGCTATTCTTCTCTACGACACACAGCTAAAATCAGTTATCAAGACAATGCCATGGATACTCTCTGCTATCTGTGGTTCCATTCTGGATCTTTCTATTGTGGTCCTCGTCTGTTACAGATCCAGTCACAAGCGTCCCTCTGTGCGCTCTTTAGACTCGGACACTGAGTCTTTACTGGGTGAACCTTCAGTCACAGGTCAGCTATGCAACAACAATGAATGTTGCAGGAAGAAACACCATCTTTCCACTGCAAGAGGTATCTCTCCCAAAGGAACAGACATGGGACTCTACATGGATGTCAACATACAGCCAATGAGAAAGGTTTGTCTGAAGGAGGTGACCATCTCGCGGGACGGCTCCTCAGAGAGTCTTCCTCTGAAGAGGACTGTCAGGGTGGTGCGGGTTGATGAACACTGTTCCTGTGGCAGCTCCACTGACTCGTCCTCTCTCGACTCTGAACTAGAGTGGGACTTTGGAGAAACAAAATCGCAGTGGACGCCGGTAGAAGAAGCTCCAGAAGATCTGCAGAAAGTTATGCCTCTCCAGGAATGGTCAGTGGGTTCGAGTGGCAGACTAGGATCTCATGTCTGCTTCTGCAACCGTGCACAGCTGGCAGAGAAATTGGCCTCCAAATAGACAGGTGCCACTAAATCCAGTGCTGTTTCGTCATTAATGCATTTGAGTGTTTTTGAAGTCAAATAAAGCAGTGTATTTCACATTCA

Function

symbol description
tmem44 Predicted to enable L-lysine transmembrane transporter activity and arginine transmembrane transporter activity. Predicted to be located in membrane. Predicted to be active in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM44 (transmembrane protein 44).

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015174 basic amino acid transmembrane transporter activity molecular_function
GO:0015181 arginine transmembrane transporter activity molecular_function
GO:0015189 L-lysine transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-65 Predicted to enable L-lysine transmembrane transporter activity and arginine transmembrane transporter activity. Predicted to be located in membrane. Predicted to be active in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM44 (transmembrane protein 44).

Ensembl:

ensembl_id ENSDARG00000068193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008097 True 1538 mRNA 0.45 9 34201183 34219211

Neighbor

gene id symbol gene type direction distance location
XLOC_004240 atp13a3 coding downstream 12837 34154593 ~ 34188346 (-)
XLOC_004239 atp13a3 coding downstream 49696 34151177 ~ 34151487 (-)
XLOC_004238 atp13a3 coding downstream 53978 34116734 ~ 34147205 (-)
XLOC_004237 tdo2b coding downstream 103746 34084532 ~ 34097437 (-)
XLOC_004236 col6a1 coding downstream 135465 33996526 ~ 34065718 (-)
XLOC_004242 lsg1 coding upstream 780 34219991 ~ 34232906 (-)
XLOC_004243 FO681390.1 coding upstream 30245 34249456 ~ 34255220 (-)
XLOC_004244 NA coding upstream 96314 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 coding upstream 136333 34355544 ~ 34355662 (-)
XLOC_004246 xxylt1 coding upstream 182249 34401460 ~ 34480822 (-)
XLOC_004063 CR854846.1 misc downstream 18073505 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21509492 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21579416 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21609887 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21687921 12512966 ~ 12513262 (-)
XLOC_004235 NA non-coding downstream 208036 33992033 ~ 33993147 (-)
XLOC_004234 CR925698.1 non-coding downstream 234911 33966158 ~ 33966272 (-)
XLOC_004229 NA non-coding downstream 512234 33676834 ~ 33688949 (-)
XLOC_004227 NA non-coding downstream 799707 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 non-coding downstream 1002579 33190658 ~ 33198604 (-)
XLOC_004247 BX548160.2 non-coding upstream 247184 34466395 ~ 34466513 (-)
XLOC_004249 NA non-coding upstream 331636 34550847 ~ 34577106 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_07847872_07854953 NA coding CI01000306 null 7847791 ~ 7854953 (-)