LOC110486835 (LOC106606695)


Basic Information

Item Value
gene id LOC110486835
gene name LOC106606695
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493685.1
NCBI id JAAXML020000486.1
chromosome length 631356
location 400904 ~ 418520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972965.1
GGGTAGTGTGTGTGACGAGGTACCACTAGTGTAACGCGGAAGTTCGTTGAAAGTTGTCGTGCATTTCGTGTACAGTAGACCTTCCACAACATTCGGTGTTCAAGTTCCTTTTTTCCCCGGGAATTGTAAATGCGGAAACATTAGGACAACAAACTACATGCACGCTCTTCACTGGCGGAAGCACCATGGTAACAAAAAGGCAGGCCCTCAGAGCTGTTGTACTTTGTCTGGTGCTTGTTGCTGCTGTCAAACTTCTGCTTTCGGAATACAGAACTGAAAGGAAACAGAAGTTGGCCACCATGGATCCTGGCTCATTTTGGCATCAGGTGCCAAAGGTGAAGGAGGCTGTTACTGTACACAAGTCAGAGGATATAAACTCTTTGTTTAACTGGGCCCAGAAACCAGAGGTTCCAGAGCCTCCAGTAAAAAAAGAAGCAGGCACAGCACCTCTGGAAACCAGCAAAGGCCCTGCAAGAATAGTGCACCTGGATCTGAAAGGTGCTGCACCCAAAGTCAAATACATGAAGCAGatcttccccctcttctcctctctgggtGCTGATGGTGTTCTGCTAGAGTACGAGGACATGTTTCCCTATCATGGAAACCTGACGATTCTCAGGTCACCGTATGCCTACAGTATGGAAGATATAGAGGAGATAAAGAGCCTAGCCAAACTCAACAAGCTGGAACTGATTCCTTTAGTGCAAGTGTTTGGACACCTCGAGTTTGTGTTGAAGCATGAGAGGTATTTCCACCTGAGGGAGGTGAGTGCTTTCCCTAACAGTCTGAACCCCCACCACCCTGGCTCTGTGGCTCTGGTCAAGGACATGGTCTCCCAGGTCATGGACTGTCACCCTGACGCACGCTGGTTCCACATGGGGGCTGATGAGGTAAGGGGTCTGGGAGAGAGCCAGGACTCTAAAAACTGGTTACATAGCAATAAGGGGGATGTTGGGAAAATGTTCCTGAACCATGCAGTGTCATTGGCCCGTTTCATCACAGAGagaaggtcaggggtcagagtgaTTCTGTGGGATGACATGTTGAGGAAGATCAGCCCTGCCACTATTAAAGAGTCAGGCCTGCAGGATCTTGCTTCCCCAACAATATGGAACTATTTGAAGAAAATGGATACAGATGGTATTGGAACATTGATATCTAGATACCATGAGGCCGGTTTCAAGGGTATATGGTTCGCCAGTGCATTTAAAGGGGGCACAGGTATTGACCAGCGATGGACCCCTCTTGACTATCAGCTACAGAACCATCTGTCCTGGATAAAGGTCATGAACTCTATGACCAAATACCCCTCCATAACCCTCCATGGCATCCTGCTAACAGGATGGCAGAGGTTTGAGCACCATACCGTGTTGTGTGAACTCCTCCCAGTTGGCATTCCCTCCCTGGCTATGTGTCTACAGAGCTTAAAGCATGGTGCATTTGATGAAAATGCAAAGATGGAGGCTCACCACATACTGGGCTGCAACATCAAGGTGGAGAAAGATATCTGTGAGGGGAGTGGAGCCTTCTCAGGCTCTCAGATCTACCACATGGTGTTTTACATTCACACAAACCTGCAGAAGGAGGTGGAGGCCCTCATGAAACACTACCACATCAAAGGGGGTTTCAGTCGCTACCACAGAAAATATAATTTTGCAAATCCAAGAATTATAGGATTCTTCCAAGGTCGGCTGAAGAAACTGTTGGATAAGTGGGAGACGTACATAGAGAACTTCCGTATGGAGATGGAGGCTATCTACTTCCCAGACACAGTGGAGGAGTGGATGGAGGAGAATGTCAACGCCAACATGGATCTACTGAGAGAGAACGCCCGGGATGCCGAGCGAATCCTAAAACTGAACGGACAGCCCAAGTCACTGAAGACCTTATAGTGACTGGTCTTGTACAGTCTCCAGACCTGATGCCGTTGGGTTGTAACTTTGCACATAGTACCTGTTGATGGTATGTCTAAAGGAGTTTTTCAAGACCGTGTGACTTGACCAGGAAATACTCTGGACCATAGTTATGCTGGTGCTAGTTGTAGCCTGGAACTAGGGTCCACAATTTGGTTCTCTGGCTTTACAAGCCATTTACTGTTTGATTGTGCTGAATAGTAACGTGTCACATGGCTCATATTTACATTGCAAATCATCAGCTCTTTGTATACAGTATGGTAGCAGAATCTGCACTGAATCTGTTTCTTTGTATGTTtgttttcctgtttgtttatTTGTAGAGGGGAGTTCTGATGAGAATGACATTCTGTTATAACACTGTCTGTATTGCATTATCATTATAGGTTTCCTGTATATGTTTTTTCTAGATCCTCCCTGTTGCCACATAATGATGCAGCTAAGGGTTTTGCCAGTAACCATGGCAAAATATGTTTTTACTGCTTGGAATTTTAGCATGAGGGCCTTGGATGGTCTATGAGTTATGAGCAGATATAAATTAATTATTAAGTGTATGCTTGAATATGAAGACTACAGAAAGGAACACTGATCCTGTTATGATCAAATTGCACTGTAAGATTCATGCAGTCTATATTTTACTGCAATGTTAACATGCCTTTACATGCCTTTAGAGCGTAGCTCTTTATGTTCTATTGATATGCTGCTGCACAGTCTCAGGTTAAAACACTGTCTGATTGTACAACATTGTTGAACATTGGTCATTACAAATTAATTGTGCAGTCATTACAAATGGAAGATTGTGTATTTTGCGCATATTAGTTGATTATGCTTGATTATCAAGTTTTTAActtgattattgttattttattgttaatACTTGATATTTTCTTTAAAGAGGAGCTCTGACAGTTCCCTGGATGTGTAGGTTATGGTATCATATTTCAAGTTTTGGTCACCTTTGGTTTCCTTTATCATAGCCTAAAAAGTACATTGATTCATAGATTTATATGATTTGATTCTGGTATGTGAATTCTGAGAGCTTAAATAAATGGGGTTCATACGCa
>XM_036972966.1
TCATAGGACGACTTGGATTTTGAATTATGCGTTTTACCAGATTTTGGTAAAAATTGGCCAACTCTAATGTCTGAAATTATCATGCGCAGGATTTAAATAAATATTATCAAGAATTTGCAAAATATTCCAGAATTGGATATATATCACGACATGTCTGCTCTACAATCGGAAGCACCATGGTAACAAAAAGGCAGGCCCTCAGAGCTGTTGTACTTTGTCTGGTGCTTGTTGCTGCTGTCAAACTTCTGCTTTCGGAATACAGAACTGAAAGGAAACAGAAGTTGGCCACCATGGATCCTGGCTCATTTTGGCATCAGGTGCCAAAGGTGAAGGAGGCTGTTACTGTACACAAGTCAGAGGATATAAACTCTTTGTTTAACTGGGCCCAGAAACCAGAGGTTCCAGAGCCTCCAGTAAAAAAAGAAGCAGGCACAGCACCTCTGGAAACCAGCAAAGGCCCTGCAAGAATAGTGCACCTGGATCTGAAAGGTGCTGCACCCAAAGTCAAATACATGAAGCAGatcttccccctcttctcctctctgggtGCTGATGGTGTTCTGCTAGAGTACGAGGACATGTTTCCCTATCATGGAAACCTGACGATTCTCAGGTCACCGTATGCCTACAGTATGGAAGATATAGAGGAGATAAAGAGCCTAGCCAAACTCAACAAGCTGGAACTGATTCCTTTAGTGCAAGTGTTTGGACACCTCGAGTTTGTGTTGAAGCATGAGAGGTATTTCCACCTGAGGGAGGTGAGTGCTTTCCCTAACAGTCTGAACCCCCACCACCCTGGCTCTGTGGCTCTGGTCAAGGACATGGTCTCCCAGGTCATGGACTGTCACCCTGACGCACGCTGGTTCCACATGGGGGCTGATGAGGTAAGGGGTCTGGGAGAGAGCCAGGACTCTAAAAACTGGTTACATAGCAATAAGGGGGATGTTGGGAAAATGTTCCTGAACCATGCAGTGTCATTGGCCCGTTTCATCACAGAGagaaggtcaggggtcagagtgaTTCTGTGGGATGACATGTTGAGGAAGATCAGCCCTGCCACTATTAAAGAGTCAGGCCTGCAGGATCTTGCTTCCCCAACAATATGGAACTATTTGAAGAAAATGGATACAGATGGTATTGGAACATTGATATCTAGATACCATGAGGCCGGTTTCAAGGGTATATGGTTCGCCAGTGCATTTAAAGGGGGCACAGGTATTGACCAGCGATGGACCCCTCTTGACTATCAGCTACAGAACCATCTGTCCTGGATAAAGGTCATGAACTCTATGACCAAATACCCCTCCATAACCCTCCATGGCATCCTGCTAACAGGATGGCAGAGGTTTGAGCACCATACCGTGTTGTGTGAACTCCTCCCAGTTGGCATTCCCTCCCTGGCTATGTGTCTACAGAGCTTAAAGCATGGTGCATTTGATGAAAATGCAAAGATGGAGGCTCACCACATACTGGGCTGCAACATCAAGGTGGAGAAAGATATCTGTGAGGGGAGTGGAGCCTTCTCAGGCTCTCAGATCTACCACATGGTGTTTTACATTCACACAAACCTGCAGAAGGAGGTGGAGGCCCTCATGAAACACTACCACATCAAAGGGGGTTTCAGTCGCTACCACAGAAAATATAATTTTGCAAATCCAAGAATTATAGGATTCTTCCAAGGTCGGCTGAAGAAACTGTTGGATAAGTGGGAGACGTACATAGAGAACTTCCGTATGGAGATGGAGGCTATCTACTTCCCAGACACAGTGGAGGAGTGGATGGAGGAGAATGTCAACGCCAACATGGATCTACTGAGAGAGAACGCCCGGGATGCCGAGCGAATCCTAAAACTGAACGGACAGCCCAAGTCACTGAAGACCTTATAGTGACTGGTCTTGTACAGTCTCCAGACCTGATGCCGTTGGGTTGTAACTTTGCACATAGTACCTGTTGATGGTATGTCTAAAGGAGTTTTTCAAGACCGTGTGACTTGACCAGGAAATACTCTGGACCATAGTTATGCTGGTGCTAGTTGTAGCCTGGAACTAGGGTCCACAATTTGGTTCTCTGGCTTTACAAGCCATTTACTGTTTGATTGTGCTGAATAGTAACGTGTCACATGGCTCATATTTACATTGCAAATCATCAGCTCTTTGTATACAGTATGGTAGCAGAATCTGCACTGAATCTGTTTCTTTGTATGTTtgttttcctgtttgtttatTTGTAGAGGGGAGTTCTGATGAGAATGACATTCTGTTATAACACTGTCTGTATTGCATTATCATTATAGGTTTCCTGTATATGTTTTTTCTAGATCCTCCCTGTTGCCACATAATGATGCAGCTAAGGGTTTTGCCAGTAACCATGGCAAAATATGTTTTTACTGCTTGGAATTTTAGCATGAGGGCCTTGGATGGTCTATGAGTTATGAGCAGATATAAATTAATTATTAAGTGTATGCTTGAATATGAAGACTACAGAAAGGAACACTGATCCTGTTATGATCAAATTGCACTGTAAGATTCATGCAGTCTATATTTTACTGCAATGTTAACATGCCTTTACATGCCTTTAGAGCGTAGCTCTTTATGTTCTATTGATATGCTGCTGCACAGTCTCAGGTTAAAACACTGTCTGATTGTACAACATTGTTGAACATTGGTCATTACAAATTAATTGTGCAGTCATTACAAATGGAAGATTGTGTATTTTGCGCATATTAGTTGATTATGCTTGATTATCAAGTTTTTAActtgattattgttattttattgttaatACTTGATATTTTCTTTAAAGAGGAGCTCTGACAGTTCCCTGGATGTGTAGGTTATGGTATCATATTTCAAGTTTTGGTCACCTTTGGTTTCCTTTATCATAGCCTAAAAAGTACATTGATTCATAGATTTATATGATTTGATTCTGGTATGTGAATTCTGAGAGCTTAAATAAATGGGGTTCATACGCa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K14459 HEX; hexosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972965.1 False 2980 mRNA 0.44 14 400904 417902
XM_036972966.1 True 2971 mRNA 0.43 14 400904 418520

Neighbor

gene id symbol gene type direction distance location
LOC118947904 LOC106606697 coding downstream 74 389054 ~ 400830 (-)
LOC110486843 LOC106601652 coding downstream 17262 382082 ~ 383642 (-)
LOC118947907 LOC106606653 coding upstream 95086 513606 ~ 522862 (-)
LOC110486820 LOC106606690 coding upstream 104802 523322 ~ 568570 (-)
LOC110486817 LOC106601768 coding upstream 174936 593456 ~ 604197 (-)
LOC110519423 LOC106606673 coding upstream 185933 604453 ~ 607145 (-)
LOC118947905 LOC106606687 coding upstream 195675 614195 ~ 623434 (-)
G2350577 NA non-coding downstream 71666 328314 ~ 329238 (-)
G2350575 NA non-coding downstream 74341 325859 ~ 326563 (-)
G2350574 NA non-coding downstream 75632 324691 ~ 325272 (-)
G2350572 NA non-coding downstream 85379 315311 ~ 315525 (-)
G2350555 NA non-coding downstream 136665 263146 ~ 264239 (-)
G2350618 NA non-coding upstream 5345 423865 ~ 424470 (-)
G2350622 LOC106606694 non-coding upstream 16262 434782 ~ 435028 (-)
G2350623 LOC106601785 non-coding upstream 16869 435389 ~ 435669 (-)
G2350625 NA non-coding upstream 18485 437005 ~ 437311 (-)
G2350656 NA non-coding upstream 75495 494015 ~ 506260 (-)
G2350578 NA other downstream 69567 330712 ~ 331337 (-)
G2350576 NA other downstream 70267 327477 ~ 330637 (-)
G2350264 LOC106606649 other downstream 299889 100617 ~ 101015 (-)
G2350619 e4f1 other upstream 9731 428251 ~ 429561 (-)
G2350673 LOC106606689 other upstream 91392 509912 ~ 510609 (-)
G2350665 NA other upstream 115719 534239 ~ 535381 (-)

Expression


Co-expression Network