XLOC_004259 (bhlhe40)


Basic Information

Item Value
gene id XLOC_004259
gene name bhlhe40
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35759652 ~ 35763323 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008126
TGTGACTGGAGCTCGAGACGTGTCTGCAGTCACAGGGTTTATTTAACACGTACTTCAAATCCACCCACATACACTCATTTAACCAGCACCGGAGCCGACAAACGCCTCCTGCATCTCCACCTCACAACAACACCACTTCTGCGTCCTACTTCTGAGGCTTGAATCTGGAAAGAACTACTTCATTCGAGGAAAACACATGTGGACTTTGATAAGAGAATAAcggattgtttttttatttttgtatctactttttgttattattatttttgatttaccCTATTCTTACACCAGTAAGACACTAGGGTGAAATGGAGAGGATTACCAGTGCTCAGCCTCCTCCGTGTATGTCCAAACACCCCTCGCTGGATATCTCTGACATGCAAGGaATGGACTTTCCCATGTATGTGTATAAACCCAGACGAGGAATGAAGCGCAGTGAGGACAGTAAGGATACGTACAAACTGCCTCATCGATTGATCGAGAAGAAAAGAAGAGACCGAATAAACGAGTGCATCGCGCAGTTGAAGGATTTGCTGCCCGAACACCTTAAACTCACGACTCTGGGACACTTGGAGAAGGCTGTTGTCTTGGAACTCACACTCAAGCATGTGAAGGCTCTTAACAACCTGCTGGAACAGCAACAACAGAAGATCATTTCCTTGCAGAATGGATTGCAAATCGGCGAACAGGGAAATGGGCCCTCAGAAAACAGTGAAGAGATGTTTCGTTCCGGGTTCCACTTGTGCGCCAAGGAGGTTCTTCAGTTCCTGGCCAATCAAGAGACCATGCGTGACCTGACCACTGCTCACATAATCGAGCACCTTCAAAAAGTGGCATCTGAGCTCATTCAGAGCCCACCGAGTCCTCGCCTGGACGAGCCCGCTCCCAAAGCTCAAGAGAGTCGGGAGAAACCATCAGGCCTACAGCCAAAGGCTGCAGAAGGTCATGCTAAAAACTGTGTGCCTGTCATTCAAAGGACTTATCCCCACAGCAGTGAGCAGAGCGGGAGTGATACGGACACCGACAGTGGCTATGGGGGCGAGTACGAGAAGCGTGACCAGAAAGCTCAGCGGCCGGACTGCTACGTAAAAGAAAGCGGGGCTCTCAAGTACAGCAGCAGCATTAAAGAGGAGCAGGATGAGCCACCAAGCAAACGGCCGAGGTCAGACTCCTCAGAAGATGAGTCTCTGTCAGGGCATGATGTAGTGGGCGGCCACAGCCCCTACGTGAGCTTTTCGCCACCACAGCCCCTGTGCATGCCCTTCTACCTCTTTCCGCCTGGCGCGGCTGCCGCATACTTGCCTATGCTGGAGAAGTGTTGGTACCCAGGGGCTATGCCCGTATTGTACCCAGGTCTCGGTAGCTCCCCTGCAAGCCTCTCTCCTGAGAAACTCCCCTCATCCATGGTCATGTCCTCACGAGTGGGCTCTCCTGTCTCCACTCCCACCTCCATGGACTCTCCTGCACTCCTGCAGGCCCTCAAACAAGTTCCTCCATTAAACCTGGAAACCAAAGACTGAGGACTCCATCTGGGGTCCACCACCAGCCCGCTCTCTGAATGTTTTGGTCTCGAGAGTGGACTTCCCTGCTGAATAAGCTCCCGAAGAGGGTTCGGTTGAAGAGGGCGCAAAGGCAAAGTTCAAAGCAGCGAAGCAGCGCCCTCAAGCACAGCGAACAGCTGTTCTGATTCCTCTCAGAAGTACGCCGGCCTCCctccaacacacacaaacacactctctcttatCAGCTCCCTCCGCAACCAGCAGACACGCATCCAGAGACAGAACTGTCCCAGACGGGTAAAGGAGGCCCCGTGCAAAGCACTGTGAGACACTGTGAAGAAGGTCAAAAAGAGGACAGTGAGAGCTGTTCTCTGAGTAAAAGTATCTGGGGAGGGTGAACGGCTGCTCTCTGCACTTATGCCGAATGTTTAAGTCGTAAACAAAACTAAACCCAGAATGTGACGTGCAGATGGTCCCCCATTGATAAGGACTTTGCCCTTTGCACAAGCACCTTTTCATTTGTTGAATGTAAACGAAAAGTCcttttataataaaacatcaccCCTGTAGATGCTGCTTTTTGGACATTTCTCTGTGCCGTGGACGCTTGATCAGGAAGCTCCACTCTCTTCTGCTTCTGTGACTGCTTTAACCAATAAGAGTCGTCCTTTTAGACTAGAAGGCTACCAAATAAACGTCTTTGCATTGGTCGACTGCGTGCACGTTTACCATCTCGCGCTCATCTGAGTTTTCTTGCATAAACGAGGACGCCACGGACTCTTGAGACGTGACGCTCGTGTAAATACGGGAGTGATGTAATCACGCTGTAGCTTCTTGAGTTTGTCATCCATTCGTGCACGTAGCTGAAGCTGTTGTGAGGTATCCGCGTtgtgtaattattttgtttatacttCTTGTACATCTGTATTTTTGATACGTGACCCACACCTTTGAGTTTCTAGACAGCCGAGCGCTGTATGCCATGAGATTGTGTACATAGCATCATGTTCTGTGTTCATTTCTGGTCAAATTAGGACAGATCTTTGTTCATGCTGTTGCCTTTACCTGTTTAAAGCAGTAAACATGATGGcggatatttacatttttgatcctGGATTCTTCATAGAAGCAAAAGAAAGTGAATGTAATGttcaaaaaaaaacaattagttttGTATAGGAAGAGGTACTTACTTTTTATTTTGGGACCTAAGAGAAGGTTGCTTGATGTATATATTTTGTCTAAAGGTATTGTTGACATACATTAAAGTAAAAGTATTATTAAAGTCTTTTTTTCCCTGTG

Function

symbol description
bhlhe40 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian regulation of gene expression; locomotor rhythm; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human BHLHE40 (basic helix-loop-helix family member e40).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045475 locomotor rhythm biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3133 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian regulation of gene expression; locomotor rhythm; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human BHLHE40 (basic helix-loop-helix family member e40).

Ensembl:

ensembl_id ENSDARG00000004060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008126 True 2804 mRNA 0.48 5 35759652 35763323

Neighbor

gene id symbol gene type direction distance location
XLOC_004258 arl8bb coding downstream 3184 35744918 ~ 35756468 (-)
XLOC_004257 NA coding downstream 18208 35578730 ~ 35741444 (-)
XLOC_004256 sema3fb coding downstream 183822 35447417 ~ 35575830 (-)
XLOC_004255 NA coding downstream 318235 35438013 ~ 35441417 (-)
XLOC_004254 BX293991.1 coding downstream 534513 35225022 ~ 35225139 (-)
XLOC_004260 itpr1b coding upstream 14006 35777329 ~ 36020005 (-)
XLOC_004261 setmar coding upstream 273753 36037076 ~ 36040549 (-)
XLOC_004262 brk1 coding upstream 278294 36041617 ~ 36156971 (-)
XLOC_004263 rrp9 coding upstream 452375 36215698 ~ 36230163 (-)
XLOC_004264 NA coding upstream 478736 36242059 ~ 36246756 (-)
XLOC_004063 CR854846.1 misc downstream 19631974 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 23067961 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 23137885 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 23168356 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 23246390 12512966 ~ 12513262 (-)
XLOC_004249 NA non-coding downstream 1182546 34550847 ~ 34577106 (-)
XLOC_004247 BX548160.2 non-coding downstream 1293139 34466395 ~ 34466513 (-)
XLOC_004269 NA non-coding upstream 721069 36484392 ~ 36687161 (-)
XLOC_004270 NA non-coding upstream 805601 36568924 ~ 36569266 (-)
XLOC_004271 CR457444.8 non-coding upstream 857394 36620717 ~ 36627322 (-)
XLOC_004274 BX248521.2 non-coding upstream 1246838 37010161 ~ 37015507 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017068 NA coding CM030122.1 CM030122.1 43806964 ~ 43814318 (+)