XLOC_004244


Basic Information

Item Value
gene id XLOC_004244
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34315525 ~ 34358689 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008833
ctcgaaccaggaaccttcttgctgtaagttttacctggtttctggaattTTCCTTTACTGGACTCAAACTCCAGTCTGCTCCGCTCTGCATCCCAAATCCCACACCGTACATGGCAAACCAGTCAACCAGacaagccatccatatggagGATCCACAAGAAGCCACAAGATCACCCTGCTTTTATTGCTTGTGTTTTAACACCACAAGAGGAGGCACATCTGACAAGAACACAACCTCGGCTGTCACTGCATACAGGTCAGGACTGGATATCTATGACTTGGATGAATATTAAAAAGACACACTATAGCCTGATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008833 True 316 lncRNA 0.45 3 34315525 34358689

Neighbor

gene id symbol gene type direction distance location
XLOC_004243 FO681390.1 coding downstream 60305 34249456 ~ 34255220 (-)
XLOC_004242 lsg1 coding downstream 82619 34219991 ~ 34232906 (-)
XLOC_004241 tmem44 coding downstream 96314 34201183 ~ 34219211 (-)
XLOC_004240 atp13a3 coding downstream 127179 34154593 ~ 34188346 (-)
XLOC_004239 atp13a3 coding downstream 164038 34151177 ~ 34151487 (-)
XLOC_004246 xxylt1 coding upstream 42771 34401460 ~ 34480822 (-)
XLOC_004247 BX548160.2 coding upstream 107706 34466395 ~ 34466513 (-)
XLOC_004248 pik3ca coding upstream 130180 34488869 ~ 34522249 (-)
XLOC_004249 NA coding upstream 192158 34550847 ~ 34577106 (-)
XLOC_004250 mapkapk3 coding upstream 221396 34580085 ~ 34628789 (-)
XLOC_004063 CR854846.1 misc downstream 18187847 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21623834 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21693758 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21724229 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21802263 12512966 ~ 12513262 (-)
XLOC_004235 NA non-coding downstream 322378 33992033 ~ 33993147 (-)
XLOC_004234 CR925698.1 non-coding downstream 349253 33966158 ~ 33966272 (-)
XLOC_004229 NA non-coding downstream 626576 33676834 ~ 33688949 (-)
XLOC_004227 NA non-coding downstream 914049 33305132 ~ 33401476 (-)
XLOC_004254 BX293991.1 non-coding upstream 866333 35225022 ~ 35225139 (-)
XLOC_004255 NA non-coding upstream 1079324 35438013 ~ 35441417 (-)
XLOC_004257 NA non-coding upstream 1220041 35578730 ~ 35741444 (-)

Expression


Co-expression Network