LOC118947704


Basic Information

Item Value
gene id LOC118947704
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493676.1
NCBI id JAAXML020000344.1
chromosome length 856417
location 459740 ~ 461968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041884.1
aaggatggaggaagaggaggatggaggaagaggaggatggagggagaggaggatgggaggaagaggaggatggagggagaggaggaaggagggagaggaggatgggaggaagaggagtatGGCGGAGATGTAGAACCAAGAGAAAACAGTATGTCCACACCTACACCCCTCCCTCTTACCTTTCTCCGCCCCACTGAACAGGAAAGACTGTTGGTGTATGCTTCTTAGTGGACtcttcttcctttctctcctcttagTTCATGCTCCAGTCACTTCACCGTGTCAATGTGTGTTTCCAAATCATAGATTTACtattgtgatgtcactgtgtacacacacacacacagatatgccaCATCTCTCTGGAGTGTGTGTAGTTCTGCACTGTCACAGAATGAAACAGTGATGTCACAAAGTGGAACAGTGATGTCACAGAATGGAACAATGATGTCACAGAATGGAATAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTAAGGTCACAGAATGGAACAGTGATGTCACAGCTAGGGAACTGAGAAGTGTGGAGTTACAGGTCCGATATCCGAGGGGACGGTTTTCAGGTTCACACCgtttcacagacacagacactgaaGCTGCTGAAACAGCttttaaaacaaaaa
>TU2689649
gaggaggatggagggagaggaggatgggaggaagaggaggatggagggagaggaggaaggagggagaggaggatgggaggaagaggagtatGGCGGAGATGTAGAACCAAGAGAAAACAGTATGTCCACACCTACACCCCTCCCTCTTACCTTTCTCCGCCCCACTGAACAGGAAAGACTGTTGGTGTATGCTTCTTAGTGGACtcttcttcctttctctcctcttagTTCATGCTCCAGTCACTTCACCGTGTCAATGTGTGTTTCCAAATCATAGATTTACtattgtgatgtcactgtgtacacacacacacacagatatgccaCATCTCTCTGGAGTGTGTGTAGTTCTGCACTGTCACAGAATGAAACAGTGATGTCACAAAGTGGAACAGTGATGTCACAGAATGGAACAATGATGTCACAGAATGGAATAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTAAGGTCACAGAATGGAACAGTGATGTCACAGCTAGGGAACTGAGAAGTGTGGAGTTACAGGTCCGATATCCGAGGGGACGGTTTTCAGGTTCACACCgtttcacagacacagacactgaaGCTGCTGAAACAGCttttaaaacaaaaacacaagaaGAAGAAGCAAATTCAATTGACTTGATAATCATCTCAgctttggagggagggagggagggagggagggagggaggggaatgtTGTAAGCATTTAAATCATCTCCAGTACgagcctgtctgtctggttgtcaGGGAGACCATTAGCTAGTTTAGTTAGTTTAGTTTGGCATTTGAACCATGTTTGTGTCCTAAAAGgccccctgttccctacatagtgcactactttagaccagagcctcgTAGggctgcatagggaatagggtgagatATAGTCATCCACTCCTCTACTGCCCCCAGACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCGAAACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCGAAACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCCAGACATAACGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCCAGACATAATTTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCGAAACATAACGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCCAACCTTTacggggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactagaATGGCTTTTGTACAGAAGGAACGTTTTACTGTGGTAGCCTCACGTGCGTCTGACATGGCTCCctgttcccgagtggcgcagcggtctaagatactgcatcgtagtgctagaggtgtcaaatccaggctgtatcacatccggctgtgattcccatagggcggtgcacaattggcccagcgtcgtctggtttggccagagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctcgtttaATAGAAATCTATATATTAATATAAAGGGCAGCACTACcctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactacgaatACCTGTtaacatccatctctctctctgtctctccgtcagcaccagagcgagaggggggagagaggagagagagcgatagagaggggacatgtgagggagagagagatagagaaagagagagagagagaccgatagagA
>TU2689650
gaggaggatggagggagaggaggatgggaggaagaggaggatggagggagaggaggaaggagggagaggaggatgggaggaagaggagtatGGCGGAGATGTAGAACCAAGAGAAAACAGTATGTCCACACCTACACCCCTCCCTCTTACCTTTCTCCGCCCCACTGAACAGGAAAGACTGTTGGTGTATGCTTCTTAGTGGACtcttcttcctttctctcctcttagTTCATGCTCCAGTCACTTCACCGTGTCAATGTGTGTTTCCAAATCATAGATTTACtattgtgatgtcactgtgtacacacacacacacagatatgccaCATCTCTCTGGAGTGTGTGTAGTTCTGCACTGTCACAGAATGAAACAGTGATGTCACAAAGTGGAACAGTGATGTCACAGAATGGAACAATGATGTCACAGAATGGAATAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTAAGGTCATAGAATTGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTAAGGTCACAGAATGGAACAGTGATGTCACAGCTAGGGAACTGAGAAGTGTGGAGTTACAGGTCCGATATCCGAGGGGACGGTTTTCAGGTTCACACCgtttcacagacacagacactgaaGCTGCTGAAACAGCttttaaaacaaaaacacaagaaGAAGAAGCAAATTCAATTGACTTGATAATCATCTCAgctttggagggagggagggagggagggagggagggaggggaatgtTGTAAGCATTTAAATCATCTCCAGTACgagcctgtctgtctggttgtcaGGGAGACCATTAGCTAGTTTAGTTAGTTTAGTTTGGCATTTGAACCATGTTTGTGTCCTAAAAGgccccctgttccctacatagtgcactactttagaccagagcctcgTAGggctgcatagggaatagggtgagatATAGTCATCCACTCCTCTACTGCCCCCAGACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCGAAACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCCAGACATAACGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCCAACCTTTacggggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactagaATGGCTTTTGTACAGAAGGAACGTTTTACTGTGGTAGCCTCACGTGCGTCTGACATGGCTCCctgttcccgagtggcgcagcggtctaagatactgcatcgtagtgctagaggtgtcaaatccaggctgtatcacatccggctgtgattcccatagggcggtgcacaattggcccagcgtcgtctggtttggccagagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctcgtttaATAGAAATCTATATATTAATATAAAGGGCAGCACTACcctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactacgaatACCTGTtaacatccatctctctctctgtctctccgtcagcaccagagcgagaggggggagagaggagagagagcgatagagaggggacatgtgagggagagagagatagagaaagagagagagagagaccgatagagA
>TU2689652
gaggaggatggagggagaggaggatgggaggaagaggaggatggagggagaggaggaaggagggagaggaggatgggaggaagaggagtatGGCGGAGATGTAGAACCAAGAGAAAACAGTATGTCCACACCTACACCCCTCCCTCTTACCTTTCTCCGCCCCACTGAACAGGAAAGACTGTTGGTGTATGCTTCTTAGTGGACtcttcttcctttctctcctcttagTTCATGCTCCAGTCACTTCACCGTGTCAATGTGTGTTTCCAAATCATAGATTTACtattgtgatgtcactgtgtacacacacacacacagatatgccaCATCTCTCTGGAGTGTGTGTAGTTCTGCACTGTCACAGAATGAAACAGTGATGTCACAAAGTGGAACAGTGATGTCACAGAATGGAACAATGATGTCACAGAATGGAATAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTAAGGTCACAGAATGGAACAGTGATGTCACAGCTAGGGAACTGAGAAGTGTGGAGTTACAGGTCCGATATCCGAGGGGACGGTTTTCAGGTTCACACCgtttcacagacacagacactgaaGCTGCTGAAACAGCttttaaaacaaaaacacaagaaGAAGAAGCAAATTCAATTGACTTGATAATCATCTCAgctttggagggagggagggagggagggagggagggaggggaatgtTGTAAGCATTTAAATCATCTCCAGTACgagcctgtctgtctggttgtcaGGGAGACCATTAGCTAGTTTAGTTAGTTTAGTTTGGCATTTGAACCATGTTTGTGTCCTAAAAGgccccctgttccctacatagtgcactactttagaccagagcctcgTAGggctgcatagggaatagggtgagatATAGTCATCCACTCCTCTACTGCCCCCAGACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCGAAACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCCAACCTTTacggggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactagaATGGCTTTTGTACAGAAGGAACGTTTTACTGTGGTAGCCTCACGTGCGTCTGACATGGCTCCctgttcccgagtggcgcagcggtctaagatactgcatcgtagtgctagaggtgtcaaatccaggctgtatcacatccggctgtgattcccatagggcggtgcacaattggcccagcgtcgtctggtttggccagagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctcgtttaATAGAAATCTATATATTAATATAAAGGGCAGCACTACcctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactacgaatACCTGTtaacatccatctctctctctgtctctccgtcagcaccagagcgagaggggggagagaggagagagagcgatagagaggggacatgtgagggagagagagatagagaaagagagagagagagaccgatagagA
>TU2689653
gaggaggatggagggagaggaggatgggaggaagaggaggatggagggagaggaggaaggagggagaggaggatgggaggaagaggagtatGGCGGAGATGTAGAACCAAGAGAAAACAGTATGTCCACACCTACACCCCTCCCTCTTACCTTTCTCCGCCCCACTGAACAGGAAAGACTGTTGGTGTATGCTTCTTAGTGGACtcttcttcctttctctcctcttagTTCATGCTCCAGTCACTTCACCGTGTCAATGTGTGTTTCCAAATCATAGATTTACtattgtgatgtcactgtgtacacacacacacacagatatgccaCATCTCTCTGGAGTGTGTGTAGTTCTGCACTGTCACAGAATGAAACAGTGATGTCACAAAGTGGAACAGTGATGTCACAGAATGGAACAATGATGTCACAGAATGGAATAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTGATGTCACAGAATGGAACAGTAAGGTCACAGAATGGAACAGTGATGTCACAGCTAGGGAACTGAGAAGTGTGGAGTTACAGGTCCGATATCCGAGGGGACGGTTTTCAGGTTCACACCgtttcacagacacagacactgaaGCTGCTGAAACAGCttttaaaacaaaaacacaagaaGAAGAAGCAAATTCAATTGACTTGATAATCATCTCAgctttggagggagggagggagggagggagggagggaggggaatgtTGTAAGCATTTAAATCATCTCCAGTACgagcctgtctgtctggttgtcaGGGAGACCATTAGCTAGTTTAGTTAGTTTAGTTTGGCATTTGAACCATGTTTGTGTCCTAAAAGgccccctgttccctacatagtgcactactttagaccagagcctcgTAGggctgcatagggaatagggtgagatATAGTCATCCACTCCTCTACTGCCCCCAGACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCGAAACATAATGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCGAAACATAACGTGTTGTTGCCCTGgaaacaacctctccctgtctactGCCCCCAACCTTTacggggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactagaATGGCTTTTGTACAGAAGGAACGTTTTACTGTGGTAGCCTCACGTGCGTCTGACATGGCTCCctgttcccgagtggcgcagcggtctaagatactgcatcgtagtgctagaggtgtcaaatccaggctgtatcacatccggctgtgattcccatagggcggtgcacaattggcccagcgtcgtctggtttggccagagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctcgtttaATAGAAATCTATATATTAATATAAAGGGCAGCACTACcctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactaccctcagggctctggtctaaagtagtgcactacgaatACCTGTtaacatccatctctctctctgtctctccgtcagcaccagagcgagaggggggagagaggagagagagcgatagagaggggacatgtgagggagagagagatagagaaagagagagagagagaccgatagagA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041884.1 False 699 mRNA 0.47 2 461186 461968
TU2689649 False 2116 lncRNA 0.49 2 459740 461939
TU2689650 False 2044 lncRNA 0.49 3 459740 461939
TU2689652 False 1908 lncRNA 0.49 4 459740 461939
TU2689653 True 1960 lncRNA 0.49 3 459740 461939

Neighbor

gene id symbol gene type direction distance location
LOC118947717 LOC106594941 coding downstream 3631 453119 ~ 457555 (-)
LOC118947711 NA coding downstream 29043 429659 ~ 432143 (-)
LOC118947716 NA coding downstream 34915 419741 ~ 426271 (-)
LOC110511058 NA coding downstream 51436 407674 ~ 409750 (-)
LOC110511057 NA coding downstream 68864 384795 ~ 392322 (-)
LOC110517267 LOC106594732 coding upstream 305 462273 ~ 844971 (-)
LOC118947705 NA coding upstream 255268 717236 ~ 718394 (-)
G2347121 NA non-coding downstream 13166 447685 ~ 448020 (-)
LOC110515504 LOC106594978 non-coding downstream 90698 347816 ~ 371219 (-)
LOC118947712 LOC106594764 non-coding downstream 122402 330695 ~ 339136 (-)
G2346953 LOC106603761 non-coding downstream 161740 298871 ~ 299446 (-)
G2347257 NA non-coding upstream 21188 483156 ~ 483372 (-)
G2347266 NA non-coding upstream 60753 522721 ~ 523424 (-)
G2347279 NA non-coding upstream 85753 547721 ~ 548213 (-)
G2347286 NA non-coding upstream 109757 571725 ~ 572626 (-)
G2347273 NA non-coding upstream 125101 587069 ~ 590516 (-)
LOC118947714 LOC106564023 other downstream 178994 105059 ~ 282192 (-)
G2347341 NA other upstream 294221 756189 ~ 765433 (-)

Expression

LOC118947704 Expression in all Baseline Samples

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LOC118947704 Expression in each Bioproject

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LOC118947704 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network