LOC118947907 (LOC106606653)


Basic Information

Item Value
gene id LOC118947907
gene name LOC106606653
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493685.1
NCBI id JAAXML020000486.1
chromosome length 631356
location 513606 ~ 522862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972992.1
tctctctctgtctctgtctctgtgtctgtctctcctctctgtctctctctgtctctcctctctgtctctgtgtgtgtctctctcctctttctctctgtctctgtctctcacctctctgATGTTGTCATCGGTGTGTCTtcacccctcactctctcccctctcccctctgtatAGCCCCGCTCCTAACAAACTGGGcgaccccacccccaccccacgtAGAACTGCCACTCTAAATAGAAAACAGCACCATCATGCTTCTTCGCCCGCCTTCCAGCCCCCTCTACCACCGCCAGAGGCTGGAGGAGTCACCCAGACCCAGCCTGTGGCTGAGCCCCAGACCCAGGAGCAAACTCTGTGTGGGAGTACGGAGGCTGGCCAGCCTGGCCTGgctgggggtggtgggggtgggggtcagGGTGTGGCACCAGAGGTCCAGGTGGccacagggcagcagcctctgcCTCTTACCCAGCACAGCGCTGAGGAGAATAGCCCTGGCCAtgaccccaccaccacccccgctcCCCTGAGGAACGGGGGCTCCCAGCTCACCGTGGGGACACCCCACTCCCAGGCAGGATGCAGGGGTCCTAGCCCCCACATTGGACGCAGAGGTACTAAGAAGCAAGCCCCTGCCCCACCCAAACAGGCCAACCCCTTTGTAGCTAATGTCTCTACCCTTGGCCACAGTCCCGCGCCTAACAACCCCTACCCCCTCATCGCTCCACGACGCCACTCTGGTAAAGAAACCCCCATCCACGCCCCCAGCCACCCGCCCCCACAGCCCCCTCAGTCTCAGGGGGAGTCAGACCCCTCTCCGccccacacccccacaccccctAGCACCCCTCCTCACGATGGTCCAACCTCCACCCCCTTCACCCCTCTATCCTCCTTCCACTCTGGCTCCCTCCCTCGCCCCACCAGGCCGGCTCCGAAGCCACGCTCCCGACCTACAGTTCCCCCGCCCCGTCAGCCGCCCACCAATGACGACAGCAACGGGCCCAGCGGCTCTGCCTCCAAGGTCATCACCGATGCCAGCCTGAACTTGAAGGGGATTGGCCGAGCCCTTATCCCTGAAATTATGGTGGACATACAAGGGGAGAGCTCTGCTGGTCATGAGCCCTCCCCCTATCCAACCCCACCCTTGGACCCTGAGATCCAATCAGAGAGCACCAGTCTGTGAAAGCGGGAGGGATCACTCCAACTGACATCACCAAAAAACATTCTGCCTCTGCCCAATTGGTCAATATGCTAGCCATTCATCCAATCGCCGTAGTCGGAGTCAGCTCTGAGCCTCTACAGACTGGACCATACAAACTCCCTGCTCATCAATCCAGTGAGCAATAGTGTCTACAACAAACAACCCCTAGCCAACATTACTCTCTACAACAATACAGGGACTAGACAACCTTCTCTTACTCCATAATCCAAACTCAACACTGTTGGCACCCACCACCCAACACCCTCAACATCAACACCCTTCCATCCATAAACCATCAACAGTATTGGAACTGGACCACAGGATCACCCCATGTTCATTGAACCTTCAACCTGCTAAACATGATAGGAAGTTGGCCTGCAGCTAGAGATGCCACTGTAGCTTTCTATTGAATCAACCAAGCCTGTACTGGGActggacaatatatatatatatatatattaaaatatataacCACTGAACTCCAATGCTGGTGAAGCTGTAATGTTATGACCCAGTACCTGGAAGCATCTGATGCAAATCTGAATATACTGTTTCATCTTTGGATCCATTGTAGAATGTTGACATTGATTTGGGGCTGGGTGGGAGGCTAAGCTTGTAAACCTAAAAGCTCAGAACTTGTATGATGTAACGTTCCTCCCTGTGGTACATTGTATGGTGGTTGTAGGAATATTCTTTGAATGGAAATTGCTCATTTGTATGTCCTCAATGCATTACCTAAGATTGTCTACAAAACTGCAATTTTGCCCCATTTGAGAACTTTCTTTAATGGTTTTTAATGGGCCAAGTAATACAAATGTAATGCAGAAAGTGCTATTGATGAGCAAATATACATGGTGAGCCCAAAGAATCCTATAAATTGCCATACTTGATTTGATGAGAGCTCTCAAGGACCAAAGATGCCAGTTGATGAATAAGTACATGAGTGAGTGTGCTGGTGAGTGTGCTTGGTGAGTGTGCTGCTTTGTGTTTGTAAtataatgttttaatagttgccaAGGACCAAATAAGTATCAATGAGGAGTGCAATTTAATTAACTGCATTCGTTTCATACTGTCTTCTCCACTCCCAATATTCACCCTGtttcatttgttgttgtttttaacctTTCTTACCGCAATATACTATAGCACTGTGTTTTATTCAACAGAGCTGAATTCAAACAAAACAGTCACCCCTGCCAAAAATGTGTATACCAAtcacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaACAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaACAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaataAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCtgccacagattttttttttttttagaaattatTTGTTTTTATATCCGTTTTGATTTAATTTAGCTCAGGAAATGGACAAGCAACAGAACAATATCCcaggttttattttattttatgattACTTTTCAAATTTAGGATGTTATGTTGACAATCTTTAGTGGGTAACCTGGCTTCTCACTCTGCTTGTGATTATTGCCTTTTTTTCACTACATTGCATGTTTTGAATGTGATTTGCTTGTTTTCTGCCCGTGTCTTTTCAACCTGAAAATGAACAAAGATTTTCGATAATGAGTGAATGGATCCTCCACTGTTTGTTCATATTAAAGGAAAATTGTTTTGGGTATTATTACtctaaataaacaaaacatgaaTTAAAACA
>TU2694547
CTCACGATGGTCCAACCTCCACCCCCTTCACCCCTCTATCCTCCTTCCACTCTGGCTCCCTCCCTCGCCCCACCAGGCCGGCTCCGAAGCCACGCTCCCGACCTACAGTTCCCCCGCCCCGTCAGCCGCCCACCAATGACGACAGCAACGGGCCCAGCGGCTCTGCCTCCAAGGTCATCACCGATGCCAGCCTGAACTTGAAGGGGATTGGCCGAGCCCTTATCCCTGAAATTATGGTGGACATACAAGGGGAGAGCTCTGCTGGTCATGAGCCCTCCCCCTATCCAACCCCACCCTTGGACCCTGAGATCCAATCAGAGAGCACCAGTCTGTGAAAGCGGGAGGGATCACTCCAACTGACATCACCAAAAAACATTCTGCCTCTGCCCAATTGGTCAATATGCTAGCCATTCATCCAATCGCCGTAGTCGGAGTCAGCTCTGAGCCTCTACAGACTGGACCATACAAACTCCCTGCTCATCAATCCAGTGAGCAATAGTGTCTACAACAAACAACCCCTAGCCAACATTACTCTCTACAACAATACAGGGACTAGACAACCTTCTCTTACTCCATAATCCAAACTCAACACTGTTGGCACCCACCACCCAACACCCTCAACATCAACACCCTTCCATCCATAAACCATCAACAGTATTGGAACTGGACCACAGGATCACCCCATGTTCATTGAACCTTCAACCTGCTAAACATGATAGGAAGTTGGCCTGCAGCTAGAGATGCCACTGTAGCTTTCTATTGAATCAACCAAGCCTGTACTGGGActggacaatatatatatatatatatattaaaatatataacCACTGAACTCCAATGCTGGTGAAGCTGTAATGTTATGACCCAGTACCTGGAAGCATCTGATGCAAATCTGAATATACTGTTTCATCTTTGGATCCATTGTAGAATGTTGACATTGATTTGGGGCTGGGTGGGAGGCTAAGCTTGTAAACCTAAAAGCTCAGAACTTGTATGATGTAACGTTCCTCCCTGTGGTACATTGTATGGTGGTTGTAGGAATATTCTTTGAATGGAAATTGCTCATTTGTATGTCCTCAATGCATTACCTAAGATTGTCTACAAAACTGCAATTTTGCCCCATTTGAGAACTTTCTTTAATGGTTTTTAATGGGCCAAGTAATACAAATGTAATGCAGAAAGTGCTATTGATGAGCAAATATACATGGTGAGCCCAAAGAATCCTATAAATTGCCATACTTGATTTGATGAGAGCTCTCAAGGACCAAAGATGCCAGTTGATGAATAAGTACATTTGGTGAGTGTGCTGCTTTGTGTTTGTAAtataatgttttaatagttgccaAGGACCAAATAAGTATCAATGAGGAGTGCAATTTAATTAACTGCATTCGTTTCATACTGTCTTCTCCACTCCCAATATTCACCCTGtttcatttgttgttgtttttaacctTTCTTACCGCAATATACTATAGCACTGTGTTTTATTCAACAGAGCTGAATTCAAACAAAACAGTCACCCCTGCCAAAAATGTGTATACCAAtcacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttccc
>TU2694548
CTCACGATGGTCCAACCTCCACCCCCTTCACCCCTCTATCCTCCTTCCACTCTGGCTCCCTCCCTCGCCCCACCAGGCCGGCTCCGAAGCCACGCTCCCGACCTACAGTTCCCCCGCCCCGTCAGCCGCCCACCAATGACGACAGCAACGGGCCCAGCGGCTCTGCCTCCAAGGTCATCACCGATGTGTGAGCTGCCGCCCTGCCTGTGAGCTGAGATTGAGAGGCAGGTAATGATGCCAGCCTGAACTTGAAGGGGATTGGCCGAGCCCTTATCCCTGAAATTATGGTGGACATACAAGGGGAGAGCTCTGCTGGTCATGAGCCCTCCCCCTATCCAACCCCACCCTTGGACCCTGAGATCCAATCAGAGAGCACCAGTCTGTGAAAGCGGGAGGGATCACTCCAACTGACATCACCAAAAAACATTCTGCCTCTGCCCAATTGGTCAATATGCTAGCCATTCATCCAATCGCCGTAGTCGGAGTCAGCTCTGAGCCTCTACAGACTGGACCATACAAACTCCCTGCTCATCAATCCAGTGAGCAATAGTGTCTACAACAAACAACCCCTAGCCAACATTACTCTCTACAACAATACAGGGACTAGACAACCTTCTCTTACTCCATAATCCAAACTCAACACTGTTGGCACCCACCACCCAACACCCTCAACATCAACACCCTTCCATCCATAAACCATCAACAGTATTGGAACTGGACCACAGGATCACCCCATGTTCATTGAACCTTCAACCTGCTAAACATGATAGGAAGTTGGCCTGCAGCTAGAGATGCCACTGTAGCTTTCTATTGAATCAACCAAGCCTGTACTGGGActggacaatatatatatatatatatattaaaatatataacCACTGAACTCCAATGCTGGTGAAGCTGTAATGTTATGACCCAGTACCTGGAAGCATCTGATGCAAATCTGAATATACTGTTTCATCTTTGGATCCATTGTAGAATGTTGACATTGATTTGGGGCTGGGTGGGAGGCTAAGCTTGTAAACCTAAAAGCTCAGAACTTGTATGATGTAACGTTCCTCCCTGTGGTACATTGTATGGTGGTTGTAGGAATATTCTTTGAATGGAAATTGCTCATTTGTATGTCCTCAATGCATTACCTAAGATTGTCTACAAAACTGCAATTTTGCCCCATTTGAGAACTTTCTTTAATGGTTTTTAATGGGCCAAGTAATACAAATGTAATGCAGAAAGTGCTATTGATGAGCAAATATACATGGTGAGCCCAAAGAATCCTATAAATTGCCATACTTGATTTGATGAGAGCTCTCAAGGACCAAAGATGCCAGTTGATGAATAAGTACATGAGTGAGTGTGCTGGTGAGTGTGCTTGGTGAGTGTGCTGCTTTGTGTTTGTAAtataatgttttaatagttgccaAGGACCAAATAAGTATCAATGAGGAGTGCAATTTAATTAACTGCATTCGTTTCATACTGTCTTCTCCACTCCCAATATTCACCCTGtttcatttgttgttgtttttaacctTTCTTACCGCAATATACTATAGCACTGTGTTTTATTCAACAGAGCTGAATTCAAACAAAACAGTCACCCCTGCCAAAAATGTGTATACCAAtcacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttccc
>TU2694549
CTCACGATGGTCCAACCTCCACCCCCTTCACCCCTCTATCCTCCTTCCACTCTGGCTCCCTCCCTCGCCCCACCAGGCCGGCTCCGAAGCCACGCTCCCGACCTACAGTTCCCCCGCCCCGTCAGCCGCCCACCAATGACGACAGCAACGGGCCCAGCGGCTCTGCCTCCAAGGTCATCACCGATGCCAGCCTGAACTTGAAGGGGATTGGCCGAGCCCTTATCCCTGAAATTATGGTGGACATACAAGGGGAGAGCTCTGCTGGTCATGAGCCCTCCCCCTATCCAACCCCACCCTTGGACCCTGAGATCCAATCAGAGAGCACCAGTCTGTGAAAGCGGGAGGGATCACTCCAACTGACATCACCAAAAAACATTCTGCCTCTGCCCAATTGGTCAATATGCTAGCCATTCATCCAATCGCCGTAGTCGGAGTCAGCTCTGAGCCTCTACAGACTGGACCATACAAACTCCCTGCTCATCAATCCAGTGAGCAATAGTGTCTACAACAAACAACCCCTAGCCAACATTACTCTCTACAACAATACAGGGACTAGACAACCTTCTCTTACTCCATAATCCAAACTCAACACTGTTGGCACCCACCACCCAACACCCTCAACATCAACACCCTTCCATCCATAAACCATCAACAGTATTGGAACTGGACCACAGGATCACCCCATGTTCATTGAACCTTCAACCTGCTAAACATGATAGGAAGTTGGCCTGCAGCTAGAGATGCCACTGTAGCTTTCTATTGAATCAACCAAGCCTGTACTGGGActggacaatatatatatatatatatattaaaatatataacCACTGAACTCCAATGCTGGTGAAGCTGTAATGTTATGACCCAGTACCTGGAAGCATCTGATGCAAATCTGAATATACTGTTTCATCTTTGGATCCATTGTAGAATGTTGACATTGATTTGGGGCTGGGTGGGAGGCTAAGCTTGTAAACCTAAAAGCTCAGAACTTGTATGATGTAACGTTCCTCCCTGTGGTACATTGTATGGTGGTTGTAGGAATATTCTTTGAATGGAAATTGCTCATTTGTATGTCCTCAATGCATTACCTAAGATTGTCTACAAAACTGCAATTTTGCCCCATTTGAGAACTTTCTTTAATGGTTTTTAATGGGCCAAGTAATACAAATGTAATGCAGAAAGTGCTATTGATGAGCAAATATACATGGTGAGCCCAAAGAATCCTATAAATTGCCATACTTGATTTGATGAGAGCTCTCAAGGACCAAAGATGCCAGTTGATGAATAAGTACATGAGTGAGTGTGCTGGTGAGTGTGCTTGGTGAGTGTGCTGCTTTGTGTTTGTAAtataatgttttaatagttgccaAGGACCAAATAAGTATCAATGAGGAGTGCAATTTAATTAACTGCATTCGTTTCATACTGTCTTCTCCACTCCCAATATTCACCCTGtttcatttgttgttgtttttaacctTTCTTACCGCAATATACTATAGCACTGTGTTTTATTCAACAGAGCTGAATTCAAACAAAACAGTCACCCCTGCCAAAAATGTGTATACCAAtcacagatttcccctttaaaagaAAAGTTATATAAGAAAAGTGATTGGATATTCCCTGccacagatttccc

Function

NR:

description
rho GTPase-activating protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972992.1 False 4655 mRNA 0.42 4 513606 522862
TU2694547 False 1618 lncRNA 0.44 3 515768 520831
TU2694548 False 1693 lncRNA 0.45 3 515768 520831
TU2694549 True 1642 lncRNA 0.45 2 515768 520831

Neighbor

gene id symbol gene type direction distance location
LOC110486835 LOC106606695 coding downstream 95086 400904 ~ 418520 (-)
LOC118947904 LOC106606697 coding downstream 112776 389054 ~ 400830 (-)
LOC110486843 LOC106601652 coding downstream 129964 382082 ~ 383642 (-)
LOC110486820 LOC106606690 coding upstream 460 523322 ~ 568570 (-)
LOC110486817 LOC106601768 coding upstream 70594 593456 ~ 604197 (-)
LOC110519423 LOC106606673 coding upstream 81591 604453 ~ 607145 (-)
LOC118947905 LOC106606687 coding upstream 91333 614195 ~ 623434 (-)
G2350656 NA non-coding downstream 7346 494015 ~ 506260 (-)
G2350625 NA non-coding downstream 76295 437005 ~ 437311 (-)
G2350623 LOC106601785 non-coding downstream 77937 435389 ~ 435669 (-)
G2350622 LOC106606694 non-coding downstream 78578 434782 ~ 435028 (-)
G2350618 NA non-coding downstream 89136 423865 ~ 424470 (-)
G2350679 NA non-coding upstream 17299 540161 ~ 540765 (-)
G2350686 NA non-coding upstream 32796 555658 ~ 557973 (-)
G2350691 NA non-coding upstream 46815 569677 ~ 570285 (-)
G2350705 NA non-coding upstream 66412 589274 ~ 589871 (-)
G2350673 LOC106606689 other downstream 2997 509912 ~ 510609 (-)
G2350619 e4f1 other downstream 84045 428251 ~ 429561 (-)
G2350578 NA other downstream 182269 330712 ~ 331337 (-)
G2350576 NA other downstream 182969 327477 ~ 330637 (-)
G2350264 LOC106606649 other downstream 412591 100617 ~ 101015 (-)
G2350665 NA other upstream 11377 534239 ~ 535381 (-)

Expression


Co-expression Network