XLOC_004243 (FO681390.1)


Basic Information

Item Value
gene id XLOC_004243
gene name FO681390.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34249456 ~ 34255220 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008101
ctgtgcggagtttgctcgttctccccgtggtcgcgtgggttttccccgggtcctccggtttcctcccaaacCGGATTTGGCTGATttgaatgttgttccaggatcaacatagatgttaatctagGAACATGTCTggcttggtgaaatcagTGTCTGAAATGGTTCTGTGGTGAGAAGGCAGGGCCGAGTCcgtgggaacggaatgaggccgCCGCGTAAGTGAATACACCTGTGGAGCGCACCGGCCTCGAAtaccacggaaggagctctggactatgaGAGGAGAAACGATgccagaggaagccgagagaggaccgacCCGGACAtaatgttttacttttgctttcagtttgactttCGTTGACAGTTTGCTTTCGTCCGTATGTCTTGGTTtagatggcagtctccgtgagacAGAGACTCtctgttaataaatattttaaaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008101 True 446 lncRNA 0.50 2 34249456 34255220

Neighbor

gene id symbol gene type direction distance location
XLOC_004242 lsg1 coding downstream 16550 34219991 ~ 34232906 (-)
XLOC_004241 tmem44 coding downstream 30245 34201183 ~ 34219211 (-)
XLOC_004240 atp13a3 coding downstream 61110 34154593 ~ 34188346 (-)
XLOC_004239 atp13a3 coding downstream 97969 34151177 ~ 34151487 (-)
XLOC_004238 atp13a3 coding downstream 102251 34116734 ~ 34147205 (-)
XLOC_004244 NA coding upstream 60305 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 coding upstream 100324 34355544 ~ 34355662 (-)
XLOC_004246 xxylt1 coding upstream 146240 34401460 ~ 34480822 (-)
XLOC_004247 BX548160.2 coding upstream 211175 34466395 ~ 34466513 (-)
XLOC_004248 pik3ca coding upstream 233649 34488869 ~ 34522249 (-)
XLOC_004063 CR854846.1 misc downstream 18121778 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21557765 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21627689 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21658160 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21736194 12512966 ~ 12513262 (-)
XLOC_004235 NA non-coding downstream 256309 33992033 ~ 33993147 (-)
XLOC_004234 CR925698.1 non-coding downstream 283184 33966158 ~ 33966272 (-)
XLOC_004229 NA non-coding downstream 560507 33676834 ~ 33688949 (-)
XLOC_004227 NA non-coding downstream 847980 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 non-coding downstream 1050852 33190658 ~ 33198604 (-)
XLOC_004249 NA non-coding upstream 295627 34550847 ~ 34577106 (-)
XLOC_004254 BX293991.1 non-coding upstream 969802 35225022 ~ 35225139 (-)

Expression


Co-expression Network