LOC118948646


Basic Information

Item Value
gene id LOC118948646
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493702.1
NCBI id JAAXML020000555.1
chromosome length 476391
location 393400 ~ 399551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005042135.1
cgacctcagatcagacgagacaacccgctgaatttaagcatattactaagcggaggaaaagaaactaaccaggattccctcagtagcggcgagcgaagagggaagagcccaacaccgaatccctgtccgtctggcgggcacgggaaatgtggtgtatagaagaccgctttgcccggtgtcgatcgggggcctgagtccttctgatcgaggctcagcccgtggacggtgtgaggccggtaacggcccccgtcgcgccggggtccggtcttttcagagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatctaaggctaaataccgtcacgagaccgatagacgacaagtaccgtaagggaaagttgaaaagaactttgaagagagagttcaagagggcgtgaaaccgttgagaggtaaacgggtggggtccgcgcagtctgcccggaggattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccgggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggcgaaggtggctaccggtttcggccgtgagctttacagcgcccctgctccgtactcgccgctttccggggccgaggacttagtacccgctgcgtcatgtccccctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtaaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtctaacgcatgcgcaagtcagagggttttctccgaacacaccccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccctacggggtcgggcgcaccaccggcccgtctcgcccgctttgtcggggaggtggagcgtgagcgcatgcgataggacccgaaagatggtgaactatgcctgggcagggcgaagccagaggaaactctggtggaggtccgtagcggtcctgacgtgcaaatcggtcgtccgacctgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgggtaagaagcccggctcgctggcttggagccgggcgtggaatgcgagccgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactagccctgaaaatggatggcgctggagcgtcgggcccatacccggccgtcgctggcaacgagagcctcgagggctatgccgcgacgagtaggagggccgccgcggtgagcacggaagcctagggcgcgggcccgggtggagccgccgcgggtgcagatcttggtggtagtagcaaatattcaaacgagaactttgaaggccgaagtggagaagggttccatgtgaacagcagttgaacatgggtcagtcggtcctaagagatgggcgaacgccgttcggaagggaggggcgatggcctccgtcgcccccggccgatcgaaagggagtcgggttcagatccccgaatccggagtggcggagatgggcgccgcgaggcgtccagtgcggtaacgcgaccgatcccggagaagctggcgggagccccggggagagttctcttttctttgtgaagggcagggcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgagctctcgctggcccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaatgtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctgggggagcagttgctccgcctcctttctctcgccactgctggaagttcgttgtgcggcccatctcgtgggctctcgtttgtggtctcgcaaggggctgcttatgggggttcattggggtggtgtccgtcggcgtcccgaaggtggatcggtgggggtctggttggtggttggcagcggcgactctggacgcgtgccgggcccttctcgcggatctccccagctacggtgctcgctggccccgtttacgcggggtctccggcgggttgcctcggccggcgcctagcagctgacttagaactggtgcggaccaggggaatccgactgtttaattaaaacaaagcatcgcgaaggcccaaggtgggtgatgacgcgatgtgatttctgcccagtgctctgaatgtcaaagtgaagaaattcaatgaagcgcgggtaaacggcgggagtaactatgactctcttaaggtagccaaatgcctcgtcatctaattagtgacgcgcatgaatggatgaacgagattcccactgtccctacctactatctagcgaaaccacagccaagggaacgggcttggcggaatcagcggggaaagaagaccctgttgagcttgactctagtctggcactgtgaagagacatgagaggtgtagaataagtgggaggccccggccgccggtgaaataccactactcttatcgttttttcacttacccggtgaggcggggaggcgagccccgagcgggctctcgcttctggtttcaagcacccggctcgcgtcgggtgcgacccgctccggggacagtggcaggtggggagtttgactggggcggtacacctgtcaaacggtaacgcaggtgtcctaaggcgagctcagggaggacagaaacctcccgtggagcagaagggcaaaagctcgcttgatcttgattttcagtatgaatacagaccgtgaaagcggggcctcacgatccttctgactttttgggttttaagcaggaggtgtcagaaaagttaccacagggataactggcttgtggcggccaagcgttcatagcgacgtcgctttttgatccttcgatgtcggctcttcctatcattgtgaagcagaattcaccaagcgttggattgttcacccactaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactgatgatgtgttgttgcaatagtaatcctgctcagtacgagaggaaccgcaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgcgaagctaccatctgtgggattatgactgaacgcctctaagtcagaatcccccctaaacgtaatgataccgtagcgccgtggagcttcggttggcccgggatagcctgcctcttttggcaggtgagtagagccgttcgtgacagggtcggggtgcggccgaatgagttgccgcccctctcctgatgcgcaccgcatgtttgtggagaacctggtgctaaatcactcgtagacgacctgattctgggtcagggtttcgtgcgtagcagagcagctcactcgctgcgatctattgaaagtcagccctcgatccaagcttttgt
>TU2702252
agtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgggtaagaagcccggctcgctggcttggagccgggcgtggaatgcgagccgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactcgccctgaaaatggatggcgctggagcgtcgggcccatacccggccgtcgctggcaacgagagcctcgagggctatgccgcgacga
>TU2702253
agtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgggtaagaagcccggctcgctggcttggagccgggcgtggaatgcgagccgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactcgccctgaaaatggatggcgctggagcgtcgggcccatacccggccgtcgctggcaacgagagcctcgagggctatgccgcgacga
>TU2702245
gcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgagctctcgctggcccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaatgtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctggggggagcagttgctccgcctcctttctctcgccactgctggaagttcgttgtgcggcccatctcgtgggctctcgtttgtg
>TU2702247
gcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgagctctcgctggcccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaatgtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctggggggagcagttgctccgcctcctttctctcgccactgctggaagttcgttgtgcggcccatctcgtgggctctcgtttgtg

Function

NR:

description
serine/arginine repetitive matrix protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005042135.1 False 3931 mRNA 0.59 1 393400 397330
TU2702252 False 452 lncRNA 0.58 2 394600 398795
TU2702253 False 452 lncRNA 0.58 2 394600 398795
TU2702245 False 383 lncRNA 0.63 2 395422 399551
TU2702247 True 383 lncRNA 0.63 2 395422 399551
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118948666 NA coding upstream 375 392872 ~ 393025 (+)
LOC118948688 NA coding upstream 1099 390466 ~ 392301 (+)
LOC118948652 NA coding upstream 8898 380574 ~ 384502 (+)
LOC118948665 NA coding upstream 13203 380044 ~ 380197 (+)
LOC118948693 zgc:158463 coding upstream 13928 377636 ~ 379472 (+)
LOC118948689 NA coding downstream 12443 409773 ~ 411608 (+)
LOC118948667 NA coding downstream 14849 412179 ~ 412332 (+)
LOC118948647 NA coding downstream 15377 412707 ~ 416637 (+)
LOC118948690 NA coding downstream 27999 425329 ~ 427164 (+)
LOC118948668 NA coding downstream 30404 427734 ~ 427887 (+)
LOC118948645 NA non-coding upstream 3016 342625 ~ 390384 (+)
G2356437 NA non-coding upstream 5964 292279 ~ 387436 (+)
G2356446 NA non-coding upstream 9213 366108 ~ 384187 (+)
G2356444 NA non-coding upstream 9940 364684 ~ 383460 (+)
G2356445 NA non-coding upstream 11266 364044 ~ 382134 (+)
G2356442 zgc:158463 other upstream 13958 360830 ~ 379442 (+)

Expression

LOC118948646 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1250.
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LOC118948646 Expression in each Bioproject

Bar chart with 21 bars.
LOC118948646 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30000.
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Co-expression Network