LOC118948643


Basic Information

Item Value
gene id LOC118948643
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493702.1
NCBI id JAAXML020000555.1
chromosome length 476391
location 285596 ~ 289526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005042132.1
cgacctcagatcagacgagacaacccgctgaatttaagcatattactaagcggaggaaaagaaactaaccaggattccctcagtagcggcgagcgaagagggaagagcccaacaccgaatccctgtccgtctggcgggcacgggaaatgtggtgtatagaagaccgctttgcccggtgtcgatcgggggcctgagtccttctgatcgaggctcagcccgtggacggtgtgaggccggtaacggcccccgtcgcgccggggtccggtcttttcagagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatctaaggctaaataccgtcacgagaccgatagacgacaagtaccgtaagggaaagttgaaaagaactttgaagagagagttcaagagggcgtgaaaccgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtaaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccctacggggtcgggcgcaccaccggcccgtctcgcccgctttgtcggggaggtggagcgtgagcgcatgcgataggacccgaaagatggtgaactatgcctgggcagggcgaagccagaggaaactctggtggaggtccgtagcggtcctgacgtgcaaatcggtcgtccgacctgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgggtaagaagcccggctcgctggcttggagccgggcgtggaatgcgagccgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactagccctgaaaatggatggcgctggagcgtcgggcccatacccggccgtcgctggcaacgagagcctcgagggctatgccgcgacgagtaggagggccgccgcggtgagcacggaagcctagggcgcgggcccgggtggagccgccgcgggtgcagatcttggtggtagtagcaaatattcaaacgagaactttgaaggccgaagtggagaagggttccatgtgaacagcagttgaacatgggtcagtcggtcctaagagatgggcgaacgccgttcggaagggaggggcgatggcctccgtcgcccccggccgatcgaaagggagtcgggttcagatccccgaatccggagtggcggagatgggcgccgcgaggcgtccagtgcggtaacgcgaccgatcccggagaagctggcgggagccccggggagagttctcttttctttgtgaagggcagggcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgagctctcgctggcccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaatgtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctgggggagcagttgctccgcctcctttctctcgccactgctggaagttcgttgtgcggcccatctcgtgggctctcgtttgtggtctcgcaaggggctgcttatgggggttcattggggtggtgtccgtcggcgtcccgaaggtggatcggtgggggtctggttggtggttggcagcggcgactctggacgcgtgccgggcccttctcgcggatctccccagctacggtgctcgctggccccgtttacgcggggtctccggcgggttgcctcggccggcgcctagcagctgacttagaactggtgcggaccaggggaatccgactgtttaattaaaacaaagcatcgcgaaggcccaaggtgggtgatgacgcgatgtgatttctgcccagtgctctgaatgtcaaagtgaagaaattcaatgaagcgcgggtaaacggcgggagtaactatgactctcttaaggtagccaaatgcctcgtcatctaattagtgacgcgcatgaatggatgaacgagattcccactgtccctacctactatctagcgaaaccacagccaagggaacgggcttggcggaatcagcggggaaagaagaccctgttgagcttgactctagtctggcactgtgaagagacatgagaggtgtagaataagtgggaggccccggccgccggtgaaataccactactcttatcgttttttcacttacccggtgaggcggggaggcgagccccgagcgggctctcgcttctggtttcaagcacccggctcgcgtcgggtgcgacccgctccggggacagtggcaggtggggagtttgactggggcggtacacctgtcaaacggtaacgcaggtgtcctaaggcgagctcagggaggacagaaacctcccgtggagcagaagggcaaaagctcgcttgatcttgattttcagtatgaatacagaccgtgaaagcggggcctcacgatccttctgactttttgggttttaagcaggaggtgtcagaaaagttaccacagggataactggcttgtggcggccaagcgttcatagcgacgtcgctttttgatccttcgatgtcggctcttcctatcattgtgaagcagaattcaccaagcgttggattgttcacccactaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactgatgatgtgttgttgcaatagtaatcctgctcagtacgagaggaaccgcaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgcgaagctaccatctgtgggattatgactgaacgcctctaagtcagaatcccccctaaacgtaatgataccgtagcgccgtggagcttcggttggcccgggatagcctgcctcttttggcaggtgagtagagccgttcgtgacagggtcggggtgcggccgaatgagttgccgcccctctcctgatgcgcaccgcatgtttgtggagaacctggtgctaaatcactcgtagacgacctgattctgggtcagggtttcgtgcgtagcagagcagctcactcgctgcgatctattgaaagtcagccctcgatccaagcttttgt

Function

NR:

description
serine/arginine repetitive matrix protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005042132.1 True 3931 mRNA 0.59 1 285596 289526

Neighbor

gene id symbol gene type direction distance location
LOC118948660 NA coding upstream 375 285068 ~ 285221 (+)
LOC118948684 NA coding upstream 1099 282662 ~ 284497 (+)
LOC118948642 NA coding upstream 17766 263900 ~ 267830 (+)
LOC118948659 NA coding upstream 22071 263372 ~ 263525 (+)
LOC118948670 NA coding upstream 22795 260967 ~ 262801 (+)
LOC118948685 NA coding downstream 26425 315951 ~ 317786 (+)
LOC118948662 NA coding downstream 28831 318357 ~ 318510 (+)
LOC118948644 NA coding downstream 29359 318885 ~ 322815 (+)
LOC118948686 NA coding downstream 50165 339691 ~ 341526 (+)
LOC118948663 NA coding downstream 52571 342097 ~ 342250 (+)
LOC118948682 NA non-coding upstream 45735 239269 ~ 241104 (+)
G2356430 NA non-coding upstream 55609 187654 ~ 229987 (+)
G2356428 NA non-coding upstream 193416 91731 ~ 92180 (+)
G2356426 NA non-coding upstream 199880 85316 ~ 85716 (+)
G2356437 NA non-coding downstream 2753 292279 ~ 387436 (+)
G2356438 NA non-coding downstream 13383 302909 ~ 304470 (+)
LOC118948645 NA non-coding downstream 53148 342625 ~ 390384 (+)
G2356449 NA non-coding downstream 72842 362368 ~ 381601 (+)
G2356445 NA non-coding downstream 74518 364044 ~ 382134 (+)
G2356442 zgc:158463 other downstream 71304 360830 ~ 379442 (+)
G2356444 NA other downstream 75158 364684 ~ 383460 (+)
G2356447 NA other downstream 104064 393590 ~ 414978 (+)

Expression

LOC118948643 Expression in all Baseline Samples

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Co-expression Network