Item | Value |
---|---|
gene id | LOC110510382 |
gene name | tsc2 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NW_023493688.1 |
NCBI id | JAAXML020000806.1 |
chromosome length | 586704 |
location | 52195 ~ 118182 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
tsc2 | Predicted to enable GTPase activator activity. Acts upstream of or within intestinal epithelial cell differentiation; negative regulation of TOR signaling; and regulation of action potential firing pattern. Predicted to be located in nucleus. Predicted to be part of TSC1-TSC2 complex. Predicted to be active in cytoplasm. Is expressed in several structures, including brain; cardiovascular system; head; immature eye; and intestine. Used to study anxiety disorder; tuberous sclerosis; and tuberous sclerosis 2. Human ortholog(s) of this gene implicated in hepatic angiomyolipoma; lymphangioleiomyomatosis; medulloblastoma; tuberous sclerosis; and tuberous sclerosis 2. Orthologous to human TSC2 (TSC complex subunit 2). |
description |
---|
PREDICTED: tuberin isoform X3 |
id | description |
---|---|
K07207 | TSC2; tuberous sclerosis 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XR_005042059.1 | False | 5802 | mRNA | 0.57 | 40 | 52195 | 115579 |
XM_036973064.1 | False | 6933 | mRNA | 0.56 | 42 | 52198 | 118182 |
XM_036973065.1 | False | 6851 | mRNA | 0.55 | 41 | 52199 | 118182 |
XM_036973066.1 | True | 6764 | mRNA | 0.55 | 41 | 52199 | 118182 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110510468 | LOC106580921 | coding | upstream | 12164 | 24678 ~ 40031 (+) |
LOC110511645 | LOC106591454 | coding | upstream | 34431 | 8552 ~ 17764 (+) |
LOC118948151 | LOC106564321 | coding | upstream | 46284 | 1443 ~ 5911 (+) |
LOC118948152 | NA | coding | downstream | 134457 | 252639 ~ 254326 (+) |
LOC110511098 | LOC105031543 | coding | downstream | 173229 | 291411 ~ 298247 (+) |
LOC110516582 | LOC106592167 | coding | downstream | 356671 | 474853 ~ 586313 (+) |
G2351491 | NA | non-coding | downstream | 408 | 118590 ~ 118932 (+) |
G2351482 | NA | non-coding | downstream | 2218 | 120400 ~ 121247 (+) |
G2351483 | NA | non-coding | downstream | 3162 | 121344 ~ 122085 (+) |
G2351492 | NA | non-coding | downstream | 4499 | 122681 ~ 123674 (+) |
G2351502 | NA | non-coding | downstream | 31255 | 149437 ~ 150029 (+) |