XLOC_004242 (lsg1)


Basic Information

Item Value
gene id XLOC_004242
gene name lsg1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34219991 ~ 34232906 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008098
ATTTGAACGCGACACCACCGAACAAAACAAAAGTCTGGCCAAGATTTCAATTTTCGCCCAATTCTCAGTCTATTctactattatttaaataaatattcactgTACTAAAACGACATGAACATAAAGAACACAATCAACAATTGTCATCTCTTCTAAACATTCGCGAAGGAGTGGTCCCTCTCGTAGATCATTCCGTGTCACTTCCTTCCTCTGCCATAACAAACATATCACACGCGTGAAGGTTTATCCACTCGAATGTCCACGAACAACTCACTGTCACGCGTTTATATCGCCGTTTAACCGTGTAAAGAAGTTTAAAATGGGGAAGAAGAAGACTCGTGGAGAGGGTTCAGGGTTGGGGAGAGCTTTAATAAAGGAGAGACTGAACGCAGGCCGCGGATACAGGAGAAACGACACATGGCTTCACACCAGCGAGCTGAATGATGGATATGATTGGGGTcggctcaacctgcagtctgtcaCTGAGCAGAGCTCCCTGGACGACTTTCTGGCCACAGCCGAACTTGCTGGAACTGAATTTGTTGCAGAGAAGCTCAATATAAAGTTTGTCCCAGCTGAAGCAAGAGCTGGCTTGCTTTCCTCTGAGGAGTCCAGGCGGCTAAAGAAACTCCATGAGGAAAACAAACAGCTTCTGCGAATCCCCCGAAGACCTCCTTGGGATGAGAGCACAAGTCCTGAAGTTCTACAGCAAACTGAGAAAGACAGTTTCCTCACATGGAGAAGAGATCTGGCTCGGTTGGAAGAGGAGCAGAAGTTGATTCTCACCCCTTTTGAGAGAAATCTCGATTTTTGGAGGCAACTGTGGAGAGTTATTGAGAGAAGTGATGTTGTGGTTCAGATCGTTGATGCCAGAAACCCTCTTCTGTTCCGATGTCCTGATCTTGAAAAATATGTAAAAGAGGTGTCTGTTCACAAAGTAAACATGCTTCTATTGAACAAAGCTGATCTGCTGACTAGAGAACAACGGAGAGCCTGGGCTCGATATTTTCAGAAAGAGGGCATCAGAGCTGTGTTCTGGTCTGCTTTGGCTGAGGCACAACGACTCGAGGCAGAGGAGAGGGGAGAAGATGCGATGGACCAGGAAGATCAGAGTGATACAGAAGAGGAAACAGCCTCCAAAAATGCCACAGATCATCATGAGGAAAATAGCTCTTCACCAAATGAAGAGAAAGATGAGAATGAGCAAGATGAAGAAGAGGAAGGTGAAGATGAAAGAATCTGTGTTGATGAGAGCGAATGGCAAACATGCTCTGAGGAATCAGGAGATGAAGATCACGCTGAGGAGAACCCAGAATCCACAGCGACTTCATCTTTCTATAACTCCAGCCGCTTGTTACGCAAAAATGAGCTGCTGGAAATGTTTAAGTCTGTGCATTCTGGACCGACATGCAAAGATGGACAAATCACAGTTGGACTGGTTGGATATCCAAATGTTGGGAAAAGCTCCACCATCAACACCATCTTTAGGAATAAAAAAGTCTCAGTTTCGGCAACACCTGGACACACAAAGCACTTTCAGACTCTGTTTGTTGAACCCGGTCTTTGCCTGTGTGATTGTCCTGGACTGGTCATGCCTTCATTTGTGTCCACCAAAGCTGAGATGATCTGCAGCGGGATCCTACCCATCGATCAGATGAGAGATCACGTGCCAGCCATCTCTTTGGTATGTCAGAATATCCCTCGAAATGTGCTGGAGGGGACTTACGGAATCAACATCATCAGACCGAGGGAGGACGAGGACCCTGATCGGCCGCCTACCTATGAGGAGCTGCTTATGGCATACGGATATATGAGAGGCTTTATGACAGCACACGGACAGCCAGACCAATCAAGATCTGCTCGATATGTTTTAAAAGACTATGTCAGTGGCAAACTCCTCTACTGCCATCCTCCACCTCACATCGATCCTGAAGACTTCCAGCCTCAGCACGCCAAGTTTGCCATGCGGATAACAGAAGCCGAACAGATCGATGGCAGTGGTGGCAAACCATCAAAAGTGAAACGCATAGAAAACACAGTGGATAAACAGTTTTTTCATCAAGCAAATGTGCGGGCACTGACCAAGGGTGTACAGATGGTGATGGGTTACAAACCTGGAAGTGGTCCTGTTGAGGCTGGAAAAGCAAACACAGAACAACAAGCCGGAAAGCCCTGGAAAAAACATGGGAACCGGAACAAGAAGGAGAAAGTGAGAAGACTCAACAAACATCTGGATGCCTGATTTCTTACATGATTGGTTCACAAGTGCAATTCATGTTAGTAGATGTTTGGATTTGATACATCCTTTAAGGCAAAGACATTTCAAATTTCATACCTGGATGTGACTAATAAGTGCTGCTGGACATTCCTCTTTGTTTGAAATGTCATCACTTGTAATTATAATACACTCACTCTATTTTATCATTGTACGGGATGATGAGATGAATGGATACATTGGTAGACACTGATACATGCAGTTCTCCTCATAATAgcaataaaagtcattttattCTTTACTAAAA
>TCONS_00008099
TTTCAGACTCTGTTTGTTGAACCCGGTCTTTGCCTGTGTGATTGTCCTGGACTGGTCATGCCTTCATTTGTGTCCACCAAAGCTGAGATGATCTGCAGCGGGATCCTACCCATCGATCAGATGAGAGATCACGTGCCAGCCATCTCTTTGATAACCTTTTACGCTGCATTGATTGTGACAGTTGCATTTTTAAACTTGATCGCAACACATACACTACTGTAAAGCTGCATGATCCATTTTACTAACCCTAAACATTTTGATTGGTAGTACGTAAGAATTTTTGTTATCAATGAGTTACCAAAAATCTGAAAAGTTTGGATTTTGTCCTTAGCACAAATACGTATGTCAGAATATCCCTCGAAATGTGCTGGAGGGGACTTACGGAATCAACATCATCAGACCGAGGGAGGACGAGGACCCTGATCGGCCGCCTACCTATGAGGAGCTGCTTATGGCATACGGATGGCAAACTCCTCTACTGCCATCCTCCACCTCACATCGATCCTGAAGACTTCCAGCCTCAGCACGCCAAGTTTGCCATGCGGATAACAGAAGCCGAACAGATCGATGGCAGTGGTGGCAAACCATCAAAAGTGAAACGCATAGAAAACACAGTGGATAAACAGTTTTTTCATCAAGCAAATGTGCGGGCACTGACCAAGGGTGTACAGATGGTGATGGGTTACAAACCTGGAAGTGGTCCTGTTGAGGCTGGAAAAGCAAACACAGAACAACAAGC
>TCONS_00008100
TTCGGCAACACCTGGACACACAAAGCACTTTCAGACTCTGTTTGTTGAACCCGGTCTTTGCCTGTGTGATTGTCCTGGACTGGTCATGCCTTCATTTGTGTCCACCAAAGCTGAGATGATCTGCAGCGGGATCCTACCCATCGATCAGATGAGAGATCACGTGCCAGCCATCTCTTTGATAACCTTTTACGCTGCATTGATTGTGACAGTTGCATTTTTAAACTTGATCGCAACACATACACTACTGTAAAGCTGCATGATCCATTTTACTAACCCTAAACATTTTGATTGGTAGTACGTAAGAATTTTTGTTATCAATGAGTTACCAAAAATCTGAAAAGTTTGGATTTTGTCCTTAGCACAAATACGTATGTCAGAATATCCCTCGAAATGTGCTGGAGGGGACTTACGGAATCAACATCATCAGACCGAGGGAGGACGAGGACCCTGATCGGCCGCCTACCTATGAGGAGCTGCTTATGGCATACGGATGTCAGTTCACTTTGCACAATATATGAGAGGCTTTATGACAGCACACGGACAGCCAGACCAATCAAGATCTGCTCGATATGTTTTAAAAGACTATGTCAGTGGCAAACTCCTCTACTGCCATCCTCCACCTCACATCGATCCTGAAGACTTCCAGCCTCAGCACGCCAAGTTTGCCATGCGGATAACAGAAGCCGAACAGAT

Function

symbol description
lsg1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in ribosomal subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in Cajal body and endoplasmic reticulum. Predicted to be active in cytosol. Is expressed in eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human LSG1 (large 60S subunit nuclear export GTPase 1).

GO:

id name namespace
GO:0000054 ribosomal subunit export from nucleus biological_process
GO:0051168 nuclear export biological_process
GO:0015031 protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0015030 Cajal body cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-2184 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in ribosomal subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in Cajal body and endoplasmic reticulum. Predicted to be active in cytosol. Is expressed in eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human LSG1 (large 60S subunit nuclear export GTPase 1).

Ensembl:

ensembl_id ENSDARG00000015352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008098 False 2522 mRNA 0.45 14 34219991 34232906
TCONS_00008099 False 739 lncRNA 0.46 3 34220350 34225557
TCONS_00008100 True 693 lncRNA 0.45 4 34222893 34225798

Neighbor

gene id symbol gene type direction distance location
XLOC_004241 tmem44 coding downstream 780 34201183 ~ 34219211 (-)
XLOC_004240 atp13a3 coding downstream 31645 34154593 ~ 34188346 (-)
XLOC_004239 atp13a3 coding downstream 68504 34151177 ~ 34151487 (-)
XLOC_004238 atp13a3 coding downstream 72786 34116734 ~ 34147205 (-)
XLOC_004237 tdo2b coding downstream 122554 34084532 ~ 34097437 (-)
XLOC_004243 FO681390.1 coding upstream 16550 34249456 ~ 34255220 (-)
XLOC_004244 NA coding upstream 82619 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 coding upstream 122638 34355544 ~ 34355662 (-)
XLOC_004246 xxylt1 coding upstream 168554 34401460 ~ 34480822 (-)
XLOC_004247 BX548160.2 coding upstream 233489 34466395 ~ 34466513 (-)
XLOC_004063 CR854846.1 misc downstream 18092313 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21528300 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21598224 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21628695 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21706729 12512966 ~ 12513262 (-)
XLOC_004235 NA non-coding downstream 226844 33992033 ~ 33993147 (-)
XLOC_004234 CR925698.1 non-coding downstream 253719 33966158 ~ 33966272 (-)
XLOC_004229 NA non-coding downstream 531042 33676834 ~ 33688949 (-)
XLOC_004227 NA non-coding downstream 818515 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 non-coding downstream 1021387 33190658 ~ 33198604 (-)
XLOC_004249 NA non-coding upstream 317941 34550847 ~ 34577106 (-)

Expression


Co-expression Network