XLOC_004265 (nfya)


Basic Information

Item Value
gene id XLOC_004265
gene name nfya
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36254284 ~ 36279664 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008146
GGGGCGTTGGAGCTTCTGTTCATCGTTTTTTTTCTCTGTGCGCCATTTTGGCTCCTGATCGAGACGAGTTGTGTGATTGGGCTCCAGGCGCCGCTATCGGAGCCAATCAGAGGTGAAACGGGCGGCGGAGCAGACGACTTCTGTTTCTTGCTGATCTCATAACTCTTAAACCACAGCAGTCAGAAGGCCAACATGGAGCAGTACACAACCACCACGACAACTAGTGGAGAGCAGATAGTGGTGCAGGCCAGCGGCGGACAGATCCAGCAACAGGGCACAGTGACTGCGGTGCAGTTGCAGACTGAGCCTCAGGTAGGCCAGACTGCAGCCCAGCAGGTTCTTCAGGTAGTCCAAGGGCAGCCTCTTATGGTTCAAGTCAGCGGCGGTCAGCTCATCACTTCCTCTGGGCAGCCCATAATGGTTCAGGCCATGACAGGAGGACAAGGTCAAACCATTATGCAAGTACCGGTATCTGGTACACAGGGGCTGCAGCAGATTCAGTTGGTTCAGCCTGGTCAGATTCAGCTTCCTGGTGGACAGACTTTACAGCTACAGGGTCAGCAGGGTCAAACTCAACAGATCATCATTCAACAGCCACAGACCGCAGTCACTGCAGGACAAAACCAGGGTCAACAGCAGATTACAGTACAAGGTCAGCAAGTGGCTCAAACCGCTGAAGGACAGACCATCGTATACCAGCCTGTAAATGCAGACGGGACCATCCTACAGCAGGGAATGATCACCATTCCTGCTGCATCTTTAGCAGGAGCTCAGTTAGTCTCAGCTGGATCCAACACAAACACCACCAACACCGGTCAGGGCACAGTTACAGTCACTCTCCCCATGGCTGGAAACATGGTCAATGCTGGAGGAATGGTCATGATGGTGCCAGGCGGTAGCAATTCAGTTCCCACCATGCAGCGCATTCCTCTTCCTGGAGCAGAGATGTTGGAGGAGGAACCTTTGTATGTTAATGCAAAACAGTATCACCGGATACTCAAGAGGAGACAAGCTCGCGCCAAACTGGAGGCTGAAGGCAAAATACCCAAAGAGAGAAGAAAATACCTGCATGAGTCTCGTCATCGTCATGCTATGGCCAGGAAGCGTGGAGACGGTGGACGCTTTTTCTCTCCGAAGGAAAAGGAAGAAATGGCCCTGCAGGCCATAAAGAAAGCTGAGCAGGATCAAGGTGAAGAAGACAGAGTCGGCCAGATGATTCAGGTGGCATAAACTACCCCTTTCTGTTGTACAGTCTGTCCTTTATACTCGTTTTAAACGCAGGAAATTTCAACACATGACTTTCCCTGCTTCTAATATTCTTGATTTCTGTTCTTGTATAGATAAACAGTTGTTTTAGTTTGCTAGAATAATAAGATGgagttttggtcccactttatattaagtggccttaactaatatgtacttacataggaactaatagtttgttacaatgtacttattgtgtaaataatgtatttactttgtatttatgcttgattaaatacatgtatgtaattacatctgtaactacctcttgtaattacatttgtaaatacactgttgaccatcccttacatctTAActtacccttaaacctacccttgccaccaaacctgtccataacccaacctctattccaactcaaaagcaccacaagtgttctcaaatacattataaacacagtaagtacactgtatttatttttttgatgtaagtacatagtagttagggacacttaatataaagtgggaccgaagtTTTTTTAAAACCATCTCATGAGGCTGAAAAGCATATGTTTGCTGTATTTATGAGAAGACCTTTCGTTCTTATGTATTCGCAATTTGTATAGGCATTTCACTCCActccatttctttttatttaattatgagctGACCCATATTAACAGTTGATCACAAAAAATAATGTGAATTACAGGTCAGTTTTCTACTATGGGATGTTTTTACGTGTGTCGGATCTGACTGTGAAATGTTACAGTTTTCTATGCACTCGCGCTTTTAGTTGATCCACCAAACCATTTGTACTTAAACATCTCCTTTAAGGAAAACCTTATTGTCTTTTCTATTGATGTCTTCCTGTTATCAAATAAAGGTTGACGTTCTGTA
>TCONS_00008147
AACAGATCATCATTCAACAGCCACAGACCGCAGTCACTGCAGGACAAAACCAGGGTCAACAGCAGATTACAGTACAAGGTCAGCAAGTGGCTCAAACCGCTGAAGGACAGACCATCGTATACCAGCCTGTAAATGCAGACGGGACCATCCTACAGCAGGGAATGATCACCATTCCTGCTGCATCTTTAGCAGGAGCTCAGTTAGTCTCAGCTGGATCCAACACAAACACCACCAACACCGGTCAGGGCACAGTTACAGTCACTCTCCCCATGGCTGGAAACATGGTCAATGCTGGAGGAATGGTCATGATGGTGCCAGGCGGTAGCAATTCAGTTCCCACCATGCAGCGCATTCCTCTTCCTGGAGCAGAGATGTTGGAGGAGGAACCTTTGTATGTTAATGCAAAACAGTATCACCGGATACTCAAGAGGAGACAAGCTCGCGCCAAACTGGAGGCTGAAGGCAAAATACCCAAAGAGAGAAGAAAATACCTGCATGAGTCTCGTCATCGTCATGCTATGGCCAGGAAGCGTGGAGACGGTGGACGCTTTTTCTCTCCGAAGGAAAAGGAAGAAATGGCCCTGCAGGCCATAAAGAAAGCTGAGCAGGATCAAGGTGAAGAAGACAGAGTCGGCCAGATGATTCAGGTGGCATAAACTACCCCTTTCTGTTGTACAGTCTGTCCTTTATACTCGTTTTAAACGCAGGAAATTTCAACACATGACTTTCCCTGCTTCTAATATTCTTGATTTCTGTTCTTGTATAGATA
>TCONS_00008148
ATTTTGGCTCCTGATCGAGACGAGTTGTGTGATTGGGCTCCAGGCGCCGCTATCGGAGCCAATCAGAGGTGAAACGGGCGGCGGAGCAGACGACTTCTGTTTCTTGCTGATCTCATAACTCTTAAACCACAGCAGTCAGAAGGCCAACATGGAGCAGTACACAACCACCACGACAACTAGTGGAGAGCAGATAGTGGTGCAGGCCAGCGGCGGACAGATCCAGCAACAGGTCCAAGGGCAGCCTCTTATGGTTCAAGTCAGCGGCGGTCAGCTCATCACTTCCTCTGGGCAGCCCATAATGGTTCAGGCCATGACAGGAGGACAAGGTCAAACCATTATGCAAGTACCGGTATCTGGTACACAGGGGCTGCAGCAGATTCAGTTGGTTCAGCCTGGTCAGATTCAGCTTCCTGGTGGACAGACTTTACAGCTACAGGGTCAGCAGGGTCAAACTCAACAGATCATCATTCAACAGCCACAGACCGCAGTCACTGCAGGACAAAACCAGGGTCAACAGCAGATTACAGTACAAGGTCAGCAAGTGGCTCAAACCGCTGAAGGACAGACCATCGTATACCAGCCTGTAAATGCAGACGGGACCATCCTACAGCAGGGAATGATCACCATTCCTGCTGCATCTTTAGCAGGAGCTCAGTTAGTCTCAGCTGGATCCAACACAAACACCACCAACACCGGTCAGGGCACAGTTACAGTCACTCTCCCCATGGCTGGAAACATGGTCAATGCTGGAGGAATGGTCATGATGGTGCCAGGCGGTAGCAATTCAGTTCCCACCATGCAGCGCATTCCTCTTCCTGGAGCAGAGATGTTGGAGGAGGAACCTTTGTATGTTAATGCAAAACAGTATCACCGGATACTCAAGAGGAGACAAGCTCGCGCCAAACTGGAGGCTGAAGGCAAAATACCCAAAGAGAGAAGAAAATACCTGCATGAGTCTCGTCATCGTCATGCTATGGCCAGGAAGCGTGGAGACGGTGGACGCTTTTTCTCTCCGAAGGAAAAGGAAGAAATGGCCCTGCAGGCCATAAAGGTGAGCGAGGGGCTTGAGCTCAGCTCTCATTGGCCAGCCACCTCTGCCCCGCCTCTGGGGTAAACTAGCCAATCCCAGCCCATGTCCCACCCAAGAGACTCAACTCACTATATAATACATCTAATTTAATGTAGATCATCCATATGCTGCGGCCCTGTGCCCAAGCTACCTCATGCGTCTGTGACATACTCATGTCCGACCTGTGTTTGTCTGTGAGTTCATTGACAATTTCCAACCAATTAAACTGAACATGCATACTAAGAACTTAGTATATATGTTCTGTTATATAGCATAAACTAAATACAGTGTACAGTTTAGTCCCCATGTTCGTAAATGCTCTGCCGCCTTTCACAATTTAACTGCATATA
>TCONS_00008149
GACGAGTTGTGTGATTGGGCTCCAGGCGCCGCTATCGGAGCCAATCAGAGGTGAAACGGGCGGCGGAGCAGACGACTTCTGTTTCTTGCTGATCTCATAACTCTTAAACCACAGCAGTCAGAAGGCCAACATGGAGCAGTACACAACCACCACGACAACTAGTGGAGAGCAGATAGTGGTGCAGGCCAGCGGCGGACAGATCCAGCAACAGGGCACAGTGACTGCGGTGCAGTTGCAGACTGAGCCTCAGGTCCAAGGGCAGCCTCTTATGGTTCAAGTCAGCGGCGGTCAGCTCATCACTTCCTCTGGGCAGCCCATAATGGTTCAGGCCATGACAGGAGGACAAGGTCAAACCATTATGCAAGTACCGGTATCTGGTACACAGGGGCTGCAGCAGATTCAGTTGGTTCAGCCTGGTCAGATTCAGCTTCCTGGTGGACAGACTTTACAGCTACAGGGTCAGCAGGGTCAAACTCAACAGATCATCATTCAACAGCCACAGACCGCAGTCACTGCAGGACAAAACCAGGGTCAACAGCAGATTACAGTACAAGGTCAGCAAGTGGCTCAAACCGCTGAAGGACAGACCATCGTATACCAGCCTGTAAATGCAGACGGGACCATCCTACAGCA

Function

symbol description
nfya Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Orthologous to human NFYA (nuclear transcription factor Y subunit alpha).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0010723 positive regulation of transcription from RNA polymerase II promoter in response to iron biological_process
GO:0005634 nucleus cellular_component
GO:0016602 CCAAT-binding factor complex cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05152 Tuberculosis
ko05017 Spinocerebellar ataxia
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-010501-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Orthologous to human NFYA (nuclear transcription factor Y subunit alpha).

Ensembl:

ensembl_id ENSDARG00000042004

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008146 False 2123 mRNA 0.44 10 36254284 36279664
TCONS_00008147 False 769 mRNA 0.48 6 36255064 36263886
TCONS_00008148 False 1419 mRNA 0.50 8 36258538 36279620
TCONS_00008149 True 633 mRNA 0.54 6 36263612 36279602

Neighbor

gene id symbol gene type direction distance location
XLOC_004264 NA coding downstream 7528 36242059 ~ 36246756 (-)
XLOC_004263 rrp9 coding downstream 24121 36215698 ~ 36230163 (-)
XLOC_004262 brk1 coding downstream 97313 36041617 ~ 36156971 (-)
XLOC_004261 setmar coding downstream 213735 36037076 ~ 36040549 (-)
XLOC_004260 itpr1b coding downstream 234279 35777329 ~ 36020005 (-)
XLOC_004266 sort1a coding upstream 859 36280523 ~ 36341189 (-)
XLOC_004267 psma5 coding upstream 63333 36342997 ~ 36350993 (-)
XLOC_004268 zbtb40 coding upstream 142569 36422233 ~ 36475124 (-)
XLOC_004269 NA coding upstream 204728 36484392 ~ 36687161 (-)
XLOC_004270 NA coding upstream 289260 36568924 ~ 36569266 (-)
XLOC_004063 CR854846.1 misc downstream 20126606 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 23562593 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 23632517 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 23662988 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 23741022 12512966 ~ 12513262 (-)
XLOC_004257 NA non-coding downstream 512840 35578730 ~ 35741444 (-)
XLOC_004255 NA non-coding downstream 812867 35438013 ~ 35441417 (-)
XLOC_004254 BX293991.1 non-coding downstream 1029145 35225022 ~ 35225139 (-)
XLOC_004249 NA non-coding downstream 1677178 34550847 ~ 34577106 (-)
XLOC_004271 CR457444.8 non-coding upstream 341053 36620717 ~ 36627322 (-)
XLOC_004274 BX248521.2 non-coding upstream 730497 37010161 ~ 37015507 (-)
XLOC_004275 BX248521.1 non-coding upstream 758756 37038420 ~ 37044539 (-)

Expression


Co-expression Network