XLOC_004286 (yod1)


Basic Information

Item Value
gene id XLOC_004286
gene name yod1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37708384 ~ 37720266 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008185
AAGTGAACAGGTACAGGATGCTGCGTCTGCGTTGCAAAGCCAAGAACGGGACCCATCTGATGCAGGGCCTTACACACCAATCTTGTGTTCAGGAACTCAAAGATAAGATCGAGGAGCTGACAGGGATACCATGCGATGTACAGAAAATCATGGTCGGTTATCCACCGTCCAGCCTGGATCTACGCAACGGTGAAGCCCATCTCAAAGACTACCCTATCAAATCAGGAGACACTTTGATTGTAGAGGAGGAGAAGAACAAACCCAAACCCCCAGTGCAACCCACTGTGACCAAAGGGCCCAGCTTTGAAGTGACCCCAGTCGTCGAGCGCCGCGTAGTGCCCGCCGACAACTCCTGTTTGTTTACTAGTGTGAACTACGTAATGGAAGGCGGTGTGTACGACCCGGCCTGCGCGTCCGAAATGCGTGGTCTCATCGCACAAATAGTAGCCAGCGACCCCACCGCGTATTCAGAAGCCGTTTTGGGCAAAACCAATGAAGAATACTGCACATGGATCCGTCGAGATGACACGTGGGGAGGCGCCATTGAAGTTTCCATCCTCTCCAAGTTCTACCAATGTGAAATCTGCGTTGTGGACACTCAAACGGTACGCGTGGATCGATTCGGCGAAGATGCTGGGTACACCAAACGAGTGCTGCTTATTTATGACGGAATTCATTACGATCCGCTTCAGAAGGTGTTGCCTGGTTCTGACGTCCCTGCGCAGACCGTGTTCTCCACCGTAGATGATGTTATTTTAGCTCAAGCGCTGGAACTAGCGGACGAAGCACGGAGGAAACGGCAGTTTACAGATGTCAACCGGTTTGCTTTGCGCTGTATGGTGTGCCAGACTGGCCTGGTAGGGCAGAAGGAGGCAAGGGAACATGCCAAGGAGACGGGCCACACCAATTTTGGAGAGGTGTGATGTTCTCGGCTCCATATTTAAAATCACCGCCGCGTCACTGCCACGCCATCTGACATGGTACCTGCTCTTTCACTGCTGCCTGTTCCAGCTCAGTACAGTCCTCTACCTCACATTGTCTTCAGGAGACTTTCACGTGTCGAGTTACCCAAGAATACAGTGTTCTTTTGGTTTCAGTTTACTCTTGAAGTATtcaattgtgctttttttttctttgcctgaCGTGAGGACAAGCCGTCTGTTTAAACCAAAATGTTTAAAAGGGATTTTCCACTACTTTCAACCCGTCTTGTTTGTTACGATGATTACAATACTCGTATTATGCTGATTTGAAACACATCCAGGTCATATTTCCACTCAGAAAAAGAAAGAATTTCTATACTGTTCTGCTAATATCACTACGCTTTCAAGAGAATCtggcacacacatatacatcctCCTGCagtaatttgatatatttttgaaGAATTTCTACATTACATGTTTGCTTCATTTTGATTCGTTCGATTGCAATGATTTTTAATTAAGCTAAAACTTGCTGTAttacattttaaagggatagttcagcctgTAATGACAACAaactcactatttattcaccccagtttctttcttctgttgagcacaataaaatatattttgaagattgacttccatagagggaaaaacaatggaagtcaatggttaccggttgcCTGCATACTTTAACATATCTTCTCTTGTTTTCAACATATAAACTCAAAGTTTGAAATGAGtaaagtttaattaaataattacagattggtcatttttggctgaaatattcctttaatatATTGTGGAAAATGTATGAAAGTAACGTATGCTAAATATAAGTCTTAATTCTGGTGTTAAATGTGACCTAGACATGTTTTTAACCCATGACCTCATGTAAAAAACTTTTAGAACTGACAATATGTATGGCAGAATCGCAGAAATACTGGATTAAAATCGTCTAGGGGGatgaatcgagatcgcgatctaaTTTCTACATTACAggcttgctttatttttattccttcatTTGCTAATTTTTAATTAAGCTAAAACTTGCTGTATTACATATTAAAGGGATGTTTCAGCCTGTAATGACAGTGAACGCACTATTCactcaacctcaagtggttccaaacctttgagtttctttcttctgttgtacacaaaagaagatattttgaagaatgctgacaacgggtaaccattgacttccatagtaggaaatacaatggaagtcaatggttactggatTCCTGCGTACTTCaaaatatttatgattaaataatgacagatttgtcatttttggctgaaatattcctttaatatATTGTGGAAAAGGTATGAAAGTAACAGATGCTAAATATAAGTCTTTATTCTGGTGTTAAATGTGACCTAGACATGTTTTTAACCCATGACCTCATGTAAAAAACTTTTAGAACTGACAGTATGGACAATGCTAGCTAAACTATTGATAGTACTAAACAACTAATGAATTTAAGCAGTGTTAAGCATTAATATTTTGACATTATGAGTTCATCGAATCATGTATGGTAATCTCTCCACATGCAATGTGCTTTTGGATGTGGCCAGATAAAACGTTGAAGCAAAGCTGAAGACATGCCTTTGATGATTTCTAATTTACACATGGcattaatgtatttatattataccTGTCTTTGTAAGGTCATAAGCACAGCTTCTGAACAATCGACGATGGCACTACATGAAGTCTTACGTTCACTGGCTCCATTGTACCTGTTACTTGAAATAGTCACACAAAATGAGTTCTCAATATGGTTTGTCAGTAAGATAGCTAGCTAGAAACATGTGGGTTTTACAATTGAAGTGGACAACCAATGGTGCTGATAGTAGATTCTCACCGAGTCtgtagattttgtttttgtttttctctgaaGGGCACTTGTGTAATTTCTGCAAACGACCACACAAGATTGTTTTATGCAAAATGTGTGCATTCTTTCTCAAGTGTCAATGTCGTATTGTTAGCACGAGTGATTGTAGTGAAATTTGAAAAGGAGAGATGTGTAATATTGAACATATTCCAGGCATTTTACGGAGGAACACGTTTAGATGTAgaaaagtattaaagtattagCTGTGGATGAACTGTAGAGAGAAGACCGCTTGTAAGGCCTGAAGGTGATGTACATTCTCAGTATTTTCTGTCAGGTACAATCCACAAGGGTGTTTACTCGTttgcagcttttttattttggagaaatgttgccATTGCAAGGCCAaaggacttttattttttattattttgcagtgctttatttatttttaattgccgTGATCAGTGTTTTATCTACACTAAAGTAACTTTGAGTGAGGAACTGCATGTACAGCACTCATTGCTACAGAATCACTGGTTAATACTGGGTTAAtgataaataaacttgaattgatataaatattttgtttgtgtgtttttttttcctgcttatcAATTGGTGTTTACTAAAATACAAGCATTACTACTACAATTACCAACACTAGAAAATTTCCATTTAAGCTTTATTGATTCTGGAAAAAAAACGTTGACTTTATTAAGCACTACATCCCATTGTCAAATGTTGCCAGATATTATTGAATGTTTTATCTGATAGTTGCGAGTTATAAACATTTCTAGGCTattctaacattttttaaattaaaattaccaCATGTTTTGATATGTATTtagtagggttgtcacgataaaaacttaaataatctTACAAtaccagggttcaacgctaaagaTTTTTACTACTGGCtcgatcggaccagtggttcagatttttacttgccctgtaAATGTTTTCACTGGCCcgaccaaaaaataaatacaaattaatagctatttcttagccacaaattaaaAATTGT
>TCONS_00008186
GTACACAAGGTGTGTGTGACGTACCGCGCAGGCTTTTGCACGGTCAGTGTGTCTGTTGTTGTTTAAAGAGACGCTCGGCGAAGTGAACAGGTACAGGATGCTGCGTCTGCGTTGCAAAGCCAAGAACGGGACCCATCTGATGCAGGGCCTTACACACCAATCTTGTGTTCAGGAACTCAAAGATAAGATCGAGGAGCTGACAGGGATACCATGCGATGTACAGAAAATCATGGTCGGTTATCCACCGTCCAGCCTGGATCTACGCAACGGTGAAGCCCATCTCAAAGACTACCCTATCAAATCAGGAGACACTTTGATTGTAGAGGAGGAGAAGAACAAACCCAAACCCCCAGTGCAACCCACTGTGACCAAAGGGCCCAGCTTTGAAGTGACCCCAGTCGTCGAGCGCCGCGTAGTGCCCGCCGACAACTCCTGTTTGTTTACTAGTGTGAACTACGTAATGGAAGGCGGTGTGTACGACCCGGCCTGCGCGTCCGAAATGCGTGGTCTCATCGCACAAATAGTAGCCAGCGACCCCACCGCGTATTCAGAAGCCGTTTTGGGCAAAACCAATGAAGAATACTGCACATGGATCCGTCGAGATGACACGTGGGGAGGCGCCATTGAAGTTTCCATCCTCTCCAAGTTCTACCAATGTGAAATCTGCGTTGTGGACACTCAAACGGTACGCGTGGATCGATTCGGCGAAGATGCTGGGTACACCAAACGAGTGCTGCTTATTTATGACGGAATTCATTACGATCCGCTTCAGAAGGTGTTGCCTGGTTCTGACGTCCCTGCGCAGACCGTGTTCTCCACCGTAGATGATGTTATTTTAGCTCAAGCGCTGGAACTAGCGGACGAAGCACGGAGGAAACGGCAGTTTACAGATGTCAACCGGTTTGCTTTGCGCTGTATGGTGTGCCAGACTGGCCTGGTAGGGCAGAAGGAGGCAAGGGAACATGCCAAGGAGACGGGCCACACCAATTTTGGAGAGGTGTGATGTTCTCGGCTCCATATTTAAAATCACCGCCGCGTCACTGCCACGCCATCTGACATGGTACCTGCTCTTTCACTGCTGCCTGTTCCAGCTCAGTACAGTCCTCTACCTCACATTGTCTTCAGGAGACTTTCACGTGTCGAGTTACCCAAGAATACAGTGTTCTTTTGGTTTCAGTTTACTCTTGAAGTATtcaattgtgctttttttttctttgcctgaCGTGAGGACAAGCCGTCTGTTTAAACCAAAATGTTTAAAAGGGATTTTCCACTACTTTCAACCCGTCTTGTTTGTTACGATGATTACAATACTCGTATTATGCTGATTTGAAACACATCCAGGTCATATTTCCACTCAGAAAAAGAAAGAATTTCTATACTGTTCTGCTAATATCACTACGCTTTCAAGAGAATCtggcacacacatatacatcctCCTGCagtaatttgatatatttttgaaGAATTTCTACATTACATGTTTGCTTCATTTTGATTCGTTCGATTGCAATGATTTTTAATTAAGCTAAAACTTGCTGTAttacattttaaagggatagttcagcctgTAATGACAACAaactcactatttattcaccccagtttctttcttctgttgagcacaataaaatatattttgaagattgacttccatagagggaaaaacaatggaagtcaatggttaccggttgcCTGCATACTTTAACATATCTTCTCTTGTTTTCAACATATAAACTCAAAGTTTGAAATGAGtaaagtttaattaaataattacagattggtcatttttggctgaaatattcctttaatatATTGTGGAAAATGTATGAAAGTAACGTATGCTAAATATAAGTCTTAATTCTGGTGTTAAATGTGACCTAGACATGTTTTTAACCCATGACCTCATGTAAAAAACTTTTAGAACTGACAATATGTATGGCAGAATCGCAGAAATACTGGATTAAAATCGTCTAGGGGGatgaatcgagatcgcgatctaaTTTCTACATTACAggcttgctttatttttattccttcatTTGCTAATTTTTAATTAAGCTAAAACTTGCTGTATTACATATTAAAGGGATGTTTCAGCCTGTAATGACAGTGAACGCACTATTCactcaacctcaagtggttccaaacctttgagtttctttcttctgttgtacacaaaagaagatattttgaagaatgctgacaacgggtaaccattgacttccatagtaggaaatacaatggaagtcaatggttactggatTCCTGCGTACTTCaaaatatttatgattaaataatgacagatttgtcatttttggctgaaatattcctttaatatATTGTGGAAAAGGTATGAAAGTAACAGATGCTAAATATAAGTCTTTATTCTGGTGTTAAATGTGACCTAGACATGTTTTTAACCCATGACCTCATGTAAAAAACTTTTAGAACTGACAGTATGGACAATGCTAGCTAAACTATTGATAGTACTAAACAACTAATGAATTTAAGCAGTGTTAAGCATTAATATTTTGACATTATGAGTTCATCGAATCATGTATGGTAATCTCTCCACATGCAATGTGCTTTTGGATGTGGCCAGATAAAACGTTGAAGCAAAGCTGAAGACATGCCTTTGATGATTTCTAATTTACACATGGcattaatgtatttatattataccTGTCTTTGTAAGGTCATAAGCACAGCTTCTGAACAATCGACGATGGCACTACATGAAGTCTTACGTTCACTGGCTCCATTGTACCTGTTACTTGAAATAGTCACACAAAATGAGTTCTCAATATGGTTTGTCAGTAAGATAGCTAGCTAGAAACATGTGGGTTTTACAATTGAAGTGGACAACCAATGGTGCTGATAGTAGATTCTCACCGAGTCtgtagattttgtttttgtttttctctgaaGGGCACTTGTGTAATTTCTGCAAACGACCACACAAGATTGTTTTATGCAAAATGTGTGCATTCTTTCTCAAGTGTCAATGTCGTATTGTTAGCACGAGTGATTGTAGTGAAATTTGAAAAGGAGAGATGTGTAATATTGAACATATTCCAGGCATTTTACGGAGGAACACGTTTAGATGTAgaaaagtattaaagtattagCTGTGGATGAACTGTAGAGAGAAGACCGCTTGTAAGGCCTGAAGGTGATGTACATTCTCAGTATTTTCTGTCAGGTACAATCCACAAGGGTGTTTACTCGTttgcagcttttttattttggagaaatgttgccATTGCAAGGCCAaaggacttttattttttattattttgcagtgctttatttatttttaattgccgTGATCAGTGTTTTATCTACACTAAAGTAACTTTGAGTGAGGAACTGCATGTACAGCACTCATTGCTACAGAATCACTGGTTAATACTGGGTTAAtgataaataaacttgaattgatataaa
>TCONS_00008187
agctctcaaaaagtcCTTTGATGACAAAAACTTTCGACCATGGTCTTTATACCGGTTTCAATCAGCATTTACCCTTAGAGTTTCATTTAAAcgctttattacattaaaaagtaCAGCTATTCCATTTAATTTCTTATTAAATATACCAAGGCTCCGCTGATATTGAAATGTAATGCTATTGACGCATTAatagatcatagatatatgtaatAGATCACATTTGAAGCGTAGTTTTCGACGTAGTACACAAGGTGTGTGTGACGTACCGCGCAGGCTTTTGCACGGTCAGTGTGTCTGTTGTTGTTTAAAGAGACGCTCGGCGTCTGACTGACACTGGGATAAAGGCCACACacatttaaagggcacccatgatgaaaatcaacatttgtaagctgtttggagagAAAGTGTTGGAGTTTAAGTGAACAGGTACAGGATGCTGCGTCTGCGTTGCAAAGCCAAGAACGGGACCCATCTGATGCAGGGCCTTACACACCAATCTTGTGTTCAGGAACTCAAAGATAAGATCGAGGAGCTGACAGGGATACCATGCGATGTACAGAAAATCATGGT

Function

symbol description
yod1 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in several processes, including endoplasmic reticulum unfolded protein response; protein deubiquitination; and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within proteolysis and response to unfolded protein. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human YOD1 (YOD1 deubiquitinase).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0035523 protein K29-linked deubiquitination biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0006986 response to unfolded protein biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:1990167 protein K27-linked deubiquitination biological_process
GO:1990168 protein K33-linked deubiquitination biological_process
GO:0035871 protein K11-linked deubiquitination biological_process
GO:0016236 macroautophagy biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0101005 ubiquitinyl hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-050417-217 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in several processes, including endoplasmic reticulum unfolded protein response; protein deubiquitination; and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within proteolysis and response to unfolded protein. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human YOD1 (YOD1 deubiquitinase).

Ensembl:

ensembl_id ENSDARG00000008542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008185 False 3827 mRNA 0.38 2 37708384 37717709
TCONS_00008186 False 3450 mRNA 0.40 3 37708841 37720024
TCONS_00008187 True 573 mRNA 0.41 3 37717556 37720266

Neighbor

gene id symbol gene type direction distance location
XLOC_004285 zgc:158258 coding downstream 15365 37683278 ~ 37693019 (-)
XLOC_004284 NA coding downstream 93846 37613547 ~ 37614538 (-)
XLOC_004283 NA coding downstream 104403 37593008 ~ 37603981 (-)
XLOC_004281 bsnb coding downstream 119091 37431693 ~ 37589293 (-)
XLOC_004282 NA coding downstream 231416 37475513 ~ 37476968 (-)
XLOC_004287 NA coding upstream 60312 37780578 ~ 37827473 (-)
XLOC_004288 etnk2 coding upstream 128439 37848705 ~ 37880492 (-)
XLOC_004289 slc41a1 coding upstream 228573 37948839 ~ 37997419 (-)
XLOC_004290 NA coding upstream 264685 37984951 ~ 37987558 (-)
XLOC_004291 klhdc8a coding upstream 312849 38033115 ~ 38083473 (-)
XLOC_004063 CR854846.1 misc downstream 21580706 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25016693 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25086617 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25117088 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25195122 12512966 ~ 12513262 (-)
XLOC_004279 CR352285.2 non-coding downstream 408899 37299371 ~ 37299485 (-)
XLOC_004278 CR352285.1 non-coding downstream 410287 37297501 ~ 37298097 (-)
XLOC_004292 AL928854.1 non-coding upstream 319698 38039964 ~ 38041422 (-)
XLOC_004293 NA non-coding upstream 364606 38084872 ~ 38087013 (-)
XLOC_004294 NA non-coding upstream 429623 38149889 ~ 38198887 (-)

Expression


Co-expression Network