XLOC_004274 (BX248521.2)


Basic Information

Item Value
gene id XLOC_004274
gene name BX248521.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37010161 ~ 37015507 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008168
GGTGGCAGCGGCATGGGTCGCAGTCCTCGTGGACGGTCTCCGACTCGCCTTATCAGAGTTTAAAACGTAAAGGTGGGGGTGAAAGTAGATGTATTAGAAGCATGCAAATGTTTCATAACTAAATTGCAGGAGATTTGCAGATGACACGAGAGGACCAGCTAGTACGACCACAGCCGATAGTCCAGTGAAAGACCAGGGTTTAGCTAGCAGATAAATGTTGAATTCCAGCGCATAACAACCATCCCACTTGAAACAACCTTTATGGCTCAGTTGGACAGCCATTTACCCTAGCTAACATCTATTTTCATCAAAAAGGAAGGTGTTTCTGGCCAAAAACTAGCCAAACATCTGGCGATCTTGCAAGagGCTACAAGTGACATCAATCTTAAATGGGCAGCAGTCCTCAAGGCACTTTGCATCTATCTTGGTGAGGATGATGAACATCTCATTCAGGAGTATAAGGACATTGAAGGAGATGGCATCCAGAGAGACCTGCAGAATTCCACCATGGGCGTATATGTCATCAACAAGGAGGGTGGAGAAATTGGAGCACATGATGACATTTATGTTGAAGGAGAAATCATTCTGGACAACATTGGATCTGTAGCCCAAGCATCTGCAATGATGCTGGGAGTCATCTATGTATTGAACTTGGCCTACCCCAAAGAGCTGAAATACTCTTATGAATTCATTCAAAATGTGCTCTTGAAAATGGATGGAGAAAGACTTTCCCCCCAAAGTCCTTGGACTAAAGAACAAAATCATTGCTGGACTGTAGGATTTCTTCAGCCACTCATGTAAACGCTGCTAAGCTGCATTTTTAAATCTGGTTTGGGAGGCGATAGAAAACATATAGTATGATGTAAAATGCAACCCTAGAAAATgtttcaaactgaaaacaaagtGAGTGGTGGACTGTAATACATAGCCACTGGTGTGAACATTTAAAGTTGTCATTGGATTTAGTCGAATATTCACCTGAAATAAAAATTGCAATCCTGTAAATAGGCCAGGTTTCTATCCACACTCAGCACAAaaagtatccatccatccattaacgCCATATGAATATTAGAAGTTAAGCGCTTTGAGATAAACAGTTGATGATGTCTGCACCATTATGGCATTGCATAAGAAGAGGACACAATGAGATGACGTCATTAAAAGAGCTCCAGTCAAAGTTCAAACAATGGAGAACCATGTGTAAAACAAGAAATTATGACAATTCTTGTTAGTTTCATGTGAGAATGTTACAGCCTCCTCATTGCTTCACACAGATGTGATGTTTTCATTtgacactatttttattttttttagattagctTAAGCTTCAGTTGACATTTAAGTCacgtttcattttatttagtaagTCTGTTTCCATATTTATACACCAACTTTTTCACCTCAGCCAaacataaaatcttttttttaattagtattttttgaaTGTAACTACAGTTTTTTGTAATTTCAGCATCAGGTCCTCAGTGTGCACTGTGTTGCAGCTGTGGACAGTtcttatattatagtattttttgttctgtATAGTACTGGTGTATTTTGTTACTTGTATATGTTTTGTTGTGTGTTAAAAGGCTTCCCTCCAAAGTTCtcctgtgtgtatatgtatacagcCACTATTGTGAATATTTAAAGCTGCACTAATGATGTTTTGGAATATTGACTCAATGTAAGTTTGCAGTTAAATATAATCTCACGCAAGTTATTCAGTGTTCGCTGTCTTCCAGCTAATCTGGTGCACTTGTTTTGTTACGAATGGTACAATGTATTTTATGTTAATGGATGATATACTGCATTTTGTTATAAGAAAACAATTTGAGAAATGATTACTGAGTTTCATTACTGCCATTCTTTAAGAGAGCAAAAATATCTCTTGGAtcacaaaaataaagttaaagttgAAAATA
>TCONS_00008169
CGATTGCAACGGACACTAGCCAATCAGAGGCAGGTCTTCGCGGAATGCGAGTAGGAAAAGTAAACAAGCTTCTCTTTGGTGGCAGCGGCATGGGTCGCAGTCCTCGTGGACGGTCTCCGACTCGCCTTATCAGAGTTTAAAACGTAAAGATAAATGTTGAATTCCAGCGCATAACAACCATCCCACTTGAAACAACCTTTATGGCTCAGTTGGACAGCCATTTACCCTAGCTAACATCTATTTTCATCAAAAAGGAAGGTGTTTCTGGCCAAAAACTAGCCAAACATCTGGCGATCTTGCAAGagGCTACAAGTGACATCAATCTTAAATGGGCAGCAGTCCTCAAGGCACTTTGCATCTATCTTGGTGAGGATGATGAACATCTCATTCAGGAGTATAAGGACATTGAAGGAGATGGCATCCAGAGAGACCTGCAGAATTCCACCATGGGCGTATATGTCATCAACAAGGAGGGTGGAGAAATTGGAGCACATGATGACATTTATGTTGAAGGAGAAATCATTCTGGACAACATTGGATCTGTAGCCCAAGCATCTGCAATGATGCTGGGAGTCATCTATGTATTGAACTTGGCCTACCCCAAAGAGCTGAAATACTCTTATGAATTCATTCAAAATGTGCTCTTGAAAATGGATGGAGAAAGACTTTCCCCCCAAAGTCCTTGGACTAAAGAACAAAATCATTGCTGGACTGTAGGATTTCTTCAGCCACTCATGTAAACGCTGCTAAGCTGCATTTTTAAATCTGGTTTGGGAGGCGATAGAAAACATATAGTATGATGTAAAATGCAACCCTAGAAAATgtttcaaactgaaaacaaagtGAGTGGTGGACTGTAATACATAGCCACTGGTGTGAACATTTAAAGTTGTCATTGGATTTAGTCGAATATTCACCTGAAATAAAAATTGCAATCCTGTAAATAGGCCAGGTTTCTATCCACACTCAGCACAAaaagtatccatccatccattaacgCCATATGAATATTAGAAGTTAAGCGCTTTGAGATAAACAGTTGATGATGTCTGCACCATTATGGCATTGCATAAGAAGAGGACACAATGAGATGACGTCATTAAAAGAGCTCCAGTCAAAGTTCAAACAATGGAGAACCATGTGTAAAACAAGAAATTATGACAATTCTTGTTAGTTTCATGTGAGAATGTTACAGCCTCCTCATTGCTTCACACAGATGTGATGTTTTCATTtgacactatttttattttttttagattagctTAAGCTTCAGTTGACATTTAAGTCacgtttcattttatttagtaagTCTGTTTCCATATTTATACACCAACTTTTTCACCTCAGCCAaacataaaatcttttttttaattagtattttttgaaTGTAACTACAGTTTTTTGTAATTTCAGCATCAGGTCCTCAGTGTGCACTGTGTTGCAGCTGTGGACAGTtcttatattatagtattttttgttctgtATAGTACTGGTGTATTTTGTTACTTGTATATGTTTTGTTGTGTGTTAAAAGGCTTCCCTCCAAAGTTCtcctgtgtgtatatgtatacagcCACTATTGTGAATATTTAAAGCTGCACTAATGATGTTTTGGAATATTGACTCAATGTAAGTTTGCAGTTAAATATAATCTCACGCAAGTTATTCAGTGTTCGCTGTCTTCCAGCTAATCTGGTGCACTTGTTTTGTTACGAATGGTACAATGTATTTTATGTTAATGGATGATATACTGCATTTTGTTATAAGAAAACAATTTGAGAAATGATTACTGAGTTTCATTACTGCCATTCTTTAAGAGAGCAAAAATATCTCTTGGAtcacaaaaataaagttaaagttgAAAATA
>TCONS_00008170
GGAGGTTGAACGTGATGCACTCATTTGAATGCTGCATCCAGCTCTGCATTTTCGCGCATAACAACCATCCCACTTGAAACAACCTTTATGGCTCAGTTGGACAGCCATTTACCCTAGCTAACATCTATTTTCATCAAAAAGGAAGGTGTTTCTGGCCAAAAACTAGCCAAACATCTGGCGATCTTGCAAGagGCTACAAGTGACATCAATCTTAAATGGGCAGCAGTCCTCAAGGCACTTTGCATCTATCTTGGTGAGGATGATGAACATCTCATTCAGGAGTATAAGGACATTGAAGGAGATGGCATCCAGAGAGACCTGCAGAATTCCACCATGGGCGTATATGTCATCAACAAGGAGGGTGGAGAAATTGGAGCACATGATGACATTTATGTTGAAGGAGAAATCATTCTGGACAACATTGGATCTGTAGCCCAAGCATCTGCAATGATGCTGGGAGTCATCTATGTATTGAACTT
>TCONS_00008844
AATCAGAGGCAGGTCTTCGCGGAATGCGAGTAGGAAAAGTAAACAAGCTTCTCTTTGGTGGCAGCGGCATGGGTCGCAGTCCTCGTGGACGGTCTCCGACTCGCCTTATCAGAGTTTAAAACGTAAAGGTGGGGGTGAAAGTAGATGTATTAGAAGCATGCAAATGTTTCATAACTAAATTGCAGGAGATTTGCAGATGACACGAGAGGACCAGCTAGTACGACCACAGCCGATAGTCCAGTGAAAGACCAGGGTTTAGCTAGCAGGTTGATGTTGTTCAACTTTGTTTCTGCTCTAAACACAAAGACCAATTATGTTGGCATTGCATTTATTGCTCCCAATTTTAAACTAATACTTTTTGTATAGAAGTGGAACATGACAAATCCAAATACTAATAGAGTTAGTGATATGGCATGAAGacagaataaataattaattaattttaattaaatttacaaattaattacatttacaaaactaAAAGCTGGCAGGGGTCTTGACTTGTTGACTCAGTTATAATATCTCACAATGTACTTAGTAGTAGTAGGCTTGTGGACTTTGTTAAGAGATTTTTCTGTTTCTGATTTCACAAACAGTTTATAATAAATCGCCATGATCTGACACAATGTAAATAACCTTACACAATTATTTATTCTAAATCACTGTACATGTGTTTATATTTCATGCATTGTTGTACAAACAATGGTAGTTAATTTAAGAAACATTGATGAGGTAAGCACATGCTTGCTCCCTGGGTTTTTACATTGCACTTTGACccattgtaaatataaaaaaaatattattaaggtTTAAATAAGGATACAGGATGCTGGTCCAGTTTTGATTTCTTGCCATTACTCTTGATTAATAGCAATACATCTGGCCAGAACACACTGTACACCTAATATAAGAAAATTTGATTATATCTATTTAATAGCTACAAAATATCATTACACCAATGGCTGATCACAGTGCTCTTTgtcttctgttgttgtttttatgtgtgtaGATAAATGTTGAATTCCAGCGCATAACAACCATCCCACTTGAAACAACCTTTATGGCTCAGTTGGACAGCCATTTACCCTAGCTAACATCTATTTTCATCAAAAAGGAAGGTGTTTCTGGCCAAAAACTAGCCAAACATCTGGCGATCTTGCAAGaggtaaacatgtttttacattttagtagAAAATATCATATACACTGTGGAGAAACCTGAAATGTACCTGTCTAGTGCCAGCCTTGATTATTTGTAAATGACAAGGTTCCTAAGGCTACATCCACACtactacatttttgttttaaaacggaGATCTTTTGGTACATTTGCACCTACCATGCAGACTGAACTGTCACCCTATCGCCCTACACATTCAGACCTGAAAATGAAGTCACAATACACTAACATTCTTTAGCTAAATAAGGCAGCCCATTTACAGAATGTATCATGAAGtcattgtgtatatatttttgagGTTACCACAGGTTTAAAGTATTCTAcagtttttagacattttttattatttattgtattttaatagttgTTGTCCTTTTACACAGGCTACAAGTGACATCAATCTTAAATGGGCAGCAGTCCTCAAGGCACTTTGCATCTATCTTGGTGAGGATGATGAACATCTCATTCAGGAGTA

Function

GO:

id name namespace
GO:0099041 vesicle tethering to Golgi biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105511

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008168 False 1928 lncRNA 0.38 4 37010161 37014671
TCONS_00008169 False 1867 lncRNA 0.37 4 37010161 37014748
TCONS_00008170 False 479 lncRNA 0.44 4 37011436 37015507
TCONS_00008844 True 1655 lncRNA 0.36 1 37013073 37014727

Neighbor

gene id symbol gene type direction distance location
XLOC_004273 cacna1da coding downstream 46159 36793473 ~ 36964002 (-)
XLOC_004272 cacna2d3 coding downstream 244327 36688794 ~ 36765834 (-)
XLOC_004269 NA coding downstream 323000 36484392 ~ 36687161 (-)
XLOC_004271 CR457444.8 coding downstream 382839 36620717 ~ 36627322 (-)
XLOC_004270 NA coding downstream 440895 36568924 ~ 36569266 (-)
XLOC_004275 BX248521.1 coding upstream 22913 37038420 ~ 37044539 (-)
XLOC_004276 NA coding upstream 70113 37085620 ~ 37095534 (-)
XLOC_004277 NINJ1 coding upstream 90133 37105640 ~ 37120954 (-)
XLOC_004278 CR352285.1 coding upstream 281994 37297501 ~ 37298097 (-)
XLOC_004279 CR352285.2 coding upstream 283864 37299371 ~ 37299485 (-)
XLOC_004063 CR854846.1 misc downstream 20882483 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 24318470 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 24388394 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 24418865 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 24496899 12512966 ~ 12513262 (-)
XLOC_004264 NA non-coding downstream 763405 36242059 ~ 36246756 (-)
XLOC_004257 NA non-coding downstream 1268717 35578730 ~ 35741444 (-)
XLOC_004282 NA non-coding upstream 460006 37475513 ~ 37476968 (-)

Expression


Co-expression Network