XLOC_000427 (pou4f2)


Basic Information

Item Value
gene id XLOC_000427
gene name pou4f2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 36436936 ~ 36440301 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000731
AGTTTACCGACAGGTTGCATGGCTTACTGGCGCTCGCGACACGTCTCAAGCCACGGCACGCAACGGAGCGACCAACAAGAGCGCGTTCTTTCAGACTAGGCAGCAGCATCGCTAGATGAGCTATCTAGAGACTTGGTGCATCATCCTCTTCACGTTTGTTGCAACGCCAGAGACTTGAGACTTCCGAGCAGCGACTGGCTTGAACTCCAGTCGAAGAAGAAGGCGGAGTCTTAACTTATTAAAAGGAACTCGCCGAAGCTCGGTCGCaaatatgatgatgatgtctCTGAACAGCAAGCAGGCATTCGCCATGCCTCACACCAGTTTGGCCGAACCCAAGTACTCCAGCTTGCATTCCTCGTCCTCCTCCTCTACTCTGACTTCCAACGCGCCCTCGTCCTCCTGCTCCTCGTCCAGACACAGCAGCACGATCAGCAGCAGCGGCGGCGGCAGCTCGGAGGCGATGCGCCGAGCATGTCTCCCAACCCCACCGAGCAATATATTCGGTGGATTGGATGAGAGTTTGTTGGCCCGCGCGGAAGCTCTGGCGGCGGTGGATATAGTCTCGCAGACCAAAAGCCATCATCACCCACCTCATCACAGCCCCTTCAAGCCGGACGCAACCTACCACACCATGAACACGCTTCCGTGCACCTCCTCGTCCTCCTCGTCGTCCGTGCCCATCTCGCACCCGTCAGCTCTGGCGagccatcaccaccaccaccaccatcaccatCACCAGCCGCACCAGGCACTGGAGGGCGACCTGCTGGACCACATCACCCCGGGACTGGCCCTCGCCGGAGCCATGGCCGGGCCAGACGGCTCGGTGGTCTCCACGCCTGCGCACCCTGCCCACATGGCAGGCATGAACCACATGCACCAAGCTGCCATCAACATGGCTCACGCCCATGGGCTGCCATCCCACATGGGCTGCATGAGCGACGTGGACGCAGATCCCAGGGACTTGGAGGCATTCGCTGAGCGCTTTAAACAGCGTCGGATCAAACTCGGCGTGACCCAAGCGGATGTAGGGTCAGCGCTGGCCAGCCTGAAGATTCCTGGCGTTGGCTCTTTAAGCCAGAGTACCATCTGCCGGTTTGAGTCGCTCACGTTGTCCCACAACAACATGATCGCCCTGAAGCCCATCCTGCAAGCCTGGCTGGAGGAGGCAGAAAAGTCGCACCGGGAGAAACTCAACAAACCCGAGCTCTTCAACGGGGCCGAGAAGAAGAGGAAGCGGACCTCCATCGCGGCCCCTGAGAAAAGGTCCCTCGAAGCGTACTTTGCTATTCAGCCGCGTCCATCCTCAGAAAAAATCGCAGCAATCGCAGAGAAGCTGGACCTCAAAAAGAACGTAGTGCGGGTCTGGTTTTGCAACCAGAGGCAGAAACAAAAACGCATGAAATACTCGGCCTGCGTCTAGCTCGAGTAGAAGACCAACACAACGTGTCGAGAGACTCCTAAAACTGTTTAAAGACGATTTGTAAAATATTTCTTATCTCACACCTTTTTCAATCATCAATAACTTGTGCATTGAAGCAACATTTCATGACATTCAAAAGAGACATTTGAAAATACCAAATCACTGTCACGTATTACGCAAAGGGGATGTGGAATCATTTACAGGATCGTTTGACTGATCAAGTAAGACCATTCGTTTTTCCTCACTTATTCTAGCACACTTTCCGTATGAGAGGAGCAAGACTTTTTAAGCCTCAACCAGACAGCCTGTCTGAagctaaaataacacattttattaatttaccaGAAAGTATTGTGTATCAAGCTACACAAAACACCAGTAATTCCAAACTGATCAACCTGagggagaaaaaacaaacaaacaaaaaaaattcaggTCAAAAcaaggacagttttttttttttttcatttgaaataaTTATCTCTCAGCATGTCACACTTCAATCTTGTGTTGAATCAGGGTTTACTACTGAAAACAGAGGAAATCACCTGTTAAATCCAGGAACAATTCTGCAACAATATTAGATAACTAAACAGCTCCTTGTAAATGATTGATTTAGCTGTTACATGCATAATTTTGTCTGTCGTCTTCTTAATTACACTTCTGTGATTTTATAAATGATAAACCTATAGCCTACAATTAGGCAATGGGCGATGAGAATATCCATATTTTTCTTGTGAAGGCATAGGAATTTAGGACGTAAATTTGCTATAACTGACCTCTTAGTTAATAAAATAAGACATATTGGATCAACTGAACACAAGGAGAGGctcaattgttttcttttttggtaAGGGGATTTGTTCAGCCAAATATCTGTTGCAATACGCCTGCGCTCTAACGTGGCTATGTTTCTTATGAACTATTTATCATGTGAGGTAATGTTTACTTCATTACATATTTATTGGGATTCCCTCCACGTTTTTGCTTGAGAAAATCATATTGAGACAACAAGGAAAACGTGGCCCTCTGCAAACAGGGAAACTGCTTGAAACAggccaattttatttattcatgtttttcgTTCTCCTGACGGCACAATCAAGAGATATATGAgaacattttcttttaaattattttcatgtGTGTTATctgcttatttatttgtaaaaatatacgCGTATAATTATGGAGTCGTTGCTTGTTAAATTCACCATGTTTAGTAATGTTTTCTTAATGAAAAAGATGAATTCCATGGAAGCATTCACGTAAAATGTAAATATCTCATTTGGACATACACATAAAATATCCGTACAGGTATTTGCTGTATTGCTGTTTTAGCTGCGGTAACTGTAATGTCTGTTGCTTTAGGTTTAATTGTCGGGATcggtttattaatttattacatcGATGTATATTTAAGTTATTTGATAATTGAATTGAACTATGTGTttcattaaagaacaaaattttaacattttattcaacGTTCTCAATGGGGTTATTTATACAAACAGGCCTAAATGAAGGTTTCAAACGATTTCATGCACACATttcatgtgtaaataataattaaatgtttgtttgcttttgatcTCATTTTGCTTATTGTGTGGATTACACGTGTTTTCTTTTTA
>TCONS_00000732
TTATGACCTGGGATGTTGCATGTGTCTTGTTTTGTGTGTTCTTTATTcggatttcttttttttacatgctggaaatgttttaaaagcacGGAGTGGAGTGCGAATTCCCTGCTGACAGTTATGTGTGCATTCTATTTGCAATTGCAGAGCAATATATTCGGTGGATTGGATGAGAGTTTGTTGGCCCGCGCGGAAGCTCTGGCGGCGGTGGATATAGTCTCGCAGACCAAAAGCCATCATCACCCACCTCATCACAGCCCCTTCAAGCCGGACGCAACCTACCACACCATGAACACGCTTCCGTGCACCTCCTCGTCCTCCTCGTCGTCCGTGCCCATCTCGCACCCGTCAGCTCTGGCGagccatcaccaccaccaccaccatcaccatCACCAGCCGCACCAGGCACTGGAGGGCGACCTGCTGGACCACATCACCCCGGGACTGGCCCTCGCCGGAGCCATGGCCGGGCCAGACGGCTCGGTGGTCTCCACGCCTGCGCACCCTGCCCACATGGCAGGCATGAACCACATGCACCAAGCTGCCATCAACATGGCTCACGCCCATGGGCTGCCATCCCACATGGGCTGCATGAGCGACGTGGACGCAGATCCCAGGGACTTGGAGGCATTCGCTGAGCGCTTTAAACAGCGTCGGATCAAACTCGGCGTGACCCAAGCGGATGTAGGGTCAGCGCTGGCCAGCCTGAAGATTCCTGGCGTTGGCTCTTTAAGCCAGAGTACCATCTGCCGGTTTGAGTCGCTCACGTTGTCCCACAACAACATGATCGCCCTGAAGCCCATCCTGCAAGCCTGGCTGGAGGAGGCAGAAAAGTCGCACCGGGAGAAACTCAACAAACCCGAGCTCTTCAACGGGGCCGAGAAGAAGAGGAAGCGGACCTCCATCGCGGCCCCTGAGAAAAGGTCCCTCGAAGCGTACTTTGCTATTCAGCCGCGTCCATCCTCAGAAAAAATCGCAGCAATCGCAGAGAAGCTGGACCTCAAAAAGAACGTAGTGCGGGTCTGGTTTTGCAACCAGAGGCAGAAACAAAAACGCATGAAATACTCGGCCTGCGTCTAGCTCGAGTAGAAGACCAACACAACGTGTCGAGAGACTCCTAAAACTGTTTAAAGACGATTTGTAAAAT

Function

symbol description
pou4f2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and heart development. Predicted to be located in nucleus. Is expressed in eye and rhombomere. Orthologous to human POU4F2 (POU class 4 homeobox 2).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040401-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and heart development. Predicted to be located in nucleus. Is expressed in eye and rhombomere. Orthologous to human POU4F2 (POU class 4 homeobox 2).

Ensembl:

ensembl_id ENSDARG00000069737

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000731 False 3063 mRNA 0.45 2 36436936 36440301
TCONS_00000732 True 1147 mRNA 0.55 1 36437585 36438731

Neighbor

gene id symbol gene type direction distance location
XLOC_000426 lsm6 coding upstream 232936 36194761 ~ 36204000 (+)
XLOC_000425 BX324156.1 coding upstream 282559 36154261 ~ 36154377 (+)
XLOC_000424 zgc:152968 coding upstream 434162 35985813 ~ 36002774 (+)
XLOC_000423 mmaa coding upstream 466677 35956435 ~ 35970259 (+)
XLOC_000422 BX276105.1 coding upstream 482623 35949269 ~ 35954313 (+)
XLOC_000428 ednraa coding downstream 172359 36612660 ~ 36702355 (+)
XLOC_000429 tmem184c coding downstream 281821 36722122 ~ 36746569 (+)
XLOC_000430 arhgap10 coding downstream 331653 36771954 ~ 36913091 (+)
XLOC_000431 NA coding downstream 525699 36966000 ~ 36966282 (+)
XLOC_000432 FO704615.1 coding downstream 683341 37123642 ~ 37123772 (+)
XLOC_000421 NA non-coding upstream 538499 35896392 ~ 35898437 (+)
XLOC_000415 NA non-coding upstream 1343424 35034294 ~ 35093512 (+)
XLOC_000414 NA non-coding upstream 1575879 34857368 ~ 34861057 (+)
XLOC_000408 NA non-coding upstream 1982489 34450659 ~ 34454447 (+)
XLOC_000436 NA non-coding downstream 1150957 37591258 ~ 37638367 (+)
XLOC_000439 NA non-coding downstream 1393046 37833347 ~ 37834392 (+)
XLOC_000440 CT583668.1 non-coding downstream 1556158 37996459 ~ 37996577 (+)

Expression


Co-expression Network