G2352624 (LOC106575348)


Basic Information

Item Value
gene id G2352624
gene name LOC106575348
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493691.1
NCBI id JAAXML020000620.1
chromosome length 579594
location 201984 ~ 229591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2697294
agatcgaatccccaagctgacaaggtaaaaatctgttgttctgcctctgaacaaggcagttaacccactgttcctaggccatcattgtaaataagaatttgttcttaacggacttgcctagttaaataaaggttcaacacattttttaaattagtgTCTACTAGCTCATTCTCACAAAATACTGCCGAAGGACAACCTGGTCTCTGAGCAAAACGTATTATGTATTACAAAAACATCCGtgccactccatttagtatgttaAGTTACATTATATTGGCCTACCAATGtaaactgaactaaaatataaacatgtaaataaactaaacatgtaaagtgttggtttcatgagctgaattaaaACACTCCAGCAATGTTCCATGTACAGAAAAAGCtactttctctcaaatgttgtgaacAACTTTGTTTATATCACTGTTCGTGAGCATTTcagcctttgtcaagataatccatccacctgacaggtgtggcatatcaagatgctgataaaacagcattatcattacacaggtgcaccttgtgctggggggaaATTaagaccacacaacacaatgtcactgATGTCTCAAGTTCAGGGAATGTGCAATTGTCATGATGACTGCAGGAGAGAATTCAATATTTATCTCTCTCCCATAAGCCACCTCTAACgtccttttagagaatttggcagtacatccaaccggcctcacaactgcagatcacatgtaaccacggcagcccaggacctctTCACCCGCAGGATTGTCTGGGAGGGGGCTGagtagtatttctgtctgtaatcaataccttttgtggggaaaaattcatgctgattggctgggcctggctcccaagtgggcctATATGCCCTCCCTGAGCCCCTGCCCAGtaatatgaaatccatagatataTGTTCATGTGATTTTAAGTTGGAAAGTTGCAAGAAACTAGTTCCAGTCAGAGCAGACGTAAGgcttatctcctgtgtgtgttctctgatgaactttgaGCTGAgttgatgttttaaaacattttgcacaGTCAGGGCagaagaaaggcttctctcctgtgtgtgttctctgatgaacttttagctcttttgatgttttaaaacattttccacagtcagagcaggagtatggcttctcccctgtgtgtgttctctgatgaacttttagatcagttgatgttgtgaagcattttccacagtcagagcaggagtaaggcttctctccagtgtgtataaGTTGGTGTGTTTTTAAGGTGCCCAGATGAGAGAAACtcgccccacagtcagagcagaaataaggcttctctcctgtgtgtgttctctgatgaacttttagatcagttgatgttgtgaagcattttccacagtcagagcaggagtaaggcttctctccagtgtgtatacgttggtgtgtttttaaggTGCCCAGATGAGAGAAACTcaccccacagtcagagcagacatAAGGCTTTTcacctgtatgtatacgttcatgtgattTTAAGTGGGGAATTTGAGAGAAACTAGTTCCACAGTCAGGGCagaagaaaggcttctctcctgtgtgtgttc
>TU2697293
GAAGAGAAATGTATTTatagtgatatgtggttgtctcacctggcaatcttaagatgaatgtacttAATGTGCTGGTGACATCACAGCGTCAGAGAGAACTCCTGACTGTAGTCATACAAAAACACTCCAGGCACTCAGcccataagaaccattcatactgtcagatctaatatgaagaactgaatacaaccataagaaccattcatactgtcagatctaatatgaagaactgaatacaaccataagaaccattcatactgtcagatctaatatgaagaactgaatactAAAGAGAAGAAGAGGTTGACCAGTACATATTCATGTAACTTTTTTTTTCATTGGCAGATCAATAAAGTTTGCTTCAATGCAGTTATCCAAACACATTCATGATCAATAACTAAAATATCTCATCTAGTTTTAAAGACTATTAATAAACACATGTATTCATTTCATAAACTGTGTATCATTAAATACAGTTGTAAAAGAATCCCCCCAAACTAATGGTGAAAagtgatcatcacaccatctctatctgattcatgttaggggcggtaggtagcctagtggttagagcgttgggtcagtaaccaaaaggttgcttgatcgaatgcccgagctgacaaggtaaaaatctgttgttctgcctctgaacaaggcagttaacccactgttcctaggccatcattgtaaataagaatttgttcttaacggacttgcctagttaaataaaggttcaacacattttttaaattagtgTCTACTAGCTCATTCTCACAAAATACTGCCGAAGGACAACCTGGTCTCTGAGCAAAACGTATTATGTATTACAAAAACATCCGtgccactccatttagtatgttaAGTTACATTATATTGGCCTACCAATGtaaactgaactaaaatataaacatgtaaataaactaaacatgtaaagtgttggtttcatgagctgaattaaaACACTCCAGCAATGTTCCATGTACAGAAAAAGCtactttctctcaaatgttgtgaacAACTTTGTTTATATCACTGTTCGTGAGCATTTcagcctttgtcaagataatccatccacctgacaggtgtggcatatcaagatgctgataaaacagcattatcattacacaggtgcaccttgtgctggggggaaATTaagaccacacaacacaatgtcactgATGTCTCAAGTTCAGGGAATGTGCAATTGTCATGATGACTGCAGGAGAGAATTCAATATTTATCTCTCTCCCATAAGCCACCTCTAACgtccttttagagaatttggcagtacatccaaccggcctcacaactgcagatcacatgtaaccacggcagcccaggacctctTCACCCGCAGGATTGTCTGGGAGGGGGCTGagtagtatttctgtctgtaatcaataccttttgtggggaaaaattcatgctgattggctgggcctggctcccaagtgggcctATATGCCCTCCCTGAGCCCCTGCCCAGtaatatgaaatccatagatataTGTTCATGTGATTTTAAGTTGGAAAGTTGCAAGAAACTAGTTCCAGTCAGAGCAGACGTAAGgcttatctcctgtgtgtgttctctgatgaactttgaGCTGAgttgatgttttaaaacattttgcacaGTCAGGGCagaagaaaggcttctctcctgtgtgtgttctctgatgaacttttagctcttttgatgttttaaaacattttccacagtcagagcaggagtatggcttctcccctgtgtgtgttctctgatgaacttttagatcagttgatgttgtgaagcattttccacagtcagagcaggagtaaggcttctctccagtgtgtataaGTTGGTGTGTTTTTAAGGTGCCCAGATGAGAGAAACtcgccccacagtcagagcagaaataaggcttctctcctgtgtgtgttctctgatgaacttttagatcagttgatgttgtgaagcattttccacagtcagagcaggagtaaggcttctctccagtgtgtatacgttggtgtgtttttaaggTGCCCAGATGAGAGAAACTcaccccacagtcagagcagacatAAGGCTTTTcacctgtatgtatacgttcatgtgattTTAAGTGGGGAATTTGAGAGAAACTAGTTCCACAGTCAGGGCagaagaaaggcttctctcctgtgtgtgttctctgatgaagtTTTAGCACCGTTGATGTtttgaagcattttccacagtcagagcaggagtaaggcttctctcctgtgtgtatttttagGTGTATTTTTAGCTTTGATAGAAATGGGAAAATCTTTTCACAATGTGGGCAGTGATGAGACCTCTTAGCTCTCTGATCTTCCTGCTGTTGCTCTCTGGATGTAGAGAATGTCTCAACAtg
>TU2697295
GAAGAGAAATGTATTTatagtgatatgtggttgtctcacctggcaatcttaagatgaatgtacttAATGTGCTGGTGACATCACAGCGTCAGAGAGAACTCCTGACTGTAGTCATACAAAAACACTCCAGGCACTCAGcccataagaaccattcatactgtcagatctaatatgaagaactgaatacaaccataagaaccattcatactgtcagatctaatatgaagaactgaatacaaccataagaaccattcatactgtcagatctaatatgaagaactgaatactAAAGAGAAGAAGAGGTTGACCAGTACATATTCATGTAACTTTTTTTTTCATTGGCAGATCAATAAAGTTTGCTTCAATGCAGTTATCCAAACACATTCATGATCAATAACTAAAATATCTCATCTAGTTTTAAAGACTATTAATAAACACATGTATTCATTTCATAAACTGTGTATCATTAAATACAGTTGTAAAAGAATCCCCCCAAACTAATGGTGAAAag
>TU2697292
CAATTGTCATGATGACTGCAGGAGAGAATTCAATATTTATCTCTCTCCCATAAGCCACCTCTAACgtccttttagagaatttggcagtacatccaaccggcctcacaactgcagatcacatgtaaccacggcagcccaggacctctTCACCCGCAGGATTGTCTGGGAGGGGGCTGagtagtatttctgtctgtaatcaataccttttgtggggaaaaattcatgctgattggctgggcctggctcccaagtgggcctATATGCCCTCCCTGAGCCCCTGCCCAGtaatatgaaatccatagatataTGTTCATGTGATTTTAAGTTGGAAAGTTGCAAGAAACTAGTTCCAGTCAGAGCAGACGTAAGgcttatctcctgtgtgtgttctctggtgaactttGAGCTGAgttgatgttttaaaacattttgcacaGTCAGGGCagaagaaaggcttctctcctgtgtgtgttctctgatgaacttttagctcttttgatgttttaaaacattttccacagtcagagcaggagtatggcttctcccctgtgtgtgttctctgatgaacttttagatcagttgatgttgtgaagcattttccacagtcagagcaggagtaaggcttctctcctgtgtgtgttctctgatgaacttttagatcagttgatgttgtgaagcattttccacagtcagagcaggagtaaggcttctctccagtgtgtatacgttggtgtgtttttaaggTGCCCAGATGAGAGAAACTcaccccacagtcagagcagacatAAGGCTTTTcacctgtatgtatacgttcatgtgattTTAAGTGGGGAATTTGAGAGAAACTAGTTCCACAGTCAGGGCagaagaaaggcttctctcctgtgtgtgttctctgatgaagtTTTAGCACCGTTGATGTtttgaagcattttccacagtcagagcaggagtaaggcttctctcctgtgtgtatttttagGTGTATTTTTAGCTTTGATAGAAATGGGAAAATCTTTTCACAATGTGGGCAGTGATGAGACCTCTTAGCTCTCTGATCTTCCTGCTGTTGCTCTCTGGATGTAGAGAATGTCTCAACAtg

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2697294 False 1579 lncRNA 0.42 3 201984 222959
TU2697293 False 2387 lncRNA 0.40 4 220781 229591
TU2697295 False 511 lncRNA 0.33 2 220781 224419
TU2697292 True 1102 lncRNA 0.44 3 228238 229591
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Neighbor

gene id symbol gene type direction distance location
LOC110528899 NA coding upstream 37015 162866 ~ 164969 (+)
LOC118948156 LOC106574716 coding upstream 146252 8727 ~ 55732 (+)
LOC110528884 LOC106574953 coding downstream 97732 323948 ~ 572265 (+)
LOC118948158 NA coding downstream 133616 363207 ~ 372271 (+)
LOC110528792 LOC106575350 coding downstream 264819 494410 ~ 506286 (+)
LOC118948159 LOC106592870 coding downstream 329052 558643 ~ 568905 (+)
G2352616 LOC106575393 non-coding upstream 21458 178432 ~ 180526 (+)
G2352613 NA non-coding upstream 35559 165765 ~ 166425 (+)
G2352596 NA non-coding upstream 47123 123150 ~ 154861 (+)
G2352508 NA non-coding upstream 71312 113225 ~ 130672 (+)
G2352549 NA non-coding upstream 138192 61527 ~ 63792 (+)
G2352538 NA non-coding downstream 46194 275785 ~ 293321 (+)
G2352507 NA non-coding downstream 128749 358340 ~ 362252 (+)
G2352528 NA non-coding downstream 146918 376509 ~ 393071 (+)
G2352678 NA non-coding downstream 166024 395615 ~ 398309 (+)
LOC110516274 LOC106592870 other downstream 62700 157942 ~ 316067 (+)

Expression

G2352624(LOC106575348) Expression in all Baseline Samples

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G2352624(LOC106575348) Expression in each Bioproject

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G2352624(LOC106575348) Expression in each Sample
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Co-expression Network