XLOC_004246 (xxylt1)


Basic Information

Item Value
gene id XLOC_004246
gene name xxylt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34401460 ~ 34480822 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008103
TTCCGGTGATGTAAGACGCGCAAGTGTTCAGATGTCTCGTGTCtgcattattattttgcttttgcaaatgtacatttttccATAGAGTCTTTAATAACCCACCGCTCCAGTTGTCttccagcagcagcagctcctCTTGTCATGATTTCTGTGTGTATCGCGCGCCGCTGAAGGCGTCATGTGACGGCGgCCATGATTGGACACTAGGAGCTGTCAGCAAGACTTAAGGAAGAGCCTGCTGTTGTATTTTGCGCATGTGGAAGTGTCTCCATGGGTGTCCTGCGGGTGCTGTGGGGCATCATGGGAAGGATCAGCATGTTCAGGTCGTATCAGATCGTGCTTCTCCTCGCTGCAGCTTTAGCAGTGGTGGCGTTTTATTACTTCGGCTCAGAAAAGCAGAACTTCTCCAGCACCACAAAACGCATCAAGGAGACGCAAGCGAGCCATAACAGCAACCGCGACGACGCCGATCTCTCCATAGACATCCAGCCGGGACATCTAGAGAGTAGACCGGGAGCCGGAGCGGAGCTGGAGGGAAAACCCAAACGCTTTCATGCTCTCATGATGTTCACCAAGGTGGACAAGAGCTTGAGCCTGCAGCAGAAATTTCAGACGGCCATGCGCTCAATGGTCAAACATGGACGCTTTCTGGAGGATGAGATACTGGTTCTGCATTACGTCTCTGATTTGGGCAGTCAGGAGTTTGGGGAGAAGATGCTTCCTGAACTCCTGCTGGATGCAAGCTTTCAGTATGAGGTCGTGTTTCACAATGTTGATACTCTTACGGAGAAATTGTTCCCGATTGTAGAGGCCATGCAGAAGCACTTTAGTGCTGGTTCGGGTGCATATTATAGCGATGCCATCTTTTTCCTGTCTGTGGCCATGCATCGCATCATGCCTGCAGAATTGAAGCGCATTGTGCAGTTGGATCTGGATCTAAAATTTAGAAGCAATATCAGAGACCTTTTCCAAGAGTTCAACCATTTCCCTTCGGACGCCGTCATTGGGATTGCACGTGAAATGCAGCCAGTTTACAGGCACACTTTCTGGCAGTACCGCAAAGAAAATCCCAAATCCCGTGTAGGTGACCCTCCTCCAGACGGTCTGCCAGGCTTCAACAGTGGCGTAATGCTTCTAAACCTGGACTCCATGCGTCGCTCCACTGTATACAACCAGCTCTTGGAGCCTGAGCGAGTGGCCCGACTTGCAGATAAATACCACTTCCGGGGACACCTGGGAGATCAGGACTTCTTTACCATGATCGGGATGGAGCACACCGAACTGTTTTACCCTCTTACCTGTGGCTGGAACCGGCAGCTTTGCACTTGGTGGAGGGATCATGGGTATGGGGACGTCTTCCAGCTGTATTATCATTGTGACGGACCAGTGCACATCCATCACGGCAACTGCAACACTCCCATTCCTGACGATTGAGGGTCAGAGTGAATGATAAATCGTCAGTGAAACGCAAGTTTTATTTGCACACAAGTTCATCGAGGCAGAAAGGGCCTGTTGGTAAAGGTGCTATCAGTGTGGCGTTCTCATGCTCCAGATATTATTTGGTCATTTACACCACTGAGGCTGTTGGTGCTTTTCTAAAGTTACTGAAAGACAAAGACTCTGCTTTATTTAGCAGTTTAAGTGAAGCAGTGAATCAGAGTTTCTCAGGCAGGTGTTTCATCAAACTGATCTTAAACAGCAGGTTTGGAAGCAGCCAATCATAGCGAGGTTTCTTTTCCACCCCATGATGCCGCTCTGTGTTGTTTACAGATGTAGACACATCAAGGTACCATTATCTCTCTATTGCACAACATATTTTTCGTTTTTGTTTTGAGCGTTTCTTAAATTGACCGTTCTCCCAAAATTGAGAATTCCTTCATCTGCTCAACCTCATGTCATTTCCAACCTATAAGACAAGTTCTGCCCCTGCAATCAAGGTTTATTCACTCTGacacttcaaaacatttataagGCGATTGTAAAATACATCCATAAGAGTTAAAACCAAGTTTAACCAAATTTGAATCCAAGTTTTCTGAAGAGGCACGtttgctttatttaataaatttatttaatttagcctTTTGTTCACAGACAGTAGGAATCAACTTAAACAGAAGCTCAACCATATCTGCTTGATGCACAACAACAAACCTCATTGGCTCTTGCAAAAGCACATCTTACATCACACATAAGCCAGGGCGCAggtttgctcttgacattggtggggacctTTGAACCACCTGTGAAATATGACATGCTAGCCTACTCTGAGGGATTATGAGAACTGACAGGAATCATATTATcaatatttgtacatttagtaGTTTAttgtgtattgtttatttttagttttcagaCCATTTTATACACGGACTATATCAGCCTTC
>TCONS_00008104
ATCAGtcttaaaaaagattaaaaaaaagtgtttaagtGTCTTAAAATTAGTTCATGTGACCTATTggataagatattttgaagaatgttgtaaactggtaGCCAGTGACATCCATAGTAGTGGAAAAATGAATTCAATGGTtactgttttccaacattcttcaaagtagtTTAAATTAAAGAAAGAATCTTTTCAAGTTTGACAAGTGGAGGTgcagtaaacgatgacagaattttcatttccaGATGAATTGTCCCTTGTGTGCGATTCTCAGGTaaacaattgtaattattaatttccttttttttgcatttaggCCATGATTGGACACTAGGAGCTGTCAGCAAGACTTAAGGAAGAGCCTGCTGTTGTATTTTGCGCATGTGGAAGTGTCTCCATGGGTGTCCTGCGGGTGCTGTGGGGCATCATGGGAAGGATCAGCATGTTCAGGTCGTATCAGATCGTGCTTCTCCTCGCTGCAGCTTTAGCAGTGGTGGCGTTTTATTACTTCGGCTCAGAAAAGCAGAACTTCTCCAGCACCACAAAACGCATCAAGGAGACGCAAGCGAGCCATAACAGCAACCGCGACGACGCCGATCTCTCCATAGACATCCAGCCGGGACATCTAGAGAGTAGACCGGGAGCCGGAGCGGAGCTGGAGGGAAAACCCAAACGCTTTCATGCTCTCATGATGTTCACCAAGGTGGACAAGAGCTTGAGCCTGCAGCAGAAATTTCAGACGGCCATGCGCTCAATGGTCAAACATGGACGCTTTCTGGAGGATGAGATACTGGTTCTGCATTACGTCTCTGATTTGGGCAGTCAGGAGTTTGGGGAGAAGATGCTTCCTGAACTCCTGCTGGATGCAAGCTTTCAGTATGAGGTCGTGTTTCACAATGTTGATACTCTTACGGAGAAATTGTTCCCGATTGTAGAGGCCATGCAGAAGCACTTTAGTGCTGGTTCGGGTGCATATTATAGCGATGCCATCTTTTTCCTGTCTGTGGCCATGCATCGCATCATGCCTGCAGAATTGAAGCGCATTGTGCAGTTGGATCTGGATCTAAAATTTAGAAGCAATATCAGAGACCTTTTCCAAGAGTTCAACCATTTCCCTTCGGACGCCGTCATTGGGATTGCACGTGAAATGCAGCCAGTTTACAGGCACACTTTCTGGCAGTACCGCAAAGAAAATCCCAAATCCCGTGTAGGTGACCCTCCTCCAGACGGTCTGCCAGGCTTCAACAGTGGCGTAATGCTTCTAAACCTGGACTCCATGCGTCGCTCCACTGTATACAACCAGCTCTTGGAGCCTGAGCGAGTGGCCCGACTTGCAGATAAATACCACTTCCGGGGACACCTGGGAGATCAGGACTTCTTTACCATGATCGGGATGGAGCACACCGAACTGTTTTACCCTCTTACCTGTGGCTGGAACCGGCAGCTTTGCACTTGGTGGAGGGATCATGGGTATGGGGACGTCTTCCAGCTGTATTATCATTGTGACGGACCAGTGCACATCCATCACGGCAACTGCAACACTCCCATTCCTGACGATTGA

Function

symbol description
xxylt1 Predicted to enable UDP-xylosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human XXYLT1 (xyloside xylosyltransferase 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035252 UDP-xylosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00514 Other types of O-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-120521-2 Predicted to enable UDP-xylosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human XXYLT1 (xyloside xylosyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000088799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008103 False 2390 mRNA 0.46 5 34401460 34480822
TCONS_00008104 True 1561 mRNA 0.47 4 34402416 34478225

Neighbor

gene id symbol gene type direction distance location
XLOC_004244 NA coding downstream 42771 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 coding downstream 45798 34355544 ~ 34355662 (-)
XLOC_004243 FO681390.1 coding downstream 146240 34249456 ~ 34255220 (-)
XLOC_004242 lsg1 coding downstream 168554 34219991 ~ 34232906 (-)
XLOC_004241 tmem44 coding downstream 182249 34201183 ~ 34219211 (-)
XLOC_004248 pik3ca coding upstream 8047 34488869 ~ 34522249 (-)
XLOC_004249 NA coding upstream 70025 34550847 ~ 34577106 (-)
XLOC_004250 mapkapk3 coding upstream 99263 34580085 ~ 34628789 (-)
XLOC_004251 dnah1 coding upstream 152570 34633392 ~ 34720630 (-)
XLOC_004252 chchd4a coding upstream 298788 34779610 ~ 34783938 (-)
XLOC_004063 CR854846.1 misc downstream 18273782 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21709769 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21779693 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21810164 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21888198 12512966 ~ 12513262 (-)
XLOC_004235 NA non-coding downstream 408313 33992033 ~ 33993147 (-)
XLOC_004234 CR925698.1 non-coding downstream 435188 33966158 ~ 33966272 (-)
XLOC_004254 BX293991.1 non-coding upstream 744200 35225022 ~ 35225139 (-)
XLOC_004255 NA non-coding upstream 957191 35438013 ~ 35441417 (-)
XLOC_004257 NA non-coding upstream 1097908 35578730 ~ 35741444 (-)
XLOC_004264 NA non-coding upstream 1761237 36242059 ~ 36246756 (-)

Expression


Co-expression Network