XLOC_004249


Basic Information

Item Value
gene id XLOC_004249
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34550847 ~ 34577106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008834
CTTTATACCTCAAGGCTCgagcatcaaaataaagcacTAACACACAAAACGCGGACAATGAGGGGTGCTAGCCGGTCCAAAATCACGCAGAATCTGGATAAGAGAGAATGTTAATGTTCACCGCACCACTGAGGATGCCCTACAGACCGTCCCGTCTCACCTCTGACCCACAGCCATCCTGCCGTCCAACTGTCCACTACACCAGAGTCTCTGATCCAGTCGCTGTAAGATAACCAGTGCTTGTGTATTGTGTGTGGTTTCTCACTCTGTTTTGAAAGAGCCATAATCCGTTTACATGGCATGAGGTCTACACAAAGCCTGGGAGATTTCATTTGCACTTAATGGGGTTTAGGTTACCTTTACAACACTAGTTCTGAAAAAATTAGGACATTTTGTAAATGCTGGTATTAATTACTGTTAAtcaggcagatttttttttaaatgtagaattaCAGGTAGCACTTTCCAATACGGTCATAAGTTACAATGAACAAGCAATGAGCAATACAGTTACTACAgtctttattcatctttgttgatgttagttaatgaaattgAAGTTATTCATTACTTGTTAACTCGCCAAAATGATTTAACTAATGTTATTAAatggctctctggaatacttaAATCTGATTGGGCAATCATGTCATTGCAAGGTATGTTGTGTTATATTATTTGAGGGATGaagtacatccaggcggttgtTGTTGCAGAATGAAGTGAAGCGAAGCACTGCTGTATATAACTGAAGGCcattattctgtgaaaacaaccaccctggatgtactttatcctaacatggctacttgccacaaaactgaCACAAATCATCGTTCTTAGccataatagtttgttaattctttaattaaaagcAAAAGTGGCAAAATCGAAAAACAGCTAATGGAGtgtacactaacctgcgcattattcaatCACAAAATGACGCCATCAGTCAAAattgcaaagagaaaagaaaactgctgatggagtatacactaacttgaGCATTATTCggtcacaagatggtgccaaacaatAAAAAGCGCAAAGCCGatagaaacgaaaacagctgatggagtatacaataacctgcacattattcaatcACAAGATGGCGTTAAACAGTCAAACGCAAAGCTgtcagaaacgaaaacagctgatggagtatacactaacctacgcattattcagtcacaagatggcaccaaacggTCAAAAACGcagagctgacagaaacaaaaacagctgatggagtatacactaacctatgcATTATTcggtcacaagatggcgccaaacaataaaaagagcaaagctgatagaaacgaaaacagctgatagtatacactaacctgcacattattcaatcACAAGATGGTGTTAAACAGTCAAACGTAAagctaacaaacaaaaacagctgatggagtatacactaacctatgcattattcagtcacaagatggtgccaaacggtcaaaaacgcaaagctgacagaaacaaaaaacagctgatggagtatacaataacctgcacattattcagtcacaagatggcgttAAACAGTCAAACGCAAAGCTgtcagaaacgaaaacagctgatggagtatacactaacctacgcattattcagtcacaagatggcaccaaacggtcaaaaacgcaaagctgacagaaacaaaaaacagctgatggagtatacactaacctgcacattattcagtcacaagatggcgccaaacggtcaaaaacgcaaagctgacagaaacaaaaaacagctgatggagtatacttCAACCTGTACATTATTcaatcacaagatggcgccaaacagtcaaaaatgcaaagctaacacggtgtttcctctaggattttttccagctgtggcggcaggtcttttttacacagatctaccaactacctgtggcgttatttcaataacatatgtcatgagcgcagtattaaaagtcgagatcgcatttatgtaattatgtaaacgctgctgaagtgcgatttagtgtgtttatgtaacaagtaaaTCTCCAACATAagttagatttgctaggaatatttatgaatgtctccaatagacctacagagcggtattaatgcgtTCTGAGGTGAAGTgaagcacgtaaccttaaagggttaaacaaataacgcacagctcTACTATGgtaacagaaaagtttgcgctgttataattcacttaccttttaatacgttttggtgcaattatcacccgctattaaaaaaaacacacgacttaatgttttgaatgaaaagctgtaacGTAGacgtggcgggatcaattttggcatTGCGTCCTGCCATGGAAGAATAAATTTAGCGGAAACCAtgtaacaaaaagtaaaatagcTGATGGGGTAAACACTAACCGGCACATTATTTGGTGGCGCCAagcagtcaaaaacgcaaagctgacagaaacaaaattaCGATATTAAACCTGCTCTGCAATCATTCAGAAGAGAGCATTGAAATATTGTACAGACCTAAGTTAACTACGTTTATCTGAGTCTCTCTGATGCAATAAAATATTTCTTTGtacttttgtaaattaaataaaatttgatttgcattttagAAAATGTCACAACTTTTTCAGAACTTGGCTTGTAATACTATGGCtcttatatgtatatttaatatacatatatttacagaaatgtctgtTATACCTATATGGGAACTGCAGGTGTGTTCGTTTGCTGCTCCTCCAATATTTGTGCTTCTGTTTTGTCAAATCTGAAAGGGTTTCTCTCTGTTATTTTGAGGGATGGATGACAACATTGTTGTATCTTTGTACATAGAAGTccgagaaaaacaaaaaacactcatTGTGTCAAAGAGCTTTATTTACTTCATCTCCCGAAAACATTATTAGAGCTGTTTTTTATATGCTTGGAAAGAAATATTGACCTTTTTCACCTGACATTTAAATCAGATACTGATTATCAATTCAAGTGCTAGTTGTTTTAATCAGGCAGGTATTTTTTATATCATGTcaatttacaaaagtgattttaacTGCATGTTTCTGAGAATTCTAATAGCTCGTGAGAGGGAAATTTAAGCTGTTTGTTACATTAACAAATTTGGGAACAAGACAAAAATCTCAGTATTTGTATTGATATTAAACCTGCTCTACAGTTACTGATCATTATTAGCCATTTGCATTTGCACTCCATTTTGTTTGGAAACAAGCTAGTTTTGCAAgtcatttatcattttttaatccatttagctAATATataggtctggcaggagcacttttatcttagcttagcataaatcactgaatcagattagaccattagcatcacactcaaaacattcaaataaaagtttcaatagtttcctatttaaagcttgactcttctgttggTTACATTATATAcagaagtgtcaagctttaaatattagcaaaactcttagattttttttttatgctaatggtctaatctgattcaatgacttatgctaagctaagctaaaagtgctcctgccagatcaGGAAATcatctgaatggattcaaaaatgataaaactccACCATTTAattctaggtgacttgtaaaatcaGCCTATTTCTGTTTCTTTAAAGGTTAAAACATAGTACAGAACTGTTAACTGAGTTCATCTGAGTGTGTCCGATGTTAAATCTGTGTTTCTTTAGTCTAGCTGAACATGTTTATGTGCACTGAATTGTTGCCTCGAACCGTATCCAAAGAGTGCTGTGATGATTCCTGTACATTTGAAACAGATCTTGAATATTTAAATGAGATTTTCTGGAAAATGACTGCTTGTATTGTTATGATTTGGTGCCAGAATCACAATAAATATATAGAGATGTTTTGATGTAATAGTGCATCGTTAGTGAAGAATCACTGATTTGAATTCATCTGTGCATCCAAATACGTTTTCATGTTCACCACCACTCGTATGACATAACCGAAAGACAAAACTGTGTGTGTACATACTACAAGATCATGGAAAAGTAATATATTTGATGTCAGTTCACATGGAACTTTTATCGCACCCATTGAAAAAgattcagtgtttgtgtgtgtttgcattgaaAATTCTCCTTGAATAAACATTTTGTGGTGATTTTAAATGTTGTCGTTTTGCTTCCATGCTGAATATTGTtttacacttattatttttatgtaaacatttccaaaaataacatttaaaataaacaatattaataacaatatctaggctatctatccatctgtccgtccgtctatctatccatccatacatctatctacATTTCTGCCAATCTATTTTaaccgttcatccatccatccgttcttccatccatcc
>TCONS_00008109
CTTATAACGTAGGGTGGGCGTGTCCGCGTGCCTCTGCGTCGCAACGATTGGCTTCGCCGCCTGTCAATCAGTGGGCGTGTGTGCTCGTGTTTTCACATACTTCTCCTTTATACCTCAAGGCTCgagcatcaaaataaagcacTAACACACAAAACGCGGACAATGAGGGGTGCTAGCCGGTCCAAAATCACGCAGAATCTGGATAAGAGAGTATGCATGACAAACTGCCCTACGCTTATAGTAACCGTCGGTCTGCCCGCCAGAGGAAAGACCTACATCTCCAAAAAACTGACACGCTACCTCAACTGGATTGATGTTCCTACGAAAGAGTTTAACGTTGGCCAATACAGACGAGAATGTGTTAAGATCTACAAATCCTTTGAGTTTTTTCGACCAGACAATGAAGAGGGGCTCAAAATCAGGAAGCAGTGTGCACTGGCAGCTCTCAATGATGTCCGGCAGTTCCTCACAGATGAAGGTGGACAGGTGGCGGTTTTTGATGCCACAAACACGACAAGAGAAAGAAGAGACACAATCATCAGATTTGCAGAGCAGAACGGTTTCAAGGTGTTCTTTGTAGAGTCTGTGTGTGAAGACCCTGACGTTATCGCTGAAAACATTGTGCAAGTGAAGCTGGGCAGTCCAGACTACACACACTGTAACACAGAAGAGGCCGTCGCTGACTTTATGAAGAGGATAAAGTGTTATGAGAACTCCTACCAACCCCTGGATGAGGAACTGGACCGggaTCTTTCCTTCATAAAGATCATTGATGTGGGCCGAAGGTACCTAGTGAACCGGGTTCAGGACCACATACAGAGCAGAATAGTTTACTACCTCATGAATATCCACATCACGCCGCGGTCCATCTACTTGTGCCGGCATGGAGAGAGTGATCTGAACATTAAAGGCCGAATCGGAGGAGATTCAGGGCTTTCAGCAAGGGGAAAGAAGTATGCTGAGACTTTGGGTCAGTTTATCCAGTCGCAGAATATTCACGAATTGAAAGTGTGGACGAGTCAGATGAAGAGGACCATACAGACGGCAGAAGCTGTGGGCGTACCGTACGAACAGTGGAAAGCTCTCAATGAGATCGATGCCGGTGTCTGTGAGGAGCTCATGTATGAGGAGATCCAGCAGCGATATCCGCTTGAGTTTGCATTACGGGACCAGGATAAATATCGATACCGCTATCCCAAAGGAGAGTCCTATGAAGACTTGGTCCAGAGGCTGGAACCCGTGATCATGGAGTTAGAAAGGCAGGAAAACGTTCTGGTCATCTGTCATCAAGCCGTCATGAGATGCTTGCTGGCCTACTTTCTGGACAAAACAGCAGAGGAATTGCCTTATCTGAAATGCCCTCTACACACAGTATTGAAGTTAACACCAGTGGCCTATGGTTGCAAGGTGGAGTCGATTGATTTGAAAGTGGAAGCTgtgaacacacacagagacagaccgACGAATGTTAATGTTCACCGCACCACTGAGGATGCCCTACAGACCGTCCCGTCTCACCTCTGA
>TCONS_00008110
ACTGATGGTTATGGACGCTCGAGTGTAGAGACGACGGAATATAATGAGTTTAATAGAGAACAACACGGAGCAATGCGGCAATAGTCTGACCCGAGAGCTCACCCAGAATCCTTTAAAGAAAATATGGGTGCCATCCTCCAGAAACGGCCTTCCTGACAGGCACATTAGTCAGAAAAAGGTATGCATGACAAACTGCCCTACGCTTATAGTAACCGTCGGTCTGCCCGCCAGAGGAAAGACCTACATCTCCAAAAAACTGACACGCTACCTCAACTGGATTGATGTTCCTACGAAAGAGTTTAACGTTGGCCAATACAGACGAGAATGTGTTAAGATCTACAAATCCTTTGAGTTTTTTCGACCAGACAATGAAGAGGGGCTCAAAATCAGGAAGCAGTGTGCACTGGCAGCTCTCAATGATGTCCGGCAGTTCCTCACAGATGAAGGTGGACAGGTGGCGGTTTTTGATGCCACAAACACGACAAGAGAAAGAAGAGACACAATCATCAGATTTGCAGAGCAGAACGGTTTCAAGGTGTTCTTTGTAGAGTCTGTGTGTGAAGACCCTGACGTTATCGCTGAAAACATTGTGCAAGTGAAGCTGGGCAGTCCAGACTACACACACTGTAACACAGAAGAGGCCGTCGCTGACTTTATGAAGAGGATAAAGTGTTATGAGAACTCCTACCAACCCCTGGATGAGGAACTGGACCGggaTCTTTCCTTCATAAAGATCATTGATGTGGGCCGAAGGTACCTAGTGAACCGGGTTCAGGACCACATACAGAGCAGAATAGTTTACTACCTCATGAATATCCACATCACGCCGCGGTCCATCTACTTGTGCCGGCATGGAGAGAGTGATCTGAACATTAAAGGCCGAATCGGAGGAGATTCAGGGCTTTCAGCAAGGGGAAAGAAGTATGCTGAGACTTTGGGTCAGTTTATCCAGTCGCAGAATATTCACGAATTGAAAGTGTGGACGAGTCAGATGAAGAGGACCATACAGACGGCAGAAGCTGTGGGCGTACCGTACGAACAGTGGAAAGCTCTCAATGAGATCGATGCCGGTGTCTGTGAGGAGCTCATGTATGAGGAGATCCAGCAGCGATATCCGCTTGAGTTTGCATTACGGGACCAGGATAAATATCGATACCGCTATCCCAAAGGAGAGTCCTATGAAGACTTGGTCCAGAGGCTGGAACCCGTGATCATGGAGTTAGAAAGGCAGGAAAACGTTCTGGTCATCTGTCATCAAGCCGTCATGAGATGCTTGCTGGCCTACTTTCTGGACAAAACAGCAGAGGAATTGCCTTATCTGAAATGCCCTCTACACACAGTATTGAAGTTAACACCAGTGGCCTATGGTTGCAAGGTGGAGTCGATTGATTTGAAAGTGGAAGCTgtgaacacacacagagacagaccgACGAACGTAGATGTGTCTCGGCTGGCGGAAGAGGCTTTGTTAACAGTACCAGATCATCACTGAACGTTCCTCACAACAACATTATCTCATTCCCATTTTATTCCAATCCTAAAATGCATTTGACACCTCAGAGATTATGAAGCACTTGAGTCATTCAGATTTGTGTTCTTGTGTTTAATATTAAATTGCACTTTATTCTAaatgcacacatatatacatatgaatTCATCTGCTGCTATGAAAGATCACTCCAGAggcacattatatttatttatggtaAATTAGGATGAGGAGTTATGTATTCATAATGTAGGAATGTCTATCATGTATATAAGAGCAGTGATATTTTTGTTGCTATCAGAGCCTTATGGTGCTTTCGGATGAAGGacgtttttaaatcattttacttttttattgtagtAATTTATCTTTTTGAAACACTAAGGAATCATGCTATGATAATGTGAACCCTCTTCTTGTGAGTGAGAAGAGTAAATCTCTACTGTGATGTCTGTTTGCGATGCTAATAAACTATTGGAATAGTGAAA
>TCONS_00008111
GGGCGTGTGTGCTCGTGTTTTCACATACTTCTCCTTTATACCTCAAGGCTCgagcatcaaaataaagcacTAACACACAAAACGCGGACAATGAGGGGTGCTAGCCGGTCCAAAATCACGCAGAATCTGGATAAGAGAGTATGCATGACAAACTGCCCTACGCTTATAGTAACCGTCGGTCTGCCCGCCAGAGGAAAGACCTACATCTCCAAAAAACTGACACGCTACCTCAACTGGATTGATGTTCCTACGAAAGAGTTTAACGTTGGCCAATACAGACGAGAATGTGTTAAGATCTACAAATCCTTTGAGTTTTTTCGACCAGACAATGAAGAGGGGCTCAAAATCAGGAAGCAGTGTGCACTGGCAGCTCTCAATGATGTCCGGCAGTTCCTCACAGATGAAGGTGGACAGGTGGCGGTTTTTGATGCCACAAACACGACAAGAGAAAGAAGAGACACAATCATCAGATTTGCAGAGCAGAACGGTTTCAAGGTGTTCTTTGTAGAGTCTGTGTGTGAAGACCCTGACGTTATCGCTGAAAACATTGTGCAAGTGAAGCTGGGCAGTCCAGACTACACACACTGTAACACAGAAGAGGCCGTCGCTGACTTTATGAAGAGGATAAAGTGTTATGAGAACTCCTACCAACCCCTGGATGAGGAACTGGACCGggaTCTTTCCTTCATAAAGATCATTGATGTGGGCCGAAGGTACCTAGTGAACCGGGTTCAGGACCACATACAGAGCAGAATAGTTTACTACCTCATGAATATCCACATCACGCCGCGGTCCATCTACTTGTGCCGGCATGGAGAGAGTGATCTGAACATTAAAGGCCGAATCGGAGGAGATTCAGGGCTTTCAGCAAGGGGAAAGAAGTATGCTGAGACTTTGGGTCAGTTTATCCAGTCGCAGAATATTCACGAATTGAAAGTGTGGACGAGTCAGATGAAGAGGACCATACAGACGGCAGAAGCTGTGGGCGTACCGTACGAACAGTGGAAAGCTCTCAATGAGATCGATGCCGGTGTCTGTGAGGAGCTCATGTATGAGGAGATCCAGCAGCGATATCCGCTTGAGTTTGCATTACGGGACCAGGATAAATATCGATACCGCTATCCCAAAGGAGAGTCCTATGAAGACTTGGTCCAGAGGCTGGAACCCGTGATCATGGAGTTAGAAAGGCAGGAAAACGTTCTGGTCATCTGTCATCAAGCCGTCATGAGATGCTTGCTGGCCTACTTTCTGGACAAAACAGCAGAGGAATTGCCTTATCTGAAATGCCCTCTACACACAGTATTGAAGTTAACACCAGTGGCCTATGGTTGCAAGGTGGAGTCGATTGATTTGAAAGTGGAAGCTgtgaacacacacagagacagaccgACGAACGTAGATGTGTCTCGGCTGGCGGAAGAGGCTTTGTTAACAGTACCAGATCATCACTGA

Function

GO:

id name namespace
GO:0045786 negative regulation of cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-051120-51 Predicted to enable 6-phosphofructo-2-kinase activity and fructose-2,6-bisphosphate 2-phosphatase activity. Predicted to be involved in fructose 2,6-bisphosphate metabolic process. Predicted to act upstream of or within fructose metabolic process and phosphorylation. Predicted to be active in cytosol. Orthologous to human PFKFB4 (6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4).

Ensembl:

ensembl_id ENSDARG00000055540

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008834 False 4355 lncRNA 0.36 2 34550847 34577001
TCONS_00008109 False 1524 mRNA 0.48 14 34555036 34577106
TCONS_00008110 False 1977 mRNA 0.44 14 34557302 34572202
TCONS_00008111 True 1452 mRNA 0.48 14 34557787 34577034

Neighbor

gene id symbol gene type direction distance location
XLOC_004248 pik3ca coding downstream 28598 34488869 ~ 34522249 (-)
XLOC_004246 xxylt1 coding downstream 70025 34401460 ~ 34480822 (-)
XLOC_004247 BX548160.2 coding downstream 84334 34466395 ~ 34466513 (-)
XLOC_004244 NA coding downstream 192158 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 coding downstream 195185 34355544 ~ 34355662 (-)
XLOC_004250 mapkapk3 coding upstream 2979 34580085 ~ 34628789 (-)
XLOC_004251 dnah1 coding upstream 56286 34633392 ~ 34720630 (-)
XLOC_004252 chchd4a coding upstream 202504 34779610 ~ 34783938 (-)
XLOC_004253 traip coding upstream 585578 35162684 ~ 35171768 (-)
XLOC_004254 BX293991.1 coding upstream 647916 35225022 ~ 35225139 (-)
XLOC_004063 CR854846.1 misc downstream 18423169 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21859156 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21929080 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21959551 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 22037585 12512966 ~ 12513262 (-)
XLOC_004243 FO681390.1 non-coding downstream 295627 34249456 ~ 34255220 (-)
XLOC_004235 NA non-coding downstream 557700 33992033 ~ 33993147 (-)
XLOC_004255 NA non-coding upstream 860907 35438013 ~ 35441417 (-)
XLOC_004257 NA non-coding upstream 1001624 35578730 ~ 35741444 (-)
XLOC_004264 NA non-coding upstream 1664953 36242059 ~ 36246756 (-)
XLOC_004269 NA non-coding upstream 1907286 36484392 ~ 36687161 (-)

Expression


Co-expression Network