LOC110486843 (LOC106601652)


Basic Information

Item Value
gene id LOC110486843
gene name LOC106601652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493685.1
NCBI id JAAXML020000486.1
chromosome length 631356
location 382082 ~ 383642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558667.2
CCTTACGACGTCATATTTGTAATCAGGTTGAGTTTGTAATATATATGCACTGATTTAGCTTCATTGTAATATTTATATAATGCATTTATTTCGTATCGAAATATCTCATATTTTTGAATGAACTTTTATTATGTAACACGTCAACTTTTTTTGTCCACTCTGGGATACCGTACGTTTGACAGGTTTGTTCAAGGAAGCTGCAGCGGGCAAAGGTCGTTTTGATGGTAAGAACTGCTTCGGGCAGCTGTAGACTTGACAATATTTCTTTACAATGACTTCACGAAATATATCTCGATTTTGGGAGTGGGGAAAGAAGATCATCTGTGTTGGAAGGAACTACGCCGACCATGCAAAGGAGCTGAATAACGTCGTCCCAACAGAGCCCGTGTTGTTCCTGAAGACTCCATCTGCATATCTGACAGAGGGCTCACCTATCCTCATTCCCAAATACTCCAACAGTGTACACCATGAAATCGAGTTGGGGGTGGTCATCGGGAAAGGAGGCACCGCTATCCCCCAATCCTCCGCGATGCAACACGTCGCAGGGTACGCCCTGTGTTTGGATATGACAGCTCGGGACGTCCAGGATGACTGCAAGTCTAAAGGTCTTCCGTGGACTCTGGCCAAAGCGTTCAACACATCTTGTCCCGTCAGTGAATTCATCCCCAAAGAGCGGATACCCGACCCGGGAAACGTGAAGATCTGGCTCAATGTGAACGGCCAGATGCGCCAGAATGGCTGCACCTCTCAGATGATTTTCTCCATTCCCTTTCTCATCAGCTACATCAGTGAGATCATCACCCTAGAAGAGGGGGATCTGATTCTCACAGGGACTCCCAAGGGTGTATCCGCTGTGCAGGTGCACGATGAACTACATGCTGGCATAGATGATGTTGTCAGCATGACTTTTAAAGTTGGCAGACTTTGACAGATCATTAGCAAACTCTTAAAATCTGTGTTGTATGGTACATTTCTGTAATTTGCTTTTAATCAGAGCAGAGAGCTGGATGAAATGTATGGAATTACACTAGAGTCATTAGGCAGGCCTATTTCATGCAGAATGGCCACACTGATCAAGTACATTGTTGCATTTCTGAAACCAGCAGAGGGCAGTGCTTACTCAAAGATTCTAATACAGAATTACAATGTAGCCTATTAGActaaaaaaatgtattgatttTACAATGGGAAATATGATAGATACAAAACTTGAAGTCTTGTTTTGAATTTCTGGTCCAGTAGATTTCACTAAATCAGATGCTCAATAAGTGGGCCAGGTGCTGATCTTAATCTTATCCTGACCTATTGTTGTTTTCTGCTCTAGACAACAGCCTCTGCCACAGCACATCACTGTGATCACAGTTAGAATGTTCGCCTTAAAAAATCTTGTCTTTTTCTCCTGTTTGTGAGGAACATTGCCCATGGCATTTTGAACTCCTGTCTACTCTACTATGAATAGGAAAAACAATCATGGGATTTTTCTCTTACAGATCCAATCCTCTTCAAAGCCAAATCAGCCTGAAGAagtagtcatattaaacatttacAGCCTGTTAATTTA

Function

NR:

description
acylpyruvase FAHD1, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01557 FAHD1; acylpyruvate hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558667.2 True 1561 mRNA 0.42 1 382082 383642

Neighbor

gene id symbol gene type direction distance location
LOC118947904 LOC106606697 coding upstream 5412 389054 ~ 400830 (-)
LOC110486835 LOC106606695 coding upstream 17262 400904 ~ 418520 (-)
LOC118947907 LOC106606653 coding upstream 129964 513606 ~ 522862 (-)
LOC110486820 LOC106606690 coding upstream 139680 523322 ~ 568570 (-)
LOC110486817 LOC106601768 coding upstream 209814 593456 ~ 604197 (-)
G2350577 NA non-coding downstream 52844 328314 ~ 329238 (-)
G2350575 NA non-coding downstream 55519 325859 ~ 326563 (-)
G2350574 NA non-coding downstream 56810 324691 ~ 325272 (-)
G2350572 NA non-coding downstream 66557 315311 ~ 315525 (-)
G2350555 NA non-coding downstream 117843 263146 ~ 264239 (-)
G2350618 NA non-coding upstream 40223 423865 ~ 424470 (-)
G2350622 LOC106606694 non-coding upstream 51140 434782 ~ 435028 (-)
G2350623 LOC106601785 non-coding upstream 51747 435389 ~ 435669 (-)
G2350625 NA non-coding upstream 53363 437005 ~ 437311 (-)
G2350656 NA non-coding upstream 110373 494015 ~ 506260 (-)
G2350578 NA other downstream 50745 330712 ~ 331337 (-)
G2350576 NA other downstream 51445 327477 ~ 330637 (-)
G2350264 LOC106606649 other downstream 281067 100617 ~ 101015 (-)
G2350619 e4f1 other upstream 44609 428251 ~ 429561 (-)
G2350673 LOC106606689 other upstream 126270 509912 ~ 510609 (-)
G2350665 NA other upstream 150597 534239 ~ 535381 (-)

Expression


Co-expression Network