XLOC_004264


Basic Information

Item Value
gene id XLOC_004264
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36242059 ~ 36246756 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008839
GGGGCTTCAGCACTACATCCTCAGCGACGGCAATAACAATATTTTCATTTCGCTAAGACAACAAAGACAATCACTACTTCTTCTGAAATACTACAAAATATCTGGACAGTTTCCAGCGGCGTCTTCCATGTCTGCTGTCCCTCGTCGTCCTCTCCGTCTCCTGCGTCCCTCAGGTCGATCTCAGTCTCACTGGAGTCCACACTGCGCATCATGGTGCCCGTCATCAATATGAGGCTCAAGAGGTCATAAAGACAGCATCAAAACAGGCATAAACAgcctcacacatacacacagtgaaTGGAGAGCCGCATCGCTGTCCTGAAGCTGAAACGGAGATCTGGGATATATTAGGAAAGTCAACGTGCCCTCGCAGGCATTCCCAAACAGGCCCCAATGGGGAGATGCCAACCCCTACTGATACTAATGCTATAAATACTCCATTAGTGACTGGACCAATGCAGAGAGCTGTTCACCTTTGCTCACACTGCCTGTCTCGTGGATTGTGATGTCAGACCATCgctttttaataaatgttctttTGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008839 True 543 lncRNA 0.48 3 36242059 36246756

Neighbor

gene id symbol gene type direction distance location
XLOC_004263 rrp9 coding downstream 11896 36215698 ~ 36230163 (-)
XLOC_004262 brk1 coding downstream 85088 36041617 ~ 36156971 (-)
XLOC_004261 setmar coding downstream 201510 36037076 ~ 36040549 (-)
XLOC_004260 itpr1b coding downstream 222054 35777329 ~ 36020005 (-)
XLOC_004259 bhlhe40 coding downstream 478736 35759652 ~ 35763323 (-)
XLOC_004265 nfya coding upstream 7528 36254284 ~ 36279664 (-)
XLOC_004266 sort1a coding upstream 33767 36280523 ~ 36341189 (-)
XLOC_004267 psma5 coding upstream 96241 36342997 ~ 36350993 (-)
XLOC_004268 zbtb40 coding upstream 175477 36422233 ~ 36475124 (-)
XLOC_004269 NA coding upstream 237636 36484392 ~ 36687161 (-)
XLOC_004063 CR854846.1 misc downstream 20114381 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 23550368 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 23620292 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 23650763 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 23728797 12512966 ~ 12513262 (-)
XLOC_004257 NA non-coding downstream 500615 35578730 ~ 35741444 (-)
XLOC_004255 NA non-coding downstream 800642 35438013 ~ 35441417 (-)
XLOC_004254 BX293991.1 non-coding downstream 1016920 35225022 ~ 35225139 (-)
XLOC_004249 NA non-coding downstream 1664953 34550847 ~ 34577106 (-)
XLOC_004247 BX548160.2 non-coding downstream 1775546 34466395 ~ 34466513 (-)
XLOC_004270 NA non-coding upstream 322168 36568924 ~ 36569266 (-)
XLOC_004271 CR457444.8 non-coding upstream 373961 36620717 ~ 36627322 (-)
XLOC_004274 BX248521.2 non-coding upstream 763405 37010161 ~ 37015507 (-)
XLOC_004275 BX248521.1 non-coding upstream 791664 37038420 ~ 37044539 (-)

Expression


Co-expression Network