Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

economic fish

G2358490

Basic Information

Item	Value
gene id	G2358490
gene name	NA
gene type	non-coding
species	rainbow trout (Oncorhynchus mykiss)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NW_023493711.1
NCBI id	JAAXML020000834.1
chromosome length	346706
location	55264 ~ 55494 (-)
genome version	USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2705329
GCTAGGGTCACAACCCCCCCACCTCACTCTGGTTAGGGTCACGACCCCCCAAATCACTCTGTTAaggtgtgtgttatggtgtgtgtgttacagacagaCTGTGATGAGGGGATGTGGTTGGTTGTGTGTTAaggtgtgtgttatggtgtgtgtgttacagacagaCTGTGATGAGGGGATGTGGTTGGTTGTGTgttaaggtgtgtgtgttacaggcAGACTGTGATGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU2705329	True	231	lncRNA	0.50	1	55264	55494

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC110514817	NA	coding	upstream	104876	160370 ~ 333182 (-)
G2358488	NA	non-coding	downstream	3390	48674 ~ 51874 (-)
G2358494	NA	non-coding	upstream	3580	59074 ~ 59313 (-)
G2358498	NA	non-coding	upstream	6429	61923 ~ 62141 (-)
G2358500	NA	non-coding	upstream	6880	62374 ~ 62932 (-)
G2358501	NA	non-coding	upstream	7565	63059 ~ 63621 (-)
G2358591	NA	non-coding	upstream	39706	95200 ~ 95413 (-)
G2358484	NA	other	downstream	35813	19096 ~ 19451 (-)
G2358603	NA	other	upstream	63696	119190 ~ 119404 (-)

Expression

Co-expression Network