XLOC_004275 (BX248521.1)


Basic Information

Item Value
gene id XLOC_004275
gene name BX248521.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37038420 ~ 37044539 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008171
TATCAAGTGGCTTCCACAATATCACGTGACTGATGAAAATACAAACCTCAAACTGGTTTTGCCAATCAATCTGAAAGTGAAAATAGTTTTTATTGTCATGCCATTATTCAACGGTGCCATATCTGAAGAGTAAAACACACTTGAGAGTGAAACGTGTTTACAGTGAACTACGGTAAAAGCCAAATGGGTGCGTTGGATTTTTACAACCACTATAAATATTACCATTTTTTCTCTGTCTGCTTTGGTTTGGGCTGTGCACTGATTTCCTACAGGCCGTTTTACTCCCTTGTGTTGCCTTTAGTTTTTGGTTTGTTCTTCACGGGGGTTTTTGAAGGTGTGGGTGCAATTTTTGGTTTGCCAGCACACACTAAAAGATGTAAGGGTGGACCGTACCAATGGAAAGATGTCTTCTGGGGTTACTGTATGGCTTTTGTTGTGACCTTTCTTTATCTGAGCTCCTATCACGTTTATACTCTGTCTTGTGGCAGTGGTCTTGCTGTGTTTGCCTTAAGAGCGTCGATACGCAAATGTAATGCTCTATGtaaaagaaacttaaaaagaAAGCGTCGCTAGCAAAATCGAACTTAGTGAgGTGTCCATGTATATCAAAGCGAACTGTGTGATTTCATTGTagacatttaaatgaatattgtttattatgttgTTCTTAACATATTTGCTtttcaaaaaatgcattttacaaaTGTCTTAATTCATAATTTATAAAGTCTCTTGCACAAACCATGACTgcatttgttaaaaacaaaatacataaaatgaataaaataaagtattgtgacattattaaaatgtaaaagctttttttctggtttaaagggcacctattttaaccctttttcaagatttaagacaagtcttttgtgtctgcagaata
>TCONS_00008845
atttaataagcTCAAAGGTTGGTTGAAGTTTTTACTGATACCCTTGTGTTGCCTTTAGTTTTTGGTTTGTTCTTCACGGGGGTTTTTGAAGGTGTGGGTGCAATTTTTGGTTTGCCAGCACACACTAAAAGATGTAAGGGTGGACCGTACCAATGGAAAGATGTCTTCTGGGGTTACTGTATGGCTTTTGTTGTGACCTTTCTTTATCTGAGCTCCTATCACGGTACAGTATGCAGACTTCACAAAATCAAAATTCTGCGCTACCATCACaggaaattttttttaagttgaatctaTTTAACTATGTTACTGTTTAACAGTATGTTAGACTATTAAAGGCAAGGCACAGCAGgcaattaaaaacacatttaagtaTTTCTTTTATGGCactttgtgtctgtagatttcaattacaatacatattttaaaggtTATTTTCTAATatgcattttgtttgtctacTGAACTTACAGCTACAAATTTTCACTTCAGAAGCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008171 False 895 lncRNA 0.35 9 37038420 37044539
TCONS_00008845 True 498 lncRNA 0.35 4 37040376 37043920

Neighbor

gene id symbol gene type direction distance location
XLOC_004274 BX248521.2 coding downstream 22913 37010161 ~ 37015507 (-)
XLOC_004273 cacna1da coding downstream 74418 36793473 ~ 36964002 (-)
XLOC_004272 cacna2d3 coding downstream 272586 36688794 ~ 36765834 (-)
XLOC_004269 NA coding downstream 351259 36484392 ~ 36687161 (-)
XLOC_004276 NA coding upstream 41081 37085620 ~ 37095534 (-)
XLOC_004277 NINJ1 coding upstream 61101 37105640 ~ 37120954 (-)
XLOC_004278 CR352285.1 coding upstream 252962 37297501 ~ 37298097 (-)
XLOC_004279 CR352285.2 coding upstream 254832 37299371 ~ 37299485 (-)
XLOC_004280 erc2 coding upstream 266342 37310881 ~ 37425407 (-)
XLOC_004063 CR854846.1 misc downstream 20910742 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 24346729 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 24416653 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 24447124 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 24525158 12512966 ~ 12513262 (-)
XLOC_004271 CR457444.8 non-coding downstream 411098 36620717 ~ 36627322 (-)
XLOC_004270 NA non-coding downstream 469154 36568924 ~ 36569266 (-)
XLOC_004264 NA non-coding downstream 791664 36242059 ~ 36246756 (-)
XLOC_004282 NA non-coding upstream 430974 37475513 ~ 37476968 (-)
XLOC_004283 NA non-coding upstream 548469 37593008 ~ 37603981 (-)

Expression


Co-expression Network