LOC110510383 (LOC106599923)


Basic Information

Item Value
gene id LOC110510383
gene name LOC106599923
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493677.1
NCBI id JAAXML020000814.1
chromosome length 844186
location 428985 ~ 537123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972743.1
GCGCTGTCATGTATGAAAAATGAACACGTACAAGAGGCGTGGATACATAATTTTAATGAAGAATAAACACCAACAAGAGGCGTGGATACCTACTGCTCATTATTTAAAGGTCGTAGTATTTTTCGGTCTCATTGTAATGAAAAACAACAATTATTAATATACGTTCTTCGTGCATGACAGTGCTTTCCACTTTAATTCCCTGAGCGCGTCGCCGTAGAAACCATCAGTATCACCTCACCTGTGAGCCCGGTTGTTCCCACTGGTTCCTCGTTACCGTAATTTATCAGGGAGCATCGACCAATCAACCCACCTGGGTGAACATGAGTTGAGCGTGTGCCAAACTTCCGAGGACGCGCGCAGTCAGAATCAACAGACGGATGAATCGACGGAACCTGTAGCTCAGACTCATAGCCCAATTAATTCACGGGGAGCTCCAGCGCTACAGAATGCATCAATACGCCAGCCAAGACAAGATTCCTggCGGGGGTGTTGGGCTAGCGGCCCCCCAGGATGGCCAAAGTTCTTGTCAGTTCTTCTCAGATGGTCGGAGGAAGGTGGACTATGTTCTGGTGTTCTACCAACGCAAACAGATCTCTGTGAGGGGTGGCGACCGGCTGCACCGTCTCTCCGCCCCTCCACACCCTCCTCATCGCCTCTCTGTCATCTCCAATGGTAGCTCCCCCCTCTCCGGCCCTGTGGGGGGTGTAGGGCAGGGGGGTTTGGGATGTGCAGCCGGGCAGCGGAGTGCGGGGGACggggaggtgtgtgtggaccTGGCGGTGGAGGTGGAATTAGAGGCGGACCCAGCTGAAGGAGAGATGGTGCTGATCAGGGAGGAGTTTGAGGCCAGGCTACTGGAGGCGGGgcttgagatggagagagacaccgaggtcaGGGTCTACGGGCCCAGCTTCACGAGACTCCATGTCCCCTGGCAGGTCCTGAGCAGAGAGGCAGAGTTCCTCAAGATCAAAGTCCCCACTAAGAAGAGCTATGATCTGAAGCAGGAGAATGGGTTCAGTGCCAGCCTCAGTGAGTTCTGGAGGAAGGTGAACCAGCCGTTCCAACCCAACATCCCCCAGCTAGGCCACAGCACCACTAAGCAGCTCTCACACTGCTTCTCCAGGGACAAACTACACTTATTTAACATCACCTCTAAAGACACGTTCTTTGACAACGCAACACGCAGTCGAATAGTGTACGAGATCCTGAGACGCACCGCCTGCACACGCACCAGCCAATCCATGGgcaTCACCACATTAATAGCTAAAGGTGTCTATGATTCAGCCTTCCCTCTCCATGATGGGGATTATAAGGTCGTGGGTCACTCTGAGAGGAATGACAGACAGCTGCTGCATGATGAGTGGGCCAGATATGGAGCCTTCTACAAATACCAACCTGTGGACCTCATCAGGAAGTACTTTGGGGAGAAGATCGGTCTGTACTTTGCCTGGCTGGGCGTCTACACTCAGCTGCTCATACCAGCCTCTATGGTTGGGATTATCGTCTTCTGCTACGGCTGTTACACTGTGGATATGGACGtacccagcCTGGAGATGTGTGATAAGCAGCAGAACTTCACGATGTGTCCTCTGTGTGACGGAGTGTGTGACTACTGGCACCTGTCCACCGCCTGTGGCACCGCCCGCGCATCCCACCTGTTCGACAACCCTGCCACCGTCTTCTTCGCTATCTTCATGTCCCTCTGGGtTGCGACGTTCCTGGAGCACTGGAAGCGTCGTCAGATCAGTTTGAACCACAGCTGGGACCTCACAGgactagaggaagaggagGACCACCCGAGGCCCAAGTATGAAACCATCCTGCTCCAGAAGAGACAGATGATGAGGAACAAGGAGAAGAAGAacgagaaaaagaagaagaagaagaagattgaGCCTGTGCAGCGGGAGGAGGACGTGGCGGCAGGGAAAGACAGGTGGAGACAGAAGTTACTGTCTGCTATGAACACTGGGACATCGaCAGGTGTGGAGAAGCTGACCTGGAGGGACCGTCTGCCTGGATACCTCATCAACATCTCCTCCATCCTCTTTATGTTTGGGCTGACGTTCTCTGCGGTTTTCGGTGTGATCGTGTATCGTATTGTCGTTTCCGCTCTAATGGCGATGTCACCTGACCCGGAGACCAAGTCTAACGTGCGTGTCACCGTCACGGCAACCGCTGTCATCATCAACCTGGTGGTCATTCTGATACTGGATGAGATCTATGGAGCTGTGGCCGTCTGGCTCACTGAGCTGGaaATTCCAAGGACAGAGAGTAACTTTGAGCAGCATCTGATTCTGAAGGCTTTTCTACTGAAGTTCATGAACGCCTACGCCCCCATATTCTATGTAGCTTTCTTTAAGGGACGgtttgCAGGCAGGCCGGGAGACTACGTCTATGTTTTTAATGACTACCGGATGGAGGAGtgtgCCCCTGGAGGTTGTTTAATAGAGTTATGTATTCAGCTCAGCATCATCATGGTGGGGAAACAACTCATTCAGAACAATGTATTTGAGATCGGCATCCCTAAGTTGAAGAAATTGATCCGAGCATGGAAGGGTAAGGGGATTtcattggaggagagagaggagcagcgtGCCAGACCTCCTCAACAGTGGAACCTCGACTACACCCTGGTCCCCTTTGAAGGACTGACCCCCGAGTACATGGAGATGATTATCCAGTTTGGTTTTGTTTCTCTGTTTGTCGCGTCGTTCCCTCTGGCTCCTCTCTTCGCTCTTCTCAACAACGTGATCGAGATCCGCCTCGATGCCAAGAAGTTTGTCACCGAGCTGCGACGACCGGACGCTGTCCAAGCCAAAGACATCGgaatcTGGTACAACATCCTGAGTGGAATGGGAAAGTTCTCTGTCATTATAAATgcGTTCGTGATCTCGTTTACCTCAGACTTCATTCCCAGGCTGGTGTACCAGTACATGTACAGTCAGACAGGCACCATGCACGGCTTCATAGACCACACCCTCTCTCACTTCAACGTGTCCAACTTCAGACCCGGCAACGCCCCCACCTCCTCATACCTCTCTGAGACCACCGTCTGCAGGTATAAGGACTACAGAGAGCCTCCATGGTCAGCTGAAGCCTACCAGTTCTCTAAAACCTACTGGGCTGTCCTTGCTGCCAGACTGGCCTTCGTCATCCTGTTCCAGAACCTGGTGATGTTCCTGAGCCTGCTGGTTGCCTGGGTGATCCCAGACGTACCGAAGAACATCAGTGAGCagctgaagagagagaagactctgCTGGTGGACGTGTTCCTccgggaggagaaggagaagttcCACCTCCTCCAGAGCCTCTTTTCCTCCAAGGACCTGCCCAGCCAGGGTCACCCCGACACGGCCCACTTCCGTACTCTACCCCTAGGCCTCTCTCAGGGCCTAGGCCAGCCCCCGGGCGGAGAGGGAGGGGAATCCCGGGTGAGATGCAGGGCTGCCAGTTTCAGCCAGTTCACCAGACAGATGTCCATGTCTCCTAGCAACAACGCAGGCCGACAGATGTCCATGTCTCCTAGCAACGACGCAGCCCGACACACAGCGGTCTGACACGCTGCTGTAGCGGTTGGATACAAACGATCTTTATCCCCACAGGAGAAGTTCAGACACTAGTGTGGTAGCTACATGGAGTCTGAATgctcctctgtatctctcacccATGTAGACTTGGTGTTCTCTTTCTGAAGCAGTGTGATGCTGGAACATACTGATCATGGATTTGTTCTTCTGGCCGGATAATCTACATATTCTTGACCATTGTATGTTAATCTGCATGATGAGaagtgactgtatagttcccttaaggaaaaacACCTTCAGCCTGACGGTCTTCTCTgagagagcttcccatgtctggaacacACATGGAGCTGCTGTTTACGGTACCTTCACCAATAACCTAAAGACATGGCTAACGGACAGTCAGGTGTGTCAACACCATCCCCAGCTGTGTAGACCTGCATGTTGTCTGCTATACAGTGTTGGCTCTTTTTCTGTCATGCTGTTTGGTTGCTTTTTGTGTTGTTGCTTTCTGTCTGTGTTAAGTGTTACTGGtcatatgttgctctgtctgtctgtctgtgtctctgtctgtgtgttacaggtcatatgttgctctgtctgtctgtgtctctgtctgtctgtgtgttacagGTCATATGTTGCTCTGTCTATGTTACTGGttatatgttgctctgtctgtctgtgtctgtctgtctgtgtgttacagGTCATATGTTGCTCTGTCTATGTTACTGGttatatgttgctctgtctgtctgtgtctctgtctgtctgtgtgttacagGTCATATGTTGCTCTGTCTATGTTACTGGttatatgttgctctgtctgtctgtgt
>XR_005041890.1
GCGCTGTCATGTATGAAAAATGAACACGTACAAGAGGCGTGGATACATAATTTTAATGAAGAATAAACACCAACAAGAGGCGTGGATACCTACTGCTCATTATTTAAAGGTCGTAGTATTTTTCGGTCTCATTGTAATGAAAAACAACAATTATTAATATACGTTCTTCGTGCATGACAGTGCTTTCCACTTTAATTCCCTGAGCGCGTCGCCGTAGAAACCATCAGTATCACCTCACCTGTGAGCCCGGTTGTTCCCACTGGTTCCTCGTTACCGTAATTTATCAGGGAGCATCGACCAATCAACCCACCTGGGTGAACATGAGTTGAGCGTGTGCCAAACTTCCGAGGACGCGCGCAGTCAGAATCAACAGACGGATGAATCGACGGAACCTGTAGCTCAGACTCATAGCCCAATTAATTCACGGGGAGCTCCAGGTAGACTATAGTTTGATAGGTATCTAGATGAAACATGTGTGTAGGCCATAGCCTACTAATCTTGAGTCCCCTGCCAAGTGAGAGGCGCGTCGCTTGGCTCCCCCAAATTGACGGATTACCGAGATGCGCGTGCTGATAATGATGAGTTCTGCGCGtacagctgctgctactattcCGTTATTATTCTCCTCCCGGTCTAACGACACCGTTCCTTTATTCTCCTGTCTGTGTTTGTAGCGCTACAGAATGCATCAATACGCCAGCCAAGACAAGATTCCTggCGGGGGTGTTGGGCTAGCGGCCCCCCAGGATGGCCAAAGTTCTTGTCAGTTCTTCTCAGATGGTCGGAGGAAGGTGGACTATGTTCTGGTGTTCTACCAACGCAAACAGATCTCTGTGAGGGGTGGCGACCGGCTGCACCGTCTCTCCGCCCCTCCACACCCTCCTCATCGCCTCTCTGTCATCTCCAATGGTAGCTCCCCCCTCTCCGGCCCTGTGGGGGGTGTAGGGCAGGGGGGTTTGGGATGTGCAGCCGGGCAGCGGAGTGCGGGGGACggggaggtgtgtgtggaccTGGCGGTGGAGGTGGAATTAGAGGCGGACCCAGCTGAAGGAGAGATGGTGCTGATCAGGGAGGAGTTTGAGGCCAGGCTACTGGAGGCGGGgcttgagatggagagagacaccgaggtcaGGGTCTACGGGCCCAGCTTCACGAGACTCCATGTCCCCTGGCAGGTCCTGAGCAGAGAGGCAGAGTTCCTCAAGATCAAAGTCCCCACTAAGAAGAGCTATGATCTGAAGCAGGAGAATGGGTTCAGTGCCAGCCTCAGTGAGTTCTGGAGGAAGGTGAACCAGCCGTTCCAACCCAACATCCCCCAGCTAGGCCACAGCACCACTAAGCAGCTCTCACACTGCTTCTCCAGGGACAAACTACACTTATTTAACATCACCTCTAAAGACACGTTCTTTGACAACGCAACACGCAGTCGAATAGTGTACGAGATCCTGAGACGCACCGCCTGCACACGCACCAGCCAATCCATGGgcaTCACCACATTAATAGCTAAAGGTGTCTATGATTCAGCCTTCCCTCTCCATGATGGGGATTATAAGGTCGTGGGTCACTCTGAGAGGAATGACAGACAGCTGCTGCATGATGAGTGGGCCAGATATGGAGCCTTCTACAAATACCAACCTGTGGACCTCATCAGGAAGTACTTTGGGGAGAAGATCGGTCTGTACTTTGCCTGGCTGGGCGTCTACACTCAGCTGCTCATACCAGCCTCTATGGTTGGGATTATCGTCTTCTGCTACGGCTGTTACACTGTGGATATGGACGtacccagcCTGGAGATGTGTGATAAGCAGCAGAACTTCACGATGTGTCCTCTGTGTGACGGAGTGTGTGACTACTGGCACCTGTCCACCGCCTGTGGCACCGCCCGCGCATCCCACCTGTTCGACAACCCTGCCACCGTCTTCTTCGCTATCTTCATGTCCCTCTGGGtTGCGACGTTCCTGGAGCACTGGAAGCGTCGTCAGATCAGTTTGAACCACAGCTGGGACCTCACAGgactagaggaagaggagGACCACCCGAGGCCCAAGTATGAAACCATCCTGCTCCAGAAGAGACAGATGATGAGGAACAAGGAGAAGAAGAacgagaaaaagaagaagaagaagaagattgaGCCTGTGCAGCGGGAGGAGGACGTGGCGGCAGGGAAAGACAGGTGGAGACAGAAGTTACTGTCTGCTATGAACACTGGGACATCGaCAGGTGTGGAGAAGCTGACCTGGAGGGACCGTCTGCCTGGATACCTCATCAACATCTCCTCCATCCTCTTTATGTTTGGGCTGACGTTCTCTGCGGTTTTCGGTGTGATCGTGTATCGTATTGTCGTTTCCGCTCTAATGGCGATGTCACCTGACCCGGAGACCAAGTCTAACGTGCGTGTCACCGTCACGGCAACCGCTGTCATCATCAACCTGGTGGTCATTCTGATACTGGATGAGATCTATGGAGCTGTGGCCGTCTGGCTCACTGAGCTGGaaATTCCAAGGACAGAGAGTAACTTTGAGCAGCATCTGATTCTGAAGGCTTTTCTACTGAAGTTCATGAACGCCTACGCCCCCATATTCTATGTAGCTTTCTTTAAGGGACGgtttgCAGGCAGGCCGGGAGACTACGTCTATGTTTTTAATGACTACCGGATGGAGGAGtgtgCCCCTGGAGGTTGTTTAATAGAGTTATGTATTCAGCTCAGCATCATCATGGTGGGGAAACAACTCATTCAGAACAATGTATTTGAGATCGGCATCCCTAAGTTGAAGAAATTGATCCGAGCATGGAAGGGTAAGGGGATTtcattggaggagagagaggagcagcgtGCCAGACCTCCTCAACAGTGGAACCTCGACTACACCCTGGTCCCCTTTGAAGGACTGACCCCCGAGTACATGGAGATGATTATCCAGTTTGGTTTTGTTTCTCTGTTTGTCGCGTCGTTCCCTCTGGCTCCTCTCTTCGCTCTTCTCAACAACGTGATCGAGATCCGCCTCGATGCCAAGAAGTTTGTCACCGAGCTGCGACGACCGGACGCTGTCCAAGCCAAAGACATCGgaatcTGGTACAACATCCTGAGTGGAATGGGAAAGTTCTCTGTCATTATAAATgcGTTCGTGATCTCGTTTACCTCAGACTTCATTCCCAGGCTGGTGTACCAGTACATGTACAGTCAGACAGGCACCATGCACGGCTTCATAGACCACACCCTCTCTCACTTCAACGTGTCCAACTTCAGACCCGGCAACGCCCCCACCTCCTCATACCTCTCTGAGACCACCGTCTGCAGGTATAAGGACTACAGAGAGCCTCCATGGTCAGCTGAAGCCTACCAGTTCTCTAAAACCTACTGGGCTGTCCTTGCTGCCAGACTGGCCTTCGTCATCCTGTTCCAGAACCTGGTGATGTTCCTGAGCCTGCTGGTTGCCTGGGTGATCCCAGACGTACCGAAGAACATCAGTGAGCagctgaagagagagaagactctgCTGGTGGACGTGTTCCTccgggaggagaaggagaagttcCACCTCCTCCAGAGCCTCTTTTCCTCCAAGGACCTGCCCAGCCAGGGTCACCCCGACACGGCCCACTTCCGTACTCTACCCCTAGGCCTCTCTCAGGGCCTAGGCCAGCCCCCGGGCGGAGAGGGAGGGGAATCCCGGGTGAGATGCAGGGCTGCCAGTTTCAGCCAGTTCACCAGACAGATGTCCATGTCTCCTAGCAACAACGCAGGCCGACAGATGTCCATGTCTCCTAGCAACGACGCAGCCCGACACACAGCGGTCTGACACGCTGCTGTAGCGGTTGGATACAAACGATCTTTATCCCCACAGGAGAAGTTCAGACACTAGTGTGGTAGCTACATGGAGTCTGAATgctcctctgtatctctcacccATGTAGACTTGGTGTTCTCTTTCTGAAGCAGTGTGATGCTGGAACATACTGATCATGGATTTGTTCTTCTGGCCGGATAATCTACATATTCTTGACCATTGTATGTTAATCTGCATGATGAGaagtgactgtatagttcccttaaggaaaaacACCTTCAGCCTGACGGTCTTCTCTgagagagcttcccatgtctggaacacACATGGAGCTGCTGTTTACGGTACCTTCACCAATAACCTAAAGACATGGCTAACGGACAGTCAGGTGTGTCAACACCATCCCCAGCTGTGTAGACCTGCATGTTGTCTGCTATACAGTGTTGGCTCTTTTTCTGTCATGCTGTTTGGTTGCTTTTTGTGTTGTTGCTTTCTGTCTGTGTTAAGTGTTACTGGtcatatgttgctctgtctgtctgtctgtgtctctgtctgtgtgttacagGTCATATGTTGCTCTGTCTATGTTACTGGttatatgttgctctgtctgtctgtgtctctgtctgtctgtgtgttacagGTCATATGTTGCTCTGTCTATGTTACTGGttatatgttgctctgtctgtctgtgt
>TU2690046
AGGTGGAATTAGAGGCGGACCCAGCTGAAGGAGAGATGGTGCTGATCAGGGAGGAGTTTGAGGCCAGGCTACTGGAGGCGGGgcttgagatggagagagacaccgaggtcaGGGTCTACGGGCCCAGCTTCACGAGACTCCATGTCCCCTGGCAGGTCCTGAGCAGAGAGGCAGAGTTCCTCAAGATCAAAGTCCCCACTAAGAAGAGCTATGATCTGAAGCAGGAGAATGGGTTCAGTGCCAGCCTCAGTGAGTTCTGGAGGAAGGTGAACCAGCCGTTCCAACCCAACATCCCCCAGCTAGGCCACAGCACCACTAAGCAGCTCTCACACTGCTTCTCCAGGGACAAACTACACTTATTTAACATCACCTCTAAAGACACGTTCTTTGACAACGCAACACGCAGTCGAATAGTGTACGAGATCCTGAGACGCACCGCCTGCACACGCACCAGCCAATCCATGGgcaTCACCACATTAATAGCTAAAGGTGTCTATGATTCAGCCTTCCCTCTCCATGATG
>TU2690047
AGGTGGAATTAGAGGCGGACCCAGCTGAAGGAGAGATGGTGCTGATCAGGGAGGAGTTTGAGGCCAGGCTACTGGAGGCGGGgcttgagatggagagagacaccgaggtcaGGGTCTACGGGCCCAGCTTCACGAGACTCCATGTCCCCTGGCAGGTCCTGAGCAGAGAGGCAGAGTTCCTCAAGATCAAAGTCCCCACTAAGAAGAGCTATGATCTGAAGCAGGAGAATGGGTTCAGTGCCAGCCTCAGTGAGTTCTGGAGGAAGGTGAACCAGCCGTTCCAACCCAACATCCCCCAGCTAGGCCACAGCACCACTAAGCAGCTCTCACACTGCTTCTCCAGGGACAAACTACACTTATTTAACATCACCTCTAAAGACACGTTCTTTGACAACGCAACACGCAGTCGAATAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972743.1 False 4378 mRNA 0.52 26 428985 537123
XR_005041890.1 False 4489 mRNA 0.52 26 428985 537123
TU2690046 False 522 TUCP 0.54 6 436692 463688
TU2690047 True 414 TUCP 0.54 4 436692 448918
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110513589 cwf19l1 coding upstream 70376 324459 ~ 358609 (+)
tmem243b tmem243 coding upstream 148052 262919 ~ 280933 (+)
meig1 meig1 coding upstream 167345 259616 ~ 261765 (+)
hspa14 LOC100380711 coding upstream 201517 207731 ~ 227468 (+)
LOC110515991 NA coding downstream 286 537409 ~ 539238 (+)
G2347531 NA non-coding upstream 46288 382016 ~ 382697 (+)
G2347527 LOC106595881 non-coding upstream 61915 360674 ~ 367070 (+)
G2347513 NA non-coding upstream 74592 301170 ~ 354393 (+)
G2347525 NA non-coding upstream 78311 349720 ~ 350674 (+)
G2347524 NA non-coding upstream 80475 347930 ~ 348510 (+)
G2347768 NA non-coding downstream 11604 548727 ~ 560553 (+)
G2347769 NA non-coding downstream 15771 552894 ~ 555609 (+)
G2347781 NA non-coding downstream 31957 569080 ~ 570436 (+)
G2347782 NA non-coding downstream 34780 571903 ~ 573281 (+)
G2347786 NA non-coding downstream 48275 585398 ~ 585603 (+)
G2347419 LOC106591916 other upstream 363046 65437 ~ 65939 (+)
G2347818 NA other downstream 103375 640498 ~ 643107 (+)
G2347558 NA non-coding downstream 17095 480783 ~ 484729 (+)

Expression

LOC110510383(LOC106599923) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110510383(LOC106599923) Expression in each Bioproject

Bar chart with 20 bars.
LOC110510383(LOC106599923) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network